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Nakum R, Ghosh AK, Ranjan Jali B, Sahoo SK. Fluorescent ovalbumin-functionalized gold nanocluster as a highly sensitive and selective sensor for relay detection of salicylaldehyde, Hg(II) and folic acid. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 313:124143. [PMID: 38471309 DOI: 10.1016/j.saa.2024.124143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Revised: 03/05/2024] [Accepted: 03/08/2024] [Indexed: 03/14/2024]
Abstract
A sensitive and selective relay-based scheme for the detection of salicylaldehyde, Hg2+, and folic acid (FA) has been demonstrated using fluorescent ovalbumin functionalized gold nanoclusters (OVA-AuNCs, λem = 655 nm) in this article. The OVA-AuNCs were conjugated to salicylaldehyde via an imine linkage to form Salic_OVA-AuNCs conjugate. The molecular docking study reveals that multiple functional groups and amino acid residues are involved in the interaction between salicylaldehyde and the OVA-AuNCs. The coupling of salicylaldehyde with OVA-AuNCs results in fluorescence quenching at 655 nm and concomitant formation of an emission band at 500 nm, which have leveraged to detect salicylaldehyde down to 2.02 µM. Following that, the Salic_OVA-AuNCs has been used for the detection of Hg2+ and FA. Several processes, such as internal charge transfer (ICT), photoinduced electron transfer (PET) and metallophilic interactions, are involved between the Salic_OVA-AuNCs nanoprobe and the analytes, which allowed to detect Hg2+ and FA down to 0.13 nM and 0.11 nM, respectively. The Salic_OVA-AuNCs nanoprobe has an additional naked-eye utility when applied to paper-strip sensing strategy for Hg2+ and FA detection.
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Affiliation(s)
- Rajanee Nakum
- Department of Chemistry, Sardar Vallabhbhai National Institute Technology, Surat 395007, Gujarat, India
| | - Arup K Ghosh
- Department of Chemistry, Sardar Vallabhbhai National Institute Technology, Surat 395007, Gujarat, India
| | - Bigyan Ranjan Jali
- Department of Chemistry, Veer Surendra Sai University of Technology, Burla, Sambalpur, Odisha, India
| | - Suban K Sahoo
- Department of Chemistry, Sardar Vallabhbhai National Institute Technology, Surat 395007, Gujarat, India.
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2
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Krebs F, Zagst H, Stein M, Ratih R, Minkner R, Olabi M, Hartung S, Scheller C, Lapizco-Encinas BH, Sänger-van de Griend C, García CD, Wätzig H. Strategies for capillary electrophoresis: Method development and validation for pharmaceutical and biological applications-Updated and completely revised edition. Electrophoresis 2023; 44:1279-1341. [PMID: 37537327 DOI: 10.1002/elps.202300158] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Accepted: 07/19/2023] [Indexed: 08/05/2023]
Abstract
This review is in support of the development of selective, precise, fast, and validated capillary electrophoresis (CE) methods. It follows up a similar article from 1998, Wätzig H, Degenhardt M, Kunkel A. "Strategies for capillary electrophoresis: method development and validation for pharmaceutical and biological applications," pointing out which fundamentals are still valid and at the same time showing the enormous achievements in the last 25 years. The structures of both reviews are widely similar, in order to facilitate their simultaneous use. Focusing on pharmaceutical and biological applications, the successful use of CE is now demonstrated by more than 600 carefully selected references. Many of those are recent reviews; therefore, a significant overview about the field is provided. There are extra sections about sample pretreatment related to CE and microchip CE, and a completely revised section about method development for protein analytes and biomolecules in general. The general strategies for method development are summed up with regard to selectivity, efficiency, precision, analysis time, limit of detection, sample pretreatment requirements, and validation.
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Affiliation(s)
- Finja Krebs
- Institute, of Medicinal and Pharmaceutical Chemistry, Technische Universität Braunschweig, Braunschweig, Lower Saxony, Germany
| | - Holger Zagst
- Institute, of Medicinal and Pharmaceutical Chemistry, Technische Universität Braunschweig, Braunschweig, Lower Saxony, Germany
| | - Matthias Stein
- Institute, of Medicinal and Pharmaceutical Chemistry, Technische Universität Braunschweig, Braunschweig, Lower Saxony, Germany
| | - Ratih Ratih
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Surabaya, Surabaya, East Java, Indonesia
| | - Robert Minkner
- Institute, of Medicinal and Pharmaceutical Chemistry, Technische Universität Braunschweig, Braunschweig, Lower Saxony, Germany
| | - Mais Olabi
- Institute, of Medicinal and Pharmaceutical Chemistry, Technische Universität Braunschweig, Braunschweig, Lower Saxony, Germany
| | - Sophie Hartung
- Institute, of Medicinal and Pharmaceutical Chemistry, Technische Universität Braunschweig, Braunschweig, Lower Saxony, Germany
| | - Christin Scheller
- Institute, of Medicinal and Pharmaceutical Chemistry, Technische Universität Braunschweig, Braunschweig, Lower Saxony, Germany
| | - Blanca H Lapizco-Encinas
- Department of Biomedical Engineering, Kate Gleason College of Engineering, Rochester Institute of Technology, Rochester, New York, USA
| | - Cari Sänger-van de Griend
- Kantisto BV, Baarn, The Netherlands
- Department of Medicinal Chemistry, Faculty of Pharmacy, Uppsala Universitet, Uppsala, Sweden
| | - Carlos D García
- Department of Chemistry, Clemson University, Clemson, South Carolina, USA
| | - Hermann Wätzig
- Institute, of Medicinal and Pharmaceutical Chemistry, Technische Universität Braunschweig, Braunschweig, Lower Saxony, Germany
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Novel developments in capillary electrophoresis miniaturization, sampling, detection and portability: An overview of the last decade. Trends Analyt Chem 2023. [DOI: 10.1016/j.trac.2023.116941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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4
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Heteroatom engineered graphene-based electrochemical assay for the quantification of high-risk abused drug oxytocin in edibles and biological samples. Food Chem 2023; 400:134106. [DOI: 10.1016/j.foodchem.2022.134106] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 08/22/2022] [Accepted: 08/31/2022] [Indexed: 11/19/2022]
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5
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van Dyk H, Jacobs FJF, Kroon RE, Makhafola TJ, Brink A. Characterisation, structural investigations and biological activity of substituted salicylidene-based compounds. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2022]
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6
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Two-photon fluorescence lifetime for label-free microfluidic droplet sorting. Anal Bioanal Chem 2021; 414:721-730. [PMID: 34792636 PMCID: PMC8748334 DOI: 10.1007/s00216-021-03745-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2021] [Revised: 10/14/2021] [Accepted: 10/19/2021] [Indexed: 12/19/2022]
Abstract
Microfluidic droplet sorting systems facilitate automated selective micromanipulation of compartmentalized micro- and nano-entities in a fluidic stream. Current state-of-the-art droplet sorting systems mainly rely on fluorescence detection in the visible range with the drawback that pre-labeling steps are required. This limits the application range significantly, and there is a high demand for alternative, label-free methods. Therefore, we introduce time-resolved two-photon excitation (TPE) fluorescence detection with excitation at 532 nm as a detection technique in droplet microfluidics. This enables label-free in-droplet detection of small aromatic compounds that only absorb in a deep-UV spectral region. Applying time-correlated single-photon counting, compounds with similar emission spectra can be distinguished due to their fluorescence lifetimes. This information is then used to trigger downstream dielectrophoretic droplet sorting. In this proof-of-concept study, we developed a polydimethylsiloxane-fused silica (FS) hybrid chip that simultaneously provides a very high optical transparency in the deep-UV range and suitable surface properties for droplet microfluidics. The herein developed system incorporating a 532-nm picosecond laser, time-correlated single-photon counting (TCSPC), and a chip-integrated dielectrophoretic pulsed actuator was exemplarily applied to sort droplets containing serotonin or propranolol. Furthermore, yeast cells were screened using the presented platform to show its applicability to study cells based on their protein autofluorescence via TPE fluorescence lifetime at 532 nm.
