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Siddall ME, Barkdull M, Tessler M, Brugler MR, Borda E, Hekkala E. Ideating iDNA: Lessons and limitations from leeches in legacy collections. PLoS One 2019; 14:e0212226. [PMID: 30794582 PMCID: PMC6386349 DOI: 10.1371/journal.pone.0212226] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2018] [Accepted: 01/29/2019] [Indexed: 11/23/2022] Open
Abstract
Indirect methods for conducting faunal inventories present great promise, and genomic inventories derived from environmental sources (eDNA) are improving. Invertebrate ingested DNA (iDNA) from terrestrial leeches in the family Haemadipsidae has shown potential for surveying vertebrates and biodiversity monitoring in protected areas. Here we present an initial, and critical, evaluation of the limitations and biases of current iDNA protocols for biodiversity monitoring using both standard and NGS barcoding approaches. Key findings include the need for taxon relevant multi-locus markers and reference databases. In particular, the limitations of available reference databases have profound potential to mislead and bias eDNA and iDNA results if not critically interpreted. Nevertheless, there is great potential for recovery of amplifiable DNA from gut contents of invertebrate museum specimens which may reveal both temporal patterns and cryptic diversity in protected areas with increased efficiency. Our analyses of ingested DNA (iDNA) from both freshly stored and previously collected (legacy) samples of terrestrial leeches successfully identified vertebrates from Myanmar, Australia and Madagascar and indicate the potential to characterize microbial communities, pathogen diversity and interactions at low cost.
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Affiliation(s)
- Mark E. Siddall
- Division of Invertebrate Zoology, American Museum of Natural History, New York, New York, United States of America
- * E-mail:
| | - Megan Barkdull
- New College of Florida, Sarasota, Florida, United States of America
| | - Michael Tessler
- Division of Invertebrate Zoology, American Museum of Natural History, New York, New York, United States of America
| | - Mercer R. Brugler
- Division of Invertebrate Zoology, American Museum of Natural History, New York, New York, United States of America
- Biological Sciences Department, NYC College of Technology, City University of New York, Brooklyn, New York, United States of America
| | - Elizabeth Borda
- Department of Science and Math, Texas A&M University San Antonio, San Antonio, Texas, United States of America
| | - Evon Hekkala
- Department of Biological Sciences, Fordham University, Bronx, New York, United States of America
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Tessler M, Weiskopf SR, Berniker L, Hersch R, Mccarthy KP, Yu DW, Siddall ME. Bloodlines: mammals, leeches, and conservation in southern Asia. SYST BIODIVERS 2018. [DOI: 10.1080/14772000.2018.1433729] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Michael Tessler
- Richard Gilder Graduate School, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA
- Sackler Institute for Comparative Genomics, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA
- Division of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA
| | - Sarah R. Weiskopf
- Department of Entomology and Wildlife Ecology, University of Delaware, 531 South College Avenue, Newark, DE 19716, USA
| | - Lily Berniker
- Division of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA
| | - Rebecca Hersch
- Sackler Institute for Comparative Genomics, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA
| | - Kyle P. Mccarthy
- Department of Entomology and Wildlife Ecology, University of Delaware, 531 South College Avenue, Newark, DE 19716, USA
| | - Douglas W. Yu
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, 32 Jiaochang Dong Lu, Kunming, Yunnan 650223, China
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, Norfolk NR4 7TJ, UK
| | - Mark E. Siddall
- Richard Gilder Graduate School, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA
- Sackler Institute for Comparative Genomics, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA
- Division of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA
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Weeks JA, Guiney PD, Nikiforov AI. Assessment of the environmental fate and ecotoxicity of N,N-diethyl-m-toluamide (DEET). INTEGRATED ENVIRONMENTAL ASSESSMENT AND MANAGEMENT 2012; 8:120-134. [PMID: 22006575 DOI: 10.1002/ieam.1246] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
N,N-diethyl-m-toluamide (DEET) is a key active ingredient in many insect repellents available commercially throughout the world. Owing to its popularity among consumers for nearly 30 years, considerable work conducted in the past has demonstrated-and continues to demonstrate-that human exposure to DEET poses no significant health risk to the general population. The results of several studies reported in this paper describe more recent work to understand the environmental fate of DEET, particularly in surface waters and soil, and the potential hazards to aquatic and terrestrial organisms. In summary, DEET enters the environment through several pathways: directly into air during spray application; to surface water from overspray and indirectly via wastewater treatment plant (WTTP) discharges (as a result of washing of skin and laundering of clothing); or to soil via overspray and application of treated sewage as an amendment. Multimedia environmental fate modeling predicts that DEET entering the environment is retained either in receiving waters (∼79%) or in soil (∼21%). Based on its physicochemical properties, DEET is expected to be moderately mobile in the soil column. In surface waters and soil, DEET degrades at a moderate to rapid rate (its half-life is measured in days to weeks). The small amounts of DEET retained in air are subject to rapid photo-oxidation via hydroxyl radical-mediated degradation or, if in droplet form, gravitational settling to soil or water. DEET does not interfere with ozone formation in the upper atmosphere. The bioaccumulation potential of DEET is low; it is neither a persistent, bioaccumulative toxicant nor a persistent organic pollutant. Among aquatic species, acute effect concentrations range between 4 and 388 mg/L. The chronic no-observed effect concentrations (NOEC) for daphnids and green algae range from approximately 0.5 to 24 mg/L. Measured concentrations of DEET in surface waters are several hundreds to thousands of times lower than the lowest NOEC measured, and thus the probability for adverse effects to environmental species is low. A separate paper by Aronson et al. (this issue) supports this conclusion by quantitatively exploring the risks to the aquatic environment using a combination of monitoring data and exposure modeling.
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Affiliation(s)
- J A Weeks
- SC Johnson, 1525 Howe Street, Racine, Wisconsin 53403, USA.
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