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For: Khan YD, Rasool N, Hussain W, Khan SA, Chou KC. iPhosT-PseAAC: Identify phosphothreonine sites by incorporating sequence statistical moments into PseAAC. Anal Biochem 2018;550:109-116. [DOI: 10.1016/j.ab.2018.04.021] [Citation(s) in RCA: 72] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2018] [Revised: 04/19/2018] [Accepted: 04/21/2018] [Indexed: 01/29/2023]
Number Cited by Other Article(s)
1
Shazia, Ullah FUM, Rho S, Lee MY. Predictive modeling for ubiquitin proteins through advanced machine learning technique. Heliyon 2024;10:e32517. [PMID: 38975176 PMCID: PMC11225741 DOI: 10.1016/j.heliyon.2024.e32517] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Accepted: 06/05/2024] [Indexed: 07/09/2024]  Open
2
Khojasteh H, Pirgazi J, Ghanbari Sorkhi A. Improving prediction of drug-target interactions based on fusing multiple features with data balancing and feature selection techniques. PLoS One 2023;18:e0288173. [PMID: 37535616 PMCID: PMC10399861 DOI: 10.1371/journal.pone.0288173] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Accepted: 06/21/2023] [Indexed: 08/05/2023]  Open
3
Alotaibi FM, Khan YD. A Framework for Prediction of Oncogenomic Progression Aiding Personalized Treatment of Gastric Cancer. Diagnostics (Basel) 2023;13:2291. [PMID: 37443684 DOI: 10.3390/diagnostics13132291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 06/05/2023] [Accepted: 06/13/2023] [Indexed: 07/15/2023]  Open
4
Attique M, Alkhalifah T, Alturise F, Khan YD. DeepBCE: Evaluation of deep learning models for identification of immunogenic B-cell epitopes. Comput Biol Chem 2023;104:107874. [PMID: 37126975 DOI: 10.1016/j.compbiolchem.2023.107874] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Revised: 04/17/2023] [Accepted: 04/20/2023] [Indexed: 05/03/2023]
5
Perveen G, Alturise F, Alkhalifah T, Daanial Khan Y. Hemolytic-Pred: A machine learning-based predictor for hemolytic proteins using position and composition-based features. Digit Health 2023;9:20552076231180739. [PMID: 37434723 PMCID: PMC10331097 DOI: 10.1177/20552076231180739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Accepted: 05/22/2023] [Indexed: 07/13/2023]  Open
6
Hassan A, Alkhalifah T, Alturise F, Khan YD. RCCC_Pred: A Novel Method for Sequence-Based Identification of Renal Clear Cell Carcinoma Genes through DNA Mutations and a Blend of Features. Diagnostics (Basel) 2022;12:diagnostics12123036. [PMID: 36553042 PMCID: PMC9776995 DOI: 10.3390/diagnostics12123036] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Revised: 11/24/2022] [Accepted: 11/30/2022] [Indexed: 12/07/2022]  Open
7
CNNLSTMac4CPred: A Hybrid Model for N4-Acetylcytidine Prediction. Interdiscip Sci 2022;14:439-451. [PMID: 35106702 DOI: 10.1007/s12539-021-00500-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2021] [Revised: 12/04/2021] [Accepted: 12/13/2021] [Indexed: 12/23/2022]
8
Naseer S, Hussain W, Khan YD, Rasool N. iPhosS(Deep)-PseAAC: Identification of Phosphoserine Sites in Proteins Using Deep Learning on General Pseudo Amino Acid Compositions. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2022;19:1703-1714. [PMID: 33242308 DOI: 10.1109/tcbb.2020.3040747] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
9
Malebary SJ, Alzahrani E, Khan YD. A comprehensive tool for accurate identification of methyl-Glutamine sites. J Mol Graph Model 2021;110:108074. [PMID: 34768228 DOI: 10.1016/j.jmgm.2021.108074] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Revised: 10/15/2021] [Accepted: 11/02/2021] [Indexed: 11/16/2022]
10
Alzahrani E, Alghamdi W, Ullah MZ, Khan YD. Identification of stress response proteins through fusion of machine learning models and statistical paradigms. Sci Rep 2021;11:21767. [PMID: 34741132 PMCID: PMC8571424 DOI: 10.1038/s41598-021-99083-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Accepted: 09/13/2021] [Indexed: 11/08/2022]  Open
11
Alghamdi W, Alzahrani E, Ullah MZ, Khan YD. 4mC-RF: Improving the prediction of 4mC sites using composition and position relative features and statistical moment. Anal Biochem 2021;633:114385. [PMID: 34571005 DOI: 10.1016/j.ab.2021.114385] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Revised: 09/09/2021] [Accepted: 09/13/2021] [Indexed: 01/28/2023]
12