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Native fluorescence detection with a laser driven light source for protein analysis in capillary electrophoresis. Anal Chim Acta 2021; 1183:338936. [PMID: 34627519 DOI: 10.1016/j.aca.2021.338936] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 07/19/2021] [Accepted: 08/09/2021] [Indexed: 02/05/2023]
Abstract
While ultraviolet light (UV) absorbance detection is the most widely used detection mode in capillary electrophoresis (CE), it can yield poor concentration sensitivity and has tendencies to exhibit baseline fluctuations. In order to overcome these challenges, alternative detection strategies, including the use of dedicated wavelength lasers, have been applied, resulting in enhancements of concentration sensitivity as well as decreased baseline disturbance. In this work, using a laser driven light source for excitation, we reported a native fluorescence detection (NFD) scheme for use in a commercial CE platform, PA 800 Plus Pharmaceutical Analysis System, for protein analysis. The CE-NFD system was characterized using tryptophan and a reduced IgG. We compared NFD with UV absorbance detection as applied to sodium dodecyl sulfate-capillary gel electrophoresis (SDS-CGE) and capillary isoelectric focusing (cIEF). In SDS-CGE, with the reported NFD a non-reduced IgG standard sample yielded a signal-to-noise ratio which was 14.6 times higher than with UV absorbance detection at 214 nm. In cIEF analysis of NISTmAb, Humanized IgG1k, with NFD ∼170 times less sample mass was needed to obtain similar profile quality to that with UV absorbance detection at 280 nm. NFD also eliminated baseline anomalies observed with UV absorbance detection and showed less interference by other absorbing species. These results suggest that CE-NFD is a practical and powerful tool for protein characterization in the biopharmaceutical industry.
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8
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Twenty years of amino acid determination using capillary electrophoresis: A review. Anal Chim Acta 2021; 1174:338233. [DOI: 10.1016/j.aca.2021.338233] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Revised: 01/14/2021] [Accepted: 01/16/2021] [Indexed: 12/28/2022]
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9
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A Fluorescent Sensor for Daunorubicin Determination Using 808 nm-excited Upconversion Nanoparticles. J Inorg Organomet Polym Mater 2021. [DOI: 10.1007/s10904-020-01872-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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10
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After enjoying curry: urine metabolism analysis of curcuminoids by microemulsion electrokinetic chromatography with laser-induced native fluorescence detection. J Chromatogr A 2020; 1635:461729. [PMID: 33250162 DOI: 10.1016/j.chroma.2020.461729] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Revised: 11/14/2020] [Accepted: 11/16/2020] [Indexed: 12/15/2022]
Abstract
Considering pH-dependent fluorescence of curcuminoids, a microemulsion electrokinetic chromatographic (MEEKC) method was developed under acidic conditions for their separation and detection using laser-induced native fluorescence (LINF), so as to solve the analysis of urine metabolism for curcuminoids. The microemulsion composition was optimized by response surface methodology (RSM), and the effects of buffer pH and organic modifiers were systematically investigated. The optimal buffer for the separation of curcuminoids was chosen as follows: 2.8% (v/v) ethyl acetate, 80 mM SDS and 2.8% (v/v) n-butanol to form microemulsion, 28% (v/v) ethanol as organic modifier, and 20 mM phosphoric acid as electrolyte at pH 3.0. Under these conditions, four curcuminoids including curcumin, demethoxy curcumin (DMC), bisdemethoxy curcumin (BDMC) and demethyl curcumin (DEC) could be well separated within 18 min, and the detection limits (LOD, based on S/N=3) were calculated to be 71, 60, 22, and 147 pg mL-1, respectively. Combined with solid-phase extraction (SPE), the developed MEEKC-LINF method has been successfully applied to continuously monitor the curcuminoids and related metabolites in human urine collected from a healthy volunteer after oral administration of curry, testifying that this method has potential for evaluating the pharmacological activity of curcuminoids.
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Elbashir AA, Elgorashe REE, Alnajjar AO, Aboul-Enein HY. Application of Capillary Electrophoresis with Capacitively Coupled Contactless Conductivity Detection (CE-C 4D): 2017-2020. Crit Rev Anal Chem 2020; 52:535-543. [PMID: 32835492 DOI: 10.1080/10408347.2020.1809340] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
Capacitively coupled contactless conductivity detection (C4D) has emerged as influential to detect analytes that do not have chromogenic or fluorogenic functional group. Since our last review several new capillary electrophoresis (CE) methods coupled with (CE-C4D) have been communicated. The aim of this review is to give an update of the almost all the new applications of CE-C4D in the field of pharmaceutical, food and biomedical analysis covering the period from 2017 to April 2020. The utilization of CE with C4D in the areas of pharmaceutical, food and biomedical analysis is presented. Finally, concluding remarks and outlooks are discussed.
