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For: Liu W, Song Q, Cao Y, Zhao Y, Huo H, Wang Y, Song Y, Li J, Tu P. Advanced liquid chromatography-mass spectrometry enables merging widely targeted metabolomics and proteomics. Anal Chim Acta 2019;1069:89-97. [DOI: 10.1016/j.aca.2019.04.013] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2019] [Revised: 04/01/2019] [Accepted: 04/08/2019] [Indexed: 02/07/2023]
Number Cited by Other Article(s)
1
Li T, Zhang K, Liu R, Ren L, Li X, Li J, Liu W, Song Y. Direct infusion-multiple reaction monitoring cubed (DI-MRM3) enables widely targeted bi-omics of Colla Corii Asini (Chinese name: Ejiao). Food Chem 2024;447:138969. [PMID: 38507947 DOI: 10.1016/j.foodchem.2024.138969] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Revised: 02/22/2024] [Accepted: 03/05/2024] [Indexed: 03/22/2024]
2
Li W, Gong X, Niu X, Zhou Y, Ren L, Man Z, Tu P, Xiong X, Liu W, Song Y. Quantitative comparison of bile acid glucuronides sub-metabolome between intrahepatic cholestasis and healthy pregnant women. Anal Bioanal Chem 2024:10.1007/s00216-024-05430-6. [PMID: 38990360 DOI: 10.1007/s00216-024-05430-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Revised: 06/15/2024] [Accepted: 06/27/2024] [Indexed: 07/12/2024]
3
Ovbude ST, Sharmeen S, Kyei I, Olupathage H, Jones J, Bell RJ, Powers R, Hage DS. Applications of chromatographic methods in metabolomics: A review. J Chromatogr B Analyt Technol Biomed Life Sci 2024;1239:124124. [PMID: 38640794 DOI: 10.1016/j.jchromb.2024.124124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 03/11/2024] [Accepted: 04/10/2024] [Indexed: 04/21/2024]
4
Jahan S, Ansari UA, Srivastava AK, Aldosari S, Alabdallat NG, Siddiqui AJ, Khan A, Albadrani HM, Sarkar S, Khan B, Adnan M, Pant AB. A protein-miRNA biomic analysis approach to explore neuroprotective potential of nobiletin in human neural progenitor cells (hNPCs). Front Pharmacol 2024;15:1343569. [PMID: 38348393 PMCID: PMC10860404 DOI: 10.3389/fphar.2024.1343569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Accepted: 01/04/2024] [Indexed: 02/15/2024]  Open
5
Kiseleva OI, Kurbatov IY, Arzumanian VA, Ilgisonis EV, Zakharov SV, Poverennaya EV. The Expectation and Reality of the HepG2 Core Metabolic Profile. Metabolites 2023;13:908. [PMID: 37623852 PMCID: PMC10456947 DOI: 10.3390/metabo13080908] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 07/29/2023] [Accepted: 08/01/2023] [Indexed: 08/26/2023]  Open
6
Révész Á, Hevér H, Steckel A, Schlosser G, Szabó D, Vékey K, Drahos L. Collision energies: Optimization strategies for bottom-up proteomics. MASS SPECTROMETRY REVIEWS 2023;42:1261-1299. [PMID: 34859467 DOI: 10.1002/mas.21763] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Revised: 11/17/2021] [Accepted: 11/17/2021] [Indexed: 06/07/2023]
7
Xue Z, Zeng J, Li Y, Meng B, Gong X, Zhao Y, Dai X. Proteomics reveals that cell density could affect the efficacy of drug treatment. Biochem Biophys Rep 2022;33:101403. [PMID: 36561432 PMCID: PMC9763681 DOI: 10.1016/j.bbrep.2022.101403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Revised: 11/22/2022] [Accepted: 11/30/2022] [Indexed: 12/13/2022]  Open
8
Widely quasi-quantitative analysis of both metabolites and tryptic peptides in animal-originated medicinal materials: Bufonis Venenum as a case. J Pharm Biomed Anal 2022;223:115143. [DOI: 10.1016/j.jpba.2022.115143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Revised: 10/20/2022] [Accepted: 11/03/2022] [Indexed: 11/06/2022]
9
Gong X, Liu W, Cao Y, Wang R, Liang N, Cao L, Li J, Tu P, Song Y. Integrated strategy for widely targeted metabolome characterization of Peucedani Radix. J Chromatogr A 2022;1678:463360. [PMID: 35908514 DOI: 10.1016/j.chroma.2022.463360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Revised: 07/18/2022] [Accepted: 07/20/2022] [Indexed: 11/26/2022]
10