Akmal MA, Hussain W, Rasool N, Khan YD, Khan SA, Chou KC. Using CHOU'S 5-Steps Rule to Predict O-Linked Serine Glycosylation Sites by Blending Position Relative Features and Statistical Moment. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2021;18:2045-2056. [PMID: 31985438 DOI: 10.1109/tcbb.2020.2968441] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
13
Malebary SJ, Khan YD. Evaluating machine learning methodologies for identification of cancer driver genes. Sci Rep 2021;11:12281. [PMID: 34112883 PMCID: PMC8192921 DOI: 10.1038/s41598-021-91656-8] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Accepted: 05/19/2021] [Indexed: 02/06/2023]  Open
14
Naseer S, Hussain W, Khan YD, Rasool N. NPalmitoylDeep-PseAAC: A Predictor of N-Palmitoylation Sites in Proteins Using Deep Representations of Proteins and PseAAC via Modified 5-Steps Rule. Curr Bioinform 2021. [DOI: 10.2174/1574893615999200605142828] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
15
Wang Y, Li Z, Zhang Y, Ma Y, Huang Q, Chen X, Dai Z, Zou X. Performance improvement for a 2D convolutional neural network by using SSC encoding on protein-protein interaction tasks. BMC Bioinformatics 2021;22:184. [PMID: 33845759 PMCID: PMC8042949 DOI: 10.1186/s12859-021-04111-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2020] [Accepted: 03/30/2021] [Indexed: 11/18/2022]  Open
16
iAmideV-Deep: Valine Amidation Site Prediction in Proteins Using Deep Learning and Pseudo Amino Acid Compositions. Symmetry (Basel) 2021. [DOI: 10.3390/sym13040560] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]  Open
17
Awais M, Hussain W, Khan YD, Rasool N, Khan SA, Chou KC. iPhosH-PseAAC: Identify Phosphohistidine Sites in Proteins by Blending Statistical Moments and Position Relative Features According to the Chou's 5-Step Rule and General Pseudo Amino Acid Composition. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2021;18:596-610. [PMID: 31144645 DOI: 10.1109/tcbb.2019.2919025] [Citation(s) in RCA: 48] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
18
Khan YD, Alzahrani E, Alghamdi W, Ullah MZ. Sequence-based Identification of Allergen Proteins Developed by Integration of PseAAC and Statistical Moments via 5-Step Rule. Curr Bioinform 2021. [DOI: 10.2174/1574893615999200424085947] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
19
Xu Y, Zhao X, Liu S, Zhang W. Predicting Long non-coding RNAs through feature ensemble learning. BMC Genomics 2020;21:865. [PMID: 33334320 PMCID: PMC7745355 DOI: 10.1186/s12864-020-07237-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
20
Naseer S, Hussain W, Khan YD, Rasool N. Optimization of serine phosphorylation prediction in proteins by comparing human engineered features and deep representations. Anal Biochem 2020;615:114069. [PMID: 33340540 DOI: 10.1016/j.ab.2020.114069] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2020] [Revised: 11/15/2020] [Accepted: 12/14/2020] [Indexed: 02/01/2023]
21
Liu GH, Zhang BW, Qian G, Wang B, Mao B, Bichindaritz I. Bioimage-Based Prediction of Protein Subcellular Location in Human Tissue with Ensemble Features and Deep Networks. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2020;17:1966-1980. [PMID: 31107658 DOI: 10.1109/tcbb.2019.2917429] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
22
Liu Y, Yu Z, Chen C, Han Y, Yu B. Prediction of protein crotonylation sites through LightGBM classifier based on SMOTE and elastic net. Anal Biochem 2020;609:113903. [DOI: 10.1016/j.ab.2020.113903] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2020] [Revised: 07/27/2020] [Accepted: 08/05/2020] [Indexed: 12/18/2022]
23
Amanat S, Ashraf A, Hussain W, Rasool N, Khan YD. Identification of Lysine Carboxylation Sites in Proteins by Integrating Statistical Moments and Position Relative Features via General PseAAC. Curr Bioinform 2020. [DOI: 10.2174/1574893614666190723114923] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
24
Shah AA, Khan YD. Identification of 4-carboxyglutamate residue sites based on position based statistical feature and multiple classification. Sci Rep 2020;10:16913. [PMID: 33037248 PMCID: PMC7547663 DOI: 10.1038/s41598-020-73107-y] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2020] [Accepted: 08/20/2020] [Indexed: 11/08/2022]  Open
25
Behbahani M, Rabiei P, Mohabatkar H. A Comparative Analysis of Allergen Proteins between Plants and Animals Using Several Computational Tools and Chou's PseAAC Concept. Int Arch Allergy Immunol 2020;181:813-821. [PMID: 32906141 DOI: 10.1159/000509084] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2020] [Accepted: 05/29/2020] [Indexed: 11/19/2022]  Open