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Affiliation(s)
- Abdalla Ahmed Elbashir
- Department of Chemistry, College of Science, King Faisal University, Al Ahsa, Saudi Arabia
| | | | - Ahmed O Alnajjar
- Department of Chemistry, College of Science, King Faisal University, Al Ahsa, Saudi Arabia
| | - Hassan Y Aboul-Enein
- Pharmaceutical and Medicinal Chemistry Department, Pharmaceutical and Drug Industries Research Division, National Research Centre, Cairo, Egypt
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12
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He L, Shen Z, Cao Y, Li T, Wu D, Dong Y, Gan N. A microfluidic chip based ratiometric aptasensor for antibiotic detection in foods using stir bar assisted sorptive extraction and rolling circle amplification. Analyst 2019; 144:2755-2764. [PMID: 30869681 DOI: 10.1039/c9an00106a] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
A ratiometric and sensitive microfluidic chip based aptasensor was developed for antibiotic detection with kanamycin (Kana) as a model analyte. A novel stir bar assisted sorptive extraction and rolling circle amplification strategy was designed to largely amplify the signal and overcome complex matrix interference in food samples. The detection mechanism was as follows: firstly, many duplex DNA probes (a single-stranded DNA as a primer hybrid with an aptamer sequence) were modified on a stir bar. In the presence of Kana, the probes on the bar could specifically capture Kana and release the primer to trigger RCA in the presence of a circular DNA template (CDT). As the reaction proceeds, the amount of CDT decreased and the number of RCA products increased. It is worth mentioning that they can be efficiently separated and detected using a microfluidic chip. The signal ratio of RCA products and CDT (IR/IC) can be employed to qualify Kana in a wide linear range from 0.8 pg mL-1 to 10 ng mL-1 with a low detection limit of 0.3 pg mL-1. This method exhibited excellent sensitivity and selectivity and can obviously reduce the matrix interference through a ratiometric strategy combined with stir bar extraction. The aptasensor was successfully tested in milk and fish samples, confirming that it can be applied for on-site quantitation of antibiotic residues in foods.
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Affiliation(s)
- Liyong He
- Faculty of Materials Science and Chemical Engineering, Ningbo University, Ningbo, 315211, PR China.
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13
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Morani M, Taverna M, Mai TD. A fresh look into background electrolyte selection for capillary electrophoresis‐laser induced fluorescence of peptides and proteins. Electrophoresis 2019; 40:2618-2624. [DOI: 10.1002/elps.201900084] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2019] [Revised: 05/14/2019] [Accepted: 05/18/2019] [Indexed: 12/29/2022]
Affiliation(s)
- Marco Morani
- Institut Galien Paris Sud, UMR 8612, Protein and Nanotechnology in Analytical Science (PNAS)CNRSUniv. Paris‐SudUniv. Paris‐Saclay Châtenay‐Malabry France
| | - Myriam Taverna
- Institut Galien Paris Sud, UMR 8612, Protein and Nanotechnology in Analytical Science (PNAS)CNRSUniv. Paris‐SudUniv. Paris‐Saclay Châtenay‐Malabry France
| | - Thanh Duc Mai
- Institut Galien Paris Sud, UMR 8612, Protein and Nanotechnology in Analytical Science (PNAS)CNRSUniv. Paris‐SudUniv. Paris‐Saclay Châtenay‐Malabry France
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14
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Zhou L, Gan N, Wu Y, Hu F, Lin J, Cao Y, Wu D. Multiplex detection of quality indicator molecule targets in urine using programmable hairpin probes based on a simple double-T type microchip electrophoresis platform and isothermal polymerase-catalyzed target recycling. Analyst 2019; 143:2696-2704. [PMID: 29774900 DOI: 10.1039/c8an00141c] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Recently, it has been crucial to be able to detect and quantify small molecular targets simultaneously in biological samples. Herein, a simple and conventional double-T type microchip electrophoresis (MCE) based platform for the multiplex detection of quality indicator molecule targets in urine, using ampicillin (AMPI), adenosine triphosphate (ATP) and estradiol (E2) as models, was developed. Several programmable hairpin probes (PHPs) were designed for detecting different targets and triggering isothermal polymerase-catalyzed target recycling (IPCTR) for signal amplification. Based on the target-responsive aptamer structure of PHP (Domain I), target recognition can induce PHP conformational transition and produce extension duplex DNA (dsDNA), assisted by primers & Bst polymerase. Afterwards, the target can be displaced to react with another PHP and initiate the next cycle. After several rounds of reaction, the dsDNA can be produced in large amounts by IPCTR. Three targets can be simultaneously converted to dsDNA fragments with different lengths, which can be separated and detected using MCE. Thus, a simple double-T type MCE based platform was successfully built for the homogeneous detection of multiplex targets in one channel. Under optimal conditions, the assay exhibited high throughput (48 samples per hour at most, not including reaction time) and sensitivity to three targets in urine with a detection limit of 1 nM (ATP), 0.05 nM (AMPI) and 0.1 nM (E2) respectively. The multiplex assay was successfully employed for the above three targets in several urine samples and combined the advantages of the high specificity of programmable hairpin probes, the excellent signal amplification of IPCTR, and the high through-put of MCE which can be employed for screening in biochemical analysis.
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Affiliation(s)
- Lingying Zhou
- Faculty of Materials Science and Chemical Engineering, Ningbo University, Ningbo, 315211, China.