Cao Y, Li W, Gong X, Niu X, Zheng J, Yu J, Li J, Tu P, Song Y. Widely quasi-quantitative analysis enables temporal bile acids-targeted metabolomics in rat after oral administration of ursodeoxycholic acid. Anal Chim Acta 2022;1212:339885. [DOI: 10.1016/j.aca.2022.339885] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2022] [Accepted: 04/28/2022] [Indexed: 12/12/2022]
11
Zhang K, Gong X, Wang Q, Tu P, Li J, Song Y. Rapid tryptic peptide mapping of human serum albumin using DI-MS/MSALL. RSC Adv 2022;12:9868-9882. [PMID: 35424948 PMCID: PMC8963265 DOI: 10.1039/d1ra08717g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Accepted: 03/13/2022] [Indexed: 11/27/2022]  Open
12
Preparation of mixed-mode stationary phase for separation of peptides and proteins in high performance liquid chromatography. Sci Rep 2022;12:4061. [PMID: 35260726 PMCID: PMC8904576 DOI: 10.1038/s41598-022-08074-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Accepted: 03/01/2022] [Indexed: 12/31/2022]  Open
13
A novel hybrid scan approach enabling the ion-mobility separation and the alternate data-dependent and data-independent acquisitions (HDDIDDA): Its combination with off-line two-dimensional liquid chromatography for comprehensively characterizing the multicomponents from Compound Danshen Dripping Pill. Anal Chim Acta 2022;1193:339320. [PMID: 35058017 DOI: 10.1016/j.aca.2021.339320] [Citation(s) in RCA: 32] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2021] [Revised: 11/22/2021] [Accepted: 11/23/2021] [Indexed: 12/12/2022]
14
Reveglia P, Raimondo ML, Masi M, Cimmino A, Nuzzo G, Corso G, Fontana A, Carlucci A, Evidente A. Untargeted and Targeted LC-MS/MS Based Metabolomics Study on In Vitro Culture of Phaeoacremonium Species. J Fungi (Basel) 2022;8:jof8010055. [PMID: 35049995 PMCID: PMC8780456 DOI: 10.3390/jof8010055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Revised: 12/30/2021] [Accepted: 01/03/2022] [Indexed: 11/16/2022]  Open
15
Muguruma Y, Nunome M, Inoue K. A Review on the Foodomics Based on Liquid Chromatography Mass Spectrometry. Chem Pharm Bull (Tokyo) 2022;70:12-18. [PMID: 34980727 DOI: 10.1248/cpb.c21-00765] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
16
Online pressurized liquid extraction enables directly chemical analysis of herbal medicines: A mini review. J Pharm Biomed Anal 2021;205:114332. [PMID: 34455204 DOI: 10.1016/j.jpba.2021.114332] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Revised: 08/12/2021] [Accepted: 08/17/2021] [Indexed: 12/14/2022]
17
Reveglia P, Paolillo C, Ferretti G, De Carlo A, Angiolillo A, Nasso R, Caputo M, Matrone C, Di Costanzo A, Corso G. Challenges in LC-MS-based metabolomics for Alzheimer's disease early detection: targeted approaches versus untargeted approaches. Metabolomics 2021;17:78. [PMID: 34453619 PMCID: PMC8403122 DOI: 10.1007/s11306-021-01828-w] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Accepted: 08/06/2021] [Indexed: 01/22/2023]
18
[Analysis of chemical components of Chinese medicine Ligustici Radix by achiral-chiral liquid chromatography-predictive multiple reaction monitoring]. Se Pu 2021;39:642-651. [PMID: 34227325 PMCID: PMC9404100 DOI: 10.3724/sp.j.1123.2020.08024] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]  Open
19
Cheng M, Yao C, Li Y, Li Z, Li H, Yao S, Qu H, Li J, Wei W, Zhang J, Guo DA. A strategy for practical authentication of medicinal plants in traditional Chinese medicine prescription, paeony root in ShaoYao-GanCao decoction as a case study. J Sep Sci 2021;44:2427-2437. [PMID: 33885223 DOI: 10.1002/jssc.202100028] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2021] [Revised: 03/30/2021] [Accepted: 04/14/2021] [Indexed: 12/13/2022]
20
Liu W, Yu J, Li W, Jiang Z, Li T, Cao L, Tu P, Li J, Song Y. Simultaneous determination of eight tryptic peptides in musk using high-performance liquid chromatography coupled with tandem mass spectrometry. J Chromatogr B Analyt Technol Biomed Life Sci 2021;1171:122624. [PMID: 33756451 DOI: 10.1016/j.jchromb.2021.122624] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Revised: 02/07/2021] [Accepted: 02/22/2021] [Indexed: 11/19/2022]