26
Hussain W, Rasool N, Khan YD. Insights into Machine Learning-based Approaches for Virtual Screening in Drug Discovery: Existing Strategies and Streamlining Through FP-CADD. Curr Drug Discov Technol 2020;18:463-472. [PMID: 32767944 DOI: 10.2174/1570163817666200806165934] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Revised: 07/01/2020] [Accepted: 07/03/2020] [Indexed: 11/22/2022]
27
Chou KC. An Insightful 10-year Recollection Since the Emergence of the 5-steps Rule. Curr Pharm Des 2020;25:4223-4234. [PMID: 31782354 DOI: 10.2174/1381612825666191129164042] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Accepted: 11/25/2019] [Indexed: 11/22/2022]
28
Hu Y, Lu Y, Wang S, Zhang M, Qu X, Niu B. Application of Machine Learning Approaches for the Design and Study of Anticancer Drugs. Curr Drug Targets 2020;20:488-500. [PMID: 30091413 DOI: 10.2174/1389450119666180809122244] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2018] [Revised: 06/19/2018] [Accepted: 06/25/2018] [Indexed: 12/14/2022]
29
Feng P, Wang Z. Recent Advances in Computational Methods for Identifying Anticancer Peptides. Curr Drug Targets 2020;20:481-487. [PMID: 30068270 DOI: 10.2174/1389450119666180801121548] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Revised: 05/28/2018] [Accepted: 05/28/2018] [Indexed: 01/10/2023]
30
Progresses in Predicting Post-translational Modification. Int J Pept Res Ther 2020. [DOI: 10.1007/s10989-019-09893-5
https://link.springer.com/article/10.1007%2fs10989-019-09893-5
] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/29/2022]
31
Zheng L, Huang S, Mu N, Zhang H, Zhang J, Chang Y, Yang L, Zuo Y. RAACBook: a web server of reduced amino acid alphabet for sequence-dependent inference by using Chou's five-step rule. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2020;2019:5650975. [PMID: 31802128 PMCID: PMC6893003 DOI: 10.1093/database/baz131] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/20/2019] [Revised: 10/16/2019] [Accepted: 10/17/2019] [Indexed: 12/12/2022]
32
Hussain W, Rasool N, Khan YD. A Sequence-Based Predictor of Zika Virus Proteins Developed by Integration of PseAAC and Statistical Moments. Comb Chem High Throughput Screen 2020;23:797-804. [PMID: 32342804 DOI: 10.2174/1386207323666200428115449] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Revised: 03/17/2020] [Accepted: 03/19/2020] [Indexed: 12/20/2022]
33
Identifying FL11 subtype by characterizing tumor immune microenvironment in prostate adenocarcinoma via Chou's 5-steps rule. Genomics 2020;112:1500-1515. [DOI: 10.1016/j.ygeno.2019.08.021] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Revised: 08/03/2019] [Accepted: 08/26/2019] [Indexed: 12/14/2022]
34
Ahmad A, Lin H, Shatabda S. Locate-R: Subcellular localization of long non-coding RNAs using nucleotide compositions. Genomics 2020;112:2583-2589. [PMID: 32068122 DOI: 10.1016/j.ygeno.2020.02.011] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Revised: 11/11/2019] [Accepted: 02/12/2020] [Indexed: 12/12/2022]
35
Ju Z, Wang SY. Prediction of lysine formylation sites using the composition of k-spaced amino acid pairs via Chou's 5-steps rule and general pseudo components. Genomics 2020;112:859-866. [DOI: 10.1016/j.ygeno.2019.05.027] [Citation(s) in RCA: 54] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2019] [Revised: 05/13/2019] [Accepted: 05/30/2019] [Indexed: 11/30/2022]
36
Lu B, Liu XH, Liao SM, Lu ZL, Chen D, Troy Ii FA, Huang RB, Zhou GP. A Possible Modulation Mechanism of Intramolecular and Intermolecular Interactions for NCAM Polysialylation and Cell Migration. Curr Top Med Chem 2019;19:2271-2282. [PMID: 31648641 DOI: 10.2174/1568026619666191018094805] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Revised: 08/01/2019] [Accepted: 08/06/2019] [Indexed: 12/31/2022]
37
pLoc_bal-mHum: Predict subcellular localization of human proteins by PseAAC and quasi-balancing training dataset. Genomics 2019;111:1274-1282. [DOI: 10.1016/j.ygeno.2018.08.007] [Citation(s) in RCA: 56] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2018] [Revised: 08/14/2018] [Accepted: 08/16/2018] [Indexed: 12/17/2022]
38