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15
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Cieslarova Z, Magaldi M, Barros LA, do Lago CL, Oliveira DR, Fonseca FAH, Izar MC, Lopes AS, Tavares MFM, Klassen A. Capillary electrophoresis with dual diode array detection and tandem mass spectrometry to access cardiovascular biomarkers candidates in human urine: Trimethylamine-N-Oxide and l-carnitine. J Chromatogr A 2019; 1583:136-142. [DOI: 10.1016/j.chroma.2018.10.005] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2018] [Revised: 10/02/2018] [Accepted: 10/06/2018] [Indexed: 02/06/2023]
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16
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Chen X, Hong F, Cao Y, Hu F, Wu Y, Wu D, Li T, Lin J, Gan N. A microchip electrophoresis-based assay for ratiometric detection of kanamycin by R-shape probe and exonuclease-assisted signal amplification. Talanta 2018; 189:494-501. [DOI: 10.1016/j.talanta.2018.07.010] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2018] [Revised: 06/03/2018] [Accepted: 07/05/2018] [Indexed: 10/28/2022]
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17
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Sensitive analysis of curcuminoids via micellar electrokinetic chromatography with laser-induced native fluorescence detection and mixed micelles-induced fluorescence synergism. J Chromatogr A 2018; 1564:207-213. [DOI: 10.1016/j.chroma.2018.06.012] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Revised: 05/31/2018] [Accepted: 06/05/2018] [Indexed: 02/06/2023]
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18
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Drevinskas T, Stankevičius M, Bimbiraitė-Survilienė K, Naujokaitytė G, Kaškonienė V, Kondrotienė K, Šernienė L, Kornyšova O, Malakauskas M, Maruška A. Optimization of a capillary zone electrophoresis-contactless conductivity detection method for the determination of nisin. Electrophoresis 2018; 39:2425-2430. [PMID: 29935020 DOI: 10.1002/elps.201800143] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2018] [Revised: 06/04/2018] [Accepted: 06/14/2018] [Indexed: 12/23/2022]
Abstract
Determination of natural preservatives using electrophoretic or chromatographic techniques in fermented milk products is a complex task due to the following reasons: (i) the concentrations of the analytes can be below the detection limits, (ii) complex matrix and comigrating/coeluting compounds in the sample can interfere with the analytes of the interest, (iii) low recovery of the analytes, and (iv) the necessity of complex sample preparation. The aim of this study was to apply capillary zone electrophoresis coupled with contactless conductivity detection for the separation and determination of nisin in fermented milk products. In this work, separation and determination of natural preservative-nisin in fermented milk products is described. Optimized conditions using capillary zone electrophoresis coupled with capacitance-to-digital technology based contactless conductivity detector and data conditioning, which filter the noise of the electropherogram adaptively to the peak migration time, allowed precise, accurate, sensitive (limit of quantification: 0.02 μg/mL), and most importantly requiring very minute sample preparation, determination of nisin. Sample preparation includes following steps: (i) extraction/dilution and (ii) centrifugation. This method was applied for the determination of nisin in real samples, i.e. fermented milk products. The values of different nisin forms were ranging from 0.056 ± 0.003 μg/mL to 9.307 ± 0.437 μg/g.
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Affiliation(s)
- Tomas Drevinskas
- Instrumental Analysis Open Access Centre, Faculty of Natural Sciences, Vytautas Magnus University, Kaunas, Lithuania
| | - Mantas Stankevičius
- Instrumental Analysis Open Access Centre, Faculty of Natural Sciences, Vytautas Magnus University, Kaunas, Lithuania
| | | | - Gintarė Naujokaitytė
- Instrumental Analysis Open Access Centre, Faculty of Natural Sciences, Vytautas Magnus University, Kaunas, Lithuania
| | - Vilma Kaškonienė
- Instrumental Analysis Open Access Centre, Faculty of Natural Sciences, Vytautas Magnus University, Kaunas, Lithuania
| | - Kristina Kondrotienė
- Department of Food Safety and Quality, Veterinary Academy, Lithuanian University of Health Sciences, Kaunas, Lithuania
| | - Loreta Šernienė
- Department of Food Safety and Quality, Veterinary Academy, Lithuanian University of Health Sciences, Kaunas, Lithuania
| | - Olga Kornyšova
- Instrumental Analysis Open Access Centre, Faculty of Natural Sciences, Vytautas Magnus University, Kaunas, Lithuania
| | - Mindaugas Malakauskas
- Department of Food Safety and Quality, Veterinary Academy, Lithuanian University of Health Sciences, Kaunas, Lithuania
| | - Audrius Maruška
- Instrumental Analysis Open Access Centre, Faculty of Natural Sciences, Vytautas Magnus University, Kaunas, Lithuania
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Sheathless coupling of microchip electrophoresis to ESI-MS utilising an integrated photo polymerised membrane for electric contacting. Anal Bioanal Chem 2018; 410:5741-5750. [PMID: 29974150 DOI: 10.1007/s00216-018-1226-0] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2018] [Revised: 06/12/2018] [Accepted: 06/22/2018] [Indexed: 10/28/2022]
Abstract
In this article, we present a novel approach for the sheathless coupling of microchip electrophoresis (MCE) with electrospray mass spectrometry (ESI-MS). The key element is an ion-conductive hydrogel membrane, placed between the separation channel and an adjacent microfluidic supporting channel, contacted via platinum electrodes. This solves the persistent challenge in hyphenation of mass spectrometry to chip electrophoresis, to ensure a reliable electrical connection at the end of the electrophoresis channel without sacrificing separation performance and sensitivity. Stable electric contacting is achieved via a Y-shaped supporting channel structure, separated from the main channel by a photo polymerised, ion permeable hydrogel membrane. Thus, the potential gradient required for performing electrophoretic separations can be generated while simultaneously preventing gas formation due to electrolysis. In contrast to conventional make-up or sheathflow approaches, sample dilution is also avoided. Rapid prototyping allowed the study of different chip-based approaches, i.e. sheathless, open sheathflow and electrode support channel designs, for coupling MCE to ESI-MS. The performance was evaluated with fluorescence microscopy and mass spectrometric detection. The obtained results revealed that the detection sensitivity obtained in such Y-channel chips with integrated hydrogel membranes was superior because sample dilution or loss was prevented. Furthermore, band broadening is reduced compared to similar open structures without a membrane.
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Microfluidic electrophoretic non-enzymatic kanamycin assay making use of a stirring bar functionalized with gold-labeled aptamer, of a fluorescent DNA probe, and of signal amplification via hybridization chain reaction. Mikrochim Acta 2018; 185:181. [PMID: 29594631 DOI: 10.1007/s00604-017-2635-z] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2017] [Accepted: 12/22/2017] [Indexed: 01/12/2023]
Abstract
The authors describe an enzyme-free aptamer-based assay for the determination of the model antibiotic kanamycin (Kana). The method is making use of (a) microfluidic chip electrophoresis; (b) a stirring bar carrying a gold-labeled aptamer probe, and (c) the hybridization chain reaction (HCR) for signal amplification. Firstly, a stirring bar (length: 1 cm; diameter: 0.2 mm) was modified with a large amount of duplex DNA and then hybridized with aptamer and its partially complementary chains (cDNA). In the presence of Kana, the binding between the Kana and aptamer unwinds the duplex structures and releases a corresponding amount of cDNA into the supernatant. The released cDNA triggers the HCR in the presence of H1 and H2 DNA hairpin to produce a large amount of duplex DNA chains with different lengths. At the same time, the amounts of H1 and H2 are reduced. The decreased signal of H1/H2 after several HCR cycles can be used to quantify kana in the 1 pg·mL-1 to 10 ng·mL-1, with a detection limit of 0.29 pg·mL-1. The signal is generated by reading the fluorescence, best at excitation/emission maxima of 470/525 nm. The whole detection process takes 3 min only. The assay was employed to the detection of Kana in spiked milk and fish samples. Results are consistent with those of an enzyme linked immunosorbent assay. The assay has high throughput, high selectivity, and high amplification capability. Graphical abstract Schematic of a stirring bar functionalized with gold-labeled aptamer acting as the capture probe. It can capture the target and release primer simultaneously. The primer triggers the hybridization chain reaction inducing the consumption of H1 and H2. After a certain reaction time, the mixture is injected into the MCE platform for microfluidic electrophoretic separation and fluorometric detection.