21
Xu X. Capillary Electrophoresis-Mass Spectrometry for Cancer Metabolomics. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2021;1280:189-200. [PMID: 33791983 DOI: 10.1007/978-3-030-51652-9_13] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
22
Amna S, Qamar S, Turab Naqvi AA, Al-Huqail AA, Qureshi MI. Role of sulfur in combating arsenic stress through upregulation of important proteins, and in-silico analysis to study the interaction between phosphate transporter (PHO1), arsenic and phosphate in spinach. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020;157:348-358. [PMID: 33189055 DOI: 10.1016/j.plaphy.2020.11.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Accepted: 11/02/2020] [Indexed: 06/11/2023]
23
Ke Z, Ting L, Xing-Cheng G, Li-Bo C, Jun L, Peng-Fei T, Qing-Qing S, Yue-Lin S. Online energy-resolved MS boosts the potential of LC-MS towards metabolite characterization of salidroside and tyrosol. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2020;12:5120-5127. [PMID: 33057462 DOI: 10.1039/d0ay01639j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
24
Pengwei G, Song Q, Li T, Cao L, Tang H, Wang Y, Tu P, Zheng J, Song Y, Li J. Confirmative Structural Annotation for Metabolites of (R)-7,3'-Dihydroxy-4'-methoxy-8-methylflavane, A Natural Sweet Taste Modulator, by Liquid Chromatography-Three-Dimensional Mass Spectrometry. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2020;68:12454-12466. [PMID: 33084329 DOI: 10.1021/acs.jafc.0c05154] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
25
Challenges in Analysis of Hydrophilic Metabolites Using Chromatography Coupled with Mass Spectrometry. JOURNAL OF ANALYSIS AND TESTING 2020. [DOI: 10.1007/s41664-020-00126-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
26
Liu W, Cao Y, Ren Y, Xu X, He L, Xia R, Tu P, Wang Y, Song Y, Li J. Simultaneously quantitative analysis of peptides and chemical components in Cervus and Cucumis polypeptide injection (Songmeile®) using reversed phase liquid chromatography-hydrophilic interaction liquid chromatography–tandem mass spectrometry. J Chromatogr A 2020;1617:460827. [DOI: 10.1016/j.chroma.2019.460827] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2019] [Revised: 12/21/2019] [Accepted: 12/24/2019] [Indexed: 12/17/2022]
27
Qian Z, Huang Q, Li C, Chen J, Li G, Ma H, Xie J. Analysis of ginseng root and leaf by multiple columns and detections liquid chromatography. J LIQ CHROMATOGR R T 2020. [DOI: 10.1080/10826076.2020.1730890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
28
Teclemariam ET, Pergande MR, Cologna SM. Considerations for mass spectrometry-based multi-omic analysis of clinical samples. Expert Rev Proteomics 2020;17:99-107. [PMID: 31996049 DOI: 10.1080/14789450.2020.1724540] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
29
Cao Y, Chai C, Chang A, Xu X, Song Q, Liu W, Li J, Song Y, Tu P. Optimal collision energy is an eligible molecular descriptor to boost structural annotation: An application for chlorogenic acid derivatives-focused chemical profiling. J Chromatogr A 2020;1609:460515. [DOI: 10.1016/j.chroma.2019.460515] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2019] [Revised: 08/25/2019] [Accepted: 09/03/2019] [Indexed: 10/26/2022]
30
González-Riano C, Dudzik D, Garcia A, Gil-de-la-Fuente A, Gradillas A, Godzien J, López-Gonzálvez Á, Rey-Stolle F, Rojo D, Ruperez FJ, Saiz J, Barbas C. Recent Developments along the Analytical Process for Metabolomics Workflows. Anal Chem 2019;92:203-226. [PMID: 31625723 DOI: 10.1021/acs.analchem.9b04553] [Citation(s) in RCA: 62] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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