Chou KC. Impacts of Pseudo Amino Acid Components and 5-steps Rule to Proteomics and Proteome Analysis. Curr Top Med Chem 2019;19:2283-2300. [DOI: 10.2174/1568026619666191018100141] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2019] [Revised: 08/18/2019] [Accepted: 08/26/2019] [Indexed: 01/27/2023]
39
Malebary SJ, Rehman MSU, Khan YD. iCrotoK-PseAAC: Identify lysine crotonylation sites by blending position relative statistical features according to the Chou's 5-step rule. PLoS One 2019;14:e0223993. [PMID: 31751380 PMCID: PMC6874067 DOI: 10.1371/journal.pone.0223993] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Accepted: 10/02/2019] [Indexed: 01/22/2023]  Open
40
SDBP-Pred: Prediction of single-stranded and double-stranded DNA-binding proteins by extending consensus sequence and K-segmentation strategies into PSSM. Anal Biochem 2019;589:113494. [PMID: 31693872 DOI: 10.1016/j.ab.2019.113494] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2019] [Revised: 10/24/2019] [Accepted: 10/31/2019] [Indexed: 11/24/2022]
41
Behbahani M, Nosrati M, Moradi M, Mohabatkar H. Using Chou's General Pseudo Amino Acid Composition to Classify Laccases from Bacterial and Fungal Sources via Chou's Five-Step Rule. Appl Biochem Biotechnol 2019;190:1035-1048. [PMID: 31659712 DOI: 10.1007/s12010-019-03141-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2019] [Accepted: 09/12/2019] [Indexed: 01/28/2023]
42
Kang C. 19F-NMR in Target-based Drug Discovery. Curr Med Chem 2019;26:4964-4983. [PMID: 31187703 DOI: 10.2174/0929867326666190610160534] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2018] [Revised: 08/14/2018] [Accepted: 03/13/2019] [Indexed: 02/06/2023]
43
Su ZD, Huang Y, Zhang ZY, Zhao YW, Wang D, Chen W, Chou KC, Lin H. iLoc-lncRNA: predict the subcellular location of lncRNAs by incorporating octamer composition into general PseKNC. Bioinformatics 2019;34:4196-4204. [PMID: 29931187 DOI: 10.1093/bioinformatics/bty508] [Citation(s) in RCA: 129] [Impact Index Per Article: 25.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2018] [Accepted: 06/19/2018] [Indexed: 12/20/2022]  Open
44
Khan YD, Amin N, Hussain W, Rasool N, Khan SA, Chou KC. iProtease-PseAAC(2L): A two-layer predictor for identifying proteases and their types using Chou's 5-step-rule and general PseAAC. Anal Biochem 2019;588:113477. [PMID: 31654612 DOI: 10.1016/j.ab.2019.113477] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2019] [Revised: 10/02/2019] [Accepted: 10/18/2019] [Indexed: 12/16/2022]
45
Liang R, Xie J, Zhang C, Zhang M, Huang H, Huo H, Cao X, Niu B. Identifying Cancer Targets Based on Machine Learning Methods via Chou's 5-steps Rule and General Pseudo Components. Curr Top Med Chem 2019;19:2301-2317. [PMID: 31622219 DOI: 10.2174/1568026619666191016155543] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2019] [Revised: 07/19/2019] [Accepted: 08/26/2019] [Indexed: 01/09/2023]
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Liu B, Li K, Huang DS, Chou KC. iEnhancer-EL: identifying enhancers and their strength with ensemble learning approach. Bioinformatics 2019;34:3835-3842. [PMID: 29878118 DOI: 10.1093/bioinformatics/bty458] [Citation(s) in RCA: 138] [Impact Index Per Article: 27.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Accepted: 06/06/2018] [Indexed: 11/14/2022]  Open
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Prediction of S-Sulfenylation Sites Using Statistical Moments Based Features via CHOU’S 5-Step Rule. Int J Pept Res Ther 2019. [DOI: 10.1007/s10989-019-09931-2] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Chou KC. Proposing Pseudo Amino Acid Components is an Important Milestone for Proteome and Genome Analyses. Int J Pept Res Ther 2019. [DOI: 10.1007/s10989-019-09910-7] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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Chou KC. Progresses in Predicting Post-translational Modification. Int J Pept Res Ther 2019. [DOI: 10.1007/s10989-019-09893-5] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Xiao X, Cheng X, Chen G, Mao Q, Chou KC. pLoc_bal-mVirus: Predict Subcellular Localization of Multi-Label Virus Proteins by Chou's General PseAAC and IHTS Treatment to Balance Training Dataset. Med Chem 2019;15:496-509. [DOI: 10.2174/1573406415666181217114710] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Revised: 10/23/2018] [Accepted: 12/12/2018] [Indexed: 12/17/2022]
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