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21
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Bahmanzadeh S, Noroozifar M. Fabrication of modified carbon paste electrodes with Ni-doped Lewatit FO36 nano ion exchange resin for simultaneous determination of epinephrine, paracetamol and tryptophan. J Electroanal Chem (Lausanne) 2018. [DOI: 10.1016/j.jelechem.2017.11.073] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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22
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Interinstrumental Transfer of a Chiral Capillary Electrophoretic Method: The Use of Robustness Test Information to Overcome Differences in Detector and Data-Handling Specifications. Chromatographia 2017. [DOI: 10.1007/s10337-017-3429-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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23
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Lian DS, Zeng HS. Capillary Electrophoresis Based on Nucleic Acid Detection as Used in Food Analysis. Compr Rev Food Sci Food Saf 2017; 16:1281-1295. [DOI: 10.1111/1541-4337.12297] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2017] [Revised: 07/14/2017] [Accepted: 07/19/2017] [Indexed: 12/21/2022]
Affiliation(s)
- Dong-Sheng Lian
- Guangzhou Women and Children's Medical Center of Guangzhou Medical University; NO. 9 at Jinsui Rd., Tianhe District Guangzhou Guangdong China
| | - Hua-Song Zeng
- Guangzhou Women and Children's Medical Center of Guangzhou Medical University; NO. 9 at Jinsui Rd., Tianhe District Guangzhou Guangdong China
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24
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Viefhues M, Eichhorn R. DNA dielectrophoresis: Theory and applications a review. Electrophoresis 2017; 38:1483-1506. [PMID: 28306161 DOI: 10.1002/elps.201600482] [Citation(s) in RCA: 54] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2016] [Revised: 03/07/2017] [Accepted: 03/08/2017] [Indexed: 01/24/2023]
Abstract
Dielectrophoresis is the migration of an electrically polarizable particle in an inhomogeneous electric field. This migration can be exploited for several applications with (bio)molecules or cells. Dielectrophoresis is a noninvasive technique; therefore, it is very convenient for (selective) manipulation of (bio)molecules or cells. In this review, we will focus on DNA dielectrophoresis as this technique offers several advantages in trapping and immobilization, separation and purification, and analysis of DNA molecules. We present and discuss the underlying theory of the most important forces that have to be considered for applications with dielectrophoresis. Moreover, a review of DNA dielectrophoresis applications is provided to present the state-of-the-art and to offer the reader a perspective of the advances and current limitations of DNA dielectrophoresis.
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Affiliation(s)
- Martina Viefhues
- Experimental Biophysics and Applied Nanoscience, Faculty of Physics, Bielefeld University, Bielefeld, Germany
| | - Ralf Eichhorn
- Nordita, Royal Institute of Technology and Stockholm University, Stockholm, Sweden
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25
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Štěpánová S, Kašička V. Analysis of proteins and peptides by electromigration methods in microchips. J Sep Sci 2016; 40:228-250. [PMID: 27704694 DOI: 10.1002/jssc.201600962] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2016] [Revised: 09/14/2016] [Accepted: 09/14/2016] [Indexed: 11/07/2022]
Abstract
This review presents the developments and applications of microchip electromigration methods in the separation and analysis of peptides and proteins in the period 2011-mid-2016. The developments in sample preparation and preconcentration, microchannel material, and surface treatment are described. Separations by various microchip electromigration methods (zone electrophoresis in free and sieving media, affinity electrophoresis, isotachophoresis, isoelectric focusing, electrokinetic chromatography, and electrochromatography) are demonstrated. Advances in detection methods are reported and novel applications in the areas of proteomics and peptidomics, quality control of peptide and protein pharmaceuticals, analysis of proteins and peptides in biomatrices, and determination of physicochemical parameters are shown.
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Affiliation(s)
- Sille Štěpánová
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic
| | - Václav Kašička
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic
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26
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Wang J, Yang L, Liu L, Wu H, Wang J, Jiang P, Jiang X, Qiu L. Investigation of multivalent interactions between conjugate of quantum dots with c-Myc peptide tag and the anti-c-Myc antibody by capillary electrophoresis with fluorescence detection. J Sep Sci 2016; 39:4653-4659. [DOI: 10.1002/jssc.201600931] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2016] [Revised: 09/18/2016] [Accepted: 09/24/2016] [Indexed: 11/07/2022]
Affiliation(s)
- Jianhao Wang
- School of Pharmaceutical Engineering and Life Science; Changzhou University; Changzhou Jiangsu People's Republic of China
| | - Li Yang
- School of Pharmaceutical Engineering and Life Science; Changzhou University; Changzhou Jiangsu People's Republic of China
| | - Li Liu
- School of Pharmaceutical Engineering and Life Science; Changzhou University; Changzhou Jiangsu People's Republic of China
| | - Hao Wu
- School of Pharmaceutical Engineering and Life Science; Changzhou University; Changzhou Jiangsu People's Republic of China
| | - Jianpeng Wang
- School of Pharmaceutical Engineering and Life Science; Changzhou University; Changzhou Jiangsu People's Republic of China
| | - Pengju Jiang
- School of Pharmaceutical Engineering and Life Science; Changzhou University; Changzhou Jiangsu People's Republic of China
- Key Laboratory of Synthetic Biology, Shanghai Institutes for Biological Sciences; Chinese Academy of Sciences; Shanghai People's Republic of China
| | - Xiyuan Jiang
- Kunshan affiliated Hospital of Nanjing University of Chinese Medicine; Kunshan Jiangsu People's Republic of China
| | - Lin Qiu
- School of Pharmaceutical Engineering and Life Science; Changzhou University; Changzhou Jiangsu People's Republic of China
- State Key Laboratory of Coordination Chemistry; Nanjing University; Nanjing Jiangsu People's Republic of China
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27
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Capillary electrophoresis hyphenated with UV-native-laser induced fluorescence detection (CE/UV-native-LIF). Electrophoresis 2016; 38:135-149. [DOI: 10.1002/elps.201600248] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2016] [Revised: 07/11/2016] [Accepted: 07/12/2016] [Indexed: 01/01/2023]
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28
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Štěpánová S, Kašička V. Recent applications of capillary electromigration methods to separation and analysis of proteins. Anal Chim Acta 2016; 933:23-42. [DOI: 10.1016/j.aca.2016.06.006] [Citation(s) in RCA: 78] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2016] [Revised: 05/10/2016] [Accepted: 06/03/2016] [Indexed: 10/21/2022]
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29
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Galievsky VA, Stasheuski AS, Krylov SN. "Getting the best sensitivity from on-capillary fluorescence detection in capillary electrophoresis" - A tutorial. Anal Chim Acta 2016; 935:58-81. [PMID: 27543015 DOI: 10.1016/j.aca.2016.06.015] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2016] [Revised: 06/09/2016] [Accepted: 06/11/2016] [Indexed: 01/09/2023]
Abstract
Capillary electrophoresis with Laser-Induced Fluorescence (CE-LIF) detection is being applied to new analytical problems which challenge both the power of CE separation and the sensitivity of LIF detection. On-capillary LIF detection is much more practical than post-capillary detection in a sheath-flow cell. Therefore, commercial CE instruments utilize solely on-capillary CE-LIF detection with a Limit of Detection (LOD) in the nM range, while there are multiple applications of CE-LIF that require pM or lower LODs. This tutorial analyzes all aspects of on-capillary LIF detection in CE in an attempt to identify means for improving LOD of CE-LIF with on-capillary detection. We consider principles of signal enhancement and noise reduction, as well as relevant areas of fluorophore photochemistry and fluorescent microscopy.
