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Fiacre L, Nougairède A, Migné C, Bayet M, Cochin M, Dumarest M, Helle T, Exbrayat A, Pagès N, Vitour D, Richardson JP, Failloux AB, Vazeille M, Albina E, Lecollinet S, Gonzalez G. Different viral genes modulate virulence in model mammal hosts and Culex pipiens vector competence in Mediterranean basin lineage 1 West Nile virus strains. Front Microbiol 2024; 14:1324069. [PMID: 38298539 PMCID: PMC10828019 DOI: 10.3389/fmicb.2023.1324069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Accepted: 12/28/2023] [Indexed: 02/02/2024] Open
Abstract
West Nile virus (WNV) is a single-stranded positive-sense RNA virus (+ssRNA) belonging to the genus Orthoflavivirus. Its enzootic cycle involves mosquito vectors, mainly Culex, and wild birds as reservoir hosts, while mammals, such as humans and equids, are incidental dead-end hosts. It was first discovered in 1934 in Uganda, and since 1999 has been responsible for frequent outbreaks in humans, horses and wild birds, mostly in America and in Europe. Virus spread, as well as outbreak severity, can be influenced by many ecological factors, such as reservoir host availability, biodiversity, movements and competence, mosquito abundance, distribution and vector competence, by environmental factors such as temperature, land use and precipitation, as well as by virus genetic factors influencing virulence or transmission. Former studies have investigated WNV factors of virulence, but few have compared viral genetic determinants of pathogenicity in different host species, and even fewer have considered the genetic drivers of virus invasiveness and excretion in Culex vector. In this study, we characterized WNV genetic factors implicated in the difference in virulence observed in two lineage 1 WNV strains from the Mediterranean Basin, the first isolated during a significant outbreak reported in Israel in 1998, and the second from a milder outbreak in Italy in 2008. We used an innovative and powerful reverse genetic tool, e.g., ISA (infectious subgenomic amplicons) to generate chimeras between Israel 1998 and Italy 2008 strains, focusing on non-structural (NS) proteins and the 3'UTR non-coding region. We analyzed the replication of these chimeras and their progenitors in mammals, in BALB/cByJ mice, and vector competence in Culex (Cx.) pipiens mosquitoes. Results obtained in BALB/cByJ mice suggest a role of the NS2B/NS3/NS4B/NS5 genomic region in viral attenuation in mammals, while NS4