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Affiliation(s)
- Victor A Galievsky
- Department of Chemistry and Centre for Research on Biomolecular Interactions, York University, Toronto, Ontario M3J 1P3, Canada
| | - Alexander S Stasheuski
- Department of Chemistry and Centre for Research on Biomolecular Interactions, York University, Toronto, Ontario M3J 1P3, Canada
| | - Sergey N Krylov
- Department of Chemistry and Centre for Research on Biomolecular Interactions, York University, Toronto, Ontario M3J 1P3, Canada.
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30
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The use of polarity switching for the sensitive determination of nitrate in human cerebrospinal fluid by capillary electrophoresis with contactless conductivity detection. J Chromatogr A 2016; 1447:148-54. [DOI: 10.1016/j.chroma.2016.04.038] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2016] [Revised: 04/05/2016] [Accepted: 04/14/2016] [Indexed: 01/04/2023]
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31
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Guzman NA, Guzman DE. An emerging micro-scale immuno-analytical diagnostic tool to see the unseen. Holding promise for precision medicine and P4 medicine. J Chromatogr B Analyt Technol Biomed Life Sci 2016; 1021:14-29. [DOI: 10.1016/j.jchromb.2015.11.026] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2015] [Revised: 11/15/2015] [Accepted: 11/17/2015] [Indexed: 01/10/2023]
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32
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Oukacine F, Quirino JP, Mesbah K, Taverna M. Capillary electrophoretic focusing of covalently derivatized protein induced by surfactant. Electrophoresis 2016; 37:1151-4. [DOI: 10.1002/elps.201600030] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2016] [Revised: 02/21/2016] [Accepted: 02/22/2016] [Indexed: 01/10/2023]
Affiliation(s)
- Farid Oukacine
- Université Grenoble Alpes; DPM UMR 5063; CNRS Grenoble France
| | - Joselito P. Quirino
- Australian Centre for Research on Separation Science, School of Physical Sciences-Chemistry; University of Tasmania; Hobart Tasmania Australia
| | - Kiarach Mesbah
- Inst Galien Paris Sud; Fac Pharm; 5 Rue JB Clement, F-92290 Chatenay Malabry France
| | - Myriam Taverna
- Inst Galien Paris Sud; Fac Pharm; 5 Rue JB Clement, F-92290 Chatenay Malabry France
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33
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Boutonnet A, Morin A, Petit P, Vicendo P, Poinsot V, Couderc F. Pulsed lasers versus continuous light sources in capillary electrophoresis and fluorescence detection studies: Photodegradation pathways and models. Anal Chim Acta 2016; 912:146-55. [DOI: 10.1016/j.aca.2016.01.036] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2015] [Revised: 01/19/2016] [Accepted: 01/24/2016] [Indexed: 10/22/2022]
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34
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Chow EKH. JALA Special Issue: High-Throughput Imaging. ACTA ACUST UNITED AC 2016; 21:234-7. [PMID: 26887980 DOI: 10.1177/2211068216629734] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2016] [Indexed: 11/17/2022]
Affiliation(s)
- Edward Kai-Hua Chow
- Cancer Science Institute of Singapore, Department of Pharmacology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
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35
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Girard M, Kane A, Boucher S. Capillary Electrophoresis Method for the Assessment of Erythropoiesis-Stimulating Agents in Final Formulations. Methods Mol Biol 2016; 1466:165-177. [PMID: 27473489 DOI: 10.1007/978-1-4939-4014-1_13] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Capillary electrophoresis (CE) comprises several separation modes that can be used to characterize proteins in terms of physico-chemical properties such as isoelectric point or molecular weight, or in terms of purity/heterogeneity for the presence of charge or size variants. In glycoproteins the heterogeneity occurring as a consequence of variable amounts of terminal sialic acid residues on glycan moieties can be detected by CE. As such, a capillary zone electrophoresis (CZE) method was found suitable for the detection of isoforms of several erythropoiesis-stimulating agents (Bietlot and Girard, J Chromatogr A 759:177-184, 1997; Boucher et al., J Pharm Biomed Anal 71:207-213, 2012). In particular, the method can be used to analyze finished products containing erythropoietin-α, erythropoietin-β, or darbepoetin-α regardless of the formulation and without the need for sample pretreatment. The major excipients encountered in the various formulations included polysorbate 80, polysorbate 20, or human serum albumin. The ability of the method to resolve isoforms of the active ingredient in finished product enables the comparison of the isoform profile with that of the corresponding drug substance, allowing the assessment of the structural integrity and content of the active ingredients in finished products.
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Affiliation(s)
- Michel Girard
- Centre for Biologics Evaluation, Biologics and Genetic Therapies Directorate, Health Canada, 251 Sir Frederick Banting Driveway, Ottawa, ON, Canada, K1A 0K9.
| | - Anita Kane
- Centre for Biologics Evaluation, Biologics and Genetic Therapies Directorate, Health Canada, 251 Sir Frederick Banting Driveway, Ottawa, ON, Canada, K1A 0K9
| | - Sylvie Boucher
- Centre for Biologics Evaluation, Biologics and Genetic Therapies Directorate, Health Canada, 251 Sir Frederick Banting Driveway, Ottawa, ON, Canada, K1A 0K9
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36
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Kašička V. Recent developments in capillary and microchip electroseparations of peptides (2013-middle 2015). Electrophoresis 2015; 37:162-88. [DOI: 10.1002/elps.201500329] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2015] [Revised: 08/25/2015] [Accepted: 08/25/2015] [Indexed: 12/16/2022]
Affiliation(s)
- Václav Kašička
- Institute of Organic Chemistry and Biochemistry, v.v.i; The Czech Academy of Sciences; Prague Czech Republic
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37
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Geissler D, Belder D. Two-photon excitation in chip electrophoresis enabling label-free fluorescence detection in non-UV transparent full-body polymer chips. Electrophoresis 2015; 36:2976-82. [DOI: 10.1002/elps.201500192] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2015] [Revised: 07/15/2015] [Accepted: 07/16/2015] [Indexed: 12/16/2022]
Affiliation(s)
- David Geissler
- Universität Leipzig; Institut für Analytische Chemie; Leipzig Germany
| | - Detlev Belder
- Universität Leipzig; Institut für Analytische Chemie; Leipzig Germany
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38
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Valera E, Bailey RC. Eavesdropping on interactions. Nat Chem 2015; 7:767-9. [DOI: 10.1038/nchem.2355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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39
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De Cock B, Van Eeckhaut A, Stiens J, Mangelings D, Vander Heyden Y. Interinstrumental method transfer of a capillary electrophoretic separation of angiotensin II and five derivatives: Evaluation and update of earlier developed guidelines. Electrophoresis 2015. [DOI: 10.1002/elps.201500273] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Bart De Cock
- Department of Analytical Chemistry and Pharmaceutical Technology, Center for Pharmaceutical Research; Vrije Universiteit Brussel (VUB); Brussels Belgium
| | - Ann Van Eeckhaut
- Department of Pharmaceutical Chemistry, Drug Analysis and Drug Information, Center for Pharmaceutical Research; Vrije Universiteit Brussel (VUB); Brussels Belgium
| | - Johan Stiens
- Laboratory of Micro- and Photoelectronics, LAMI-ETRO; Vrije Universiteit Brussel (VUB); Brussels Belgium
| | - Debby Mangelings
- Department of Analytical Chemistry and Pharmaceutical Technology, Center for Pharmaceutical Research; Vrije Universiteit Brussel (VUB); Brussels Belgium
| | - Yvan Vander Heyden
- Department of Analytical Chemistry and Pharmaceutical Technology, Center for Pharmaceutical Research; Vrije Universiteit Brussel (VUB); Brussels Belgium
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40
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Kartsova LA, Bessonova EA. Biomedical applications of capillary electrophoresis. RUSSIAN CHEMICAL REVIEWS 2015. [DOI: 10.1070/rcr4492] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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41
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Su BH, Tu YS, Lin OA, Harn YC, Shen MY, Tseng YJ. Rule-based classification models of molecular autofluorescence. J Chem Inf Model 2015; 55:434-45. [PMID: 25625768 DOI: 10.1021/ci5007432] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Fluorescence-based detection has been commonly used in high-throughput screening (HTS) assays. Autofluorescent compounds, which can emit light in the absence of artificial fluorescent markers, often interfere with the detection of fluorophores and result in false positive signals in these assays. This interference presents a major issue in fluorescence-based screening techniques. In an effort to reduce the time and cost that will be spent on prescreening of autofluorescent compounds, in silico autofluorescence prediction models were developed for selected fluorescence-based assays in this study. Five prediction models were developed based on the respective fluorophores used in these HTS assays, which absorb and emit light at specific wavelengths (excitation/emission): Alexa Fluor 350 (A350) (340 nm/450 nm), 7-amino-4-trifluoromethyl-coumarin (AFC) (405 nm/520 nm), Alexa Fluor 488 (A488) (480 nm/540 nm), Rhodamine (547 nm/598 nm), and Texas Red (547 nm/618 nm). The C5.0 rule-based classification algorithm and PubChem 2D chemical structure fingerprints were used to develop prediction models. To optimize the accuracies of these prediction models despite the highly imbalanced ratio of fluorescent versus nonfluorescent compounds presented in the collected data sets, oversampling and undersampling strategies were applied. The average final accuracy achieved for the training set was 97%, and that for the testing set was 92%. In addition, five external data sets were used to further validate the models. Ultimately, 14 representative structural features (or rules) were determined to efficiently predict autofluorescence in data sets containing both fluorescent and nonfluorescent compounds. Several cases were illustrated in this study to demonstrate the applicability of these rules.
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Affiliation(s)
- Bo-Han Su
- Department of Computer Science and Information Engineering and ‡Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University , No. 1 Sec. 4, Roosevelt Road, Taipei, Taiwan 106
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42
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Aturki Z, Rocco A, Rocchi S, Fanali S. Current applications of miniaturized chromatographic and electrophoretic techniques in drug analysis. J Pharm Biomed Anal 2014; 101:194-220. [DOI: 10.1016/j.jpba.2014.03.041] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2014] [Accepted: 03/24/2014] [Indexed: 12/20/2022]
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43
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Zhao J, Hu DJ, Lao K, Yang ZM, Li SP. Advance of CE and CEC in phytochemical analysis (2012–2013). Electrophoresis 2014; 35:205-24. [PMID: 24114928 DOI: 10.1002/elps.201300321] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2013] [Revised: 09/17/2013] [Accepted: 09/17/2013] [Indexed: 12/11/2022]
Abstract
This article presents an overview of the advance of CE and CEC in phytochemical analysis, based on the literature not mentioned in our previous review papers [Chen, X. J., Zhao, J., Wang, Y. T., Huang, L. Q., Li, S. P., Electrophoresis 2012, 33, 168–179], mainly covering the years 2012–2013. In this article, attention is paid to online preconcentration, rapid separation, and sensitive detection. Selected examples illustrate the applicability of CE and CEC in biomedical, pharmaceutical, environmental, and food analysis. Finally, some general conclusions and future perspectives are given.
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Creamer JS, Oborny NJ, Lunte SM. Recent advances in the analysis of therapeutic proteins by capillary and microchip electrophoresis. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2014; 6:5427-5449. [PMID: 25126117 PMCID: PMC4128283 DOI: 10.1039/c4ay00447g] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
The development of therapeutic proteins and peptides is an expensive and time-intensive process. Biologics, which have become a multi-billion dollar industry, are chemically complex products that require constant observation during each stage of development and production. Post-translational modifications along with chemical and physical degradation from oxidation, deamidation, and aggregation, lead to high levels of heterogeneity that affect drug quality and efficacy. The various separation modes of capillary electrophoresis (CE) are commonly utilized to perform quality control and assess protein heterogeneity. This review attempts to highlight the most recent developments and applications of CE separation techniques for the characterization of protein and peptide therapeutics by focusing on papers accepted for publication in the in the two-year period between January 2012 and December 2013. The separation principles and technological advances of CE, capillary gel electrophoresis, capillary isoelectric focusing, capillary electrochromatography and CE-mass spectrometry are discussed, along with exciting new applications of these techniques to relevant pharmaceutical issues. Also included is a small selection of papers on microchip electrophoresis to show the direction this field is moving with regards to the development of inexpensive and portable analysis systems for on-site, high-throughput analysis.
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Affiliation(s)
- Jessica S. Creamer
- Department of Pharmaceutical Chemistry, University of Kansas, Lawrence, KS, USA
- Ralph N. Adams Institute for Bioanalytical Chemistry, University of Kansas, Lawrence, KS, USA
| | - Nathan J. Oborny
- Department of Bioengineering, University of Kansas, Lawrence, KS, USA
- Ralph N. Adams Institute for Bioanalytical Chemistry, University of Kansas, Lawrence, KS, USA
| | - Susan M. Lunte
- Department of Pharmaceutical Chemistry, University of Kansas, Lawrence, KS, USA
- Department of Bioengineering, University of Kansas, Lawrence, KS, USA
- Ralph N. Adams Institute for Bioanalytical Chemistry, University of Kansas, Lawrence, KS, USA
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45
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Determination of fluoroquinolone antibiotics by microchip capillary electrophoresis along with time-resolved sensitized luminescence of their terbium(III) complexes. Mikrochim Acta 2014. [DOI: 10.1007/s00604-014-1266-x] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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46
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Schwarzkopf F, Scholl T, Ohla S, Belder D. Improving sensitivity in microchip electrophoresis coupled to ESI-MS/MS on the example of a cardiac drug mixture. Electrophoresis 2014; 35:1880-6. [DOI: 10.1002/elps.201300615] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2013] [Revised: 02/25/2014] [Accepted: 02/25/2014] [Indexed: 12/19/2022]
Affiliation(s)
| | - Tobias Scholl
- Institut für Analytische Chemie; Universität Leipzig; Leipzig Germany
| | - Stefan Ohla
- Institut für Analytische Chemie; Universität Leipzig; Leipzig Germany
| | - Detlev Belder
- Institut für Analytische Chemie; Universität Leipzig; Leipzig Germany
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47
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Kimura A, Shimazaki Y. Micro-scale extraction and analysis of intact carboxylesterase after trapping on an immunoaffinity membrane surface. Appl Biochem Biotechnol 2014; 172:4053-61. [PMID: 24610038 DOI: 10.1007/s12010-014-0807-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2013] [Accepted: 02/12/2014] [Indexed: 02/05/2023]
Abstract
Porcine liver carboxylesterase was captured using an immunoaffinity membrane, which was prepared by separating an anti-porcine esterase antibody using non-denaturing two-dimensional electrophoresis, followed by transfer to a polyvinylidene difluoride membrane and staining. The activity of this esterase was 0.008 units after it was captured in the tiny spaces (4 mm(2)) of this membrane and eluted by rinsing with 5 μL of aspartic acid solution. The molecular mass of the eluted esterase was m/z 61,885 according to matrix-assisted laser desorption/ionization time-of-flight mass spectrometry after the purification of this enzyme from the porcine liver cytosol. The purified enzyme's activity was inhibited by 6,9-diamino-2-ethoxyacridine, and this inhibition was retained even after extracting the enzyme from the immunoaffinity membrane. These results indicate that micro-scale extraction and analysis of a carboxylesterase are possible when the enzyme is trapped using an immunoaffinity membrane and eluted with aspartic acid.
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Affiliation(s)
- Ayaka Kimura
- Graduate School of Science and Engineering (Science section), Ehime University, Matsuyama, 790-8577, Japan
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48
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Xing X, Yang X, Liu T. Electrochemical Behavior of Cu Electrode and Its Application in CE Determination of Polyols. Chromatographia 2013. [DOI: 10.1007/s10337-013-2603-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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49
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Kašička V. Recent developments in capillary and microchip electroseparations of peptides (2011-2013). Electrophoresis 2013; 35:69-95. [PMID: 24255019 DOI: 10.1002/elps.201300331] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2013] [Revised: 09/10/2013] [Accepted: 09/10/2013] [Indexed: 01/15/2023]
Abstract
The review presents a comprehensive survey of recent developments and applications of capillary and microchip electroseparation methods (zone electrophoresis, ITP, IEF, affinity electrophoresis, EKC, and electrochromatography) for analysis, isolation, purification, and physicochemical and biochemical characterization of peptides. Advances in the investigation of electromigration properties of peptides, in the methodology of their analysis, including sample preseparation, preconcentration and derivatization, adsorption suppression and EOF control, as well as in detection of peptides, are presented. New developments in particular CE and CEC modes are reported and several types of their applications to peptide analysis are described: conventional qualitative and quantitative analysis, determination in complex (bio)matrices, monitoring of chemical and enzymatical reactions and physical changes, amino acid, sequence and chiral analysis, and peptide mapping of proteins. Some micropreparative peptide separations are shown and capabilities of CE and CEC techniques to provide relevant physicochemical characteristics of peptides are demonstrated.
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Affiliation(s)
- Václav Kašička
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Prague, Czech Republic
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Poinsot V, Ong-Meang V, Gavard P, Couderc F. Recent advances in amino acid analysis by capillary electromigration methods, 2011-2013. Electrophoresis 2013; 35:50-68. [DOI: 10.1002/elps.201300306] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2013] [Revised: 09/11/2013] [Accepted: 09/11/2013] [Indexed: 12/28/2022]
Affiliation(s)
- Véréna Poinsot
- Laboratoire des IMRCP; Université Paul Sabatier; Toulouse France
| | | | - Pierre Gavard
- Laboratoire des IMRCP; Université Paul Sabatier; Toulouse France
| | - François Couderc
- Laboratoire des IMRCP; Université Paul Sabatier; Toulouse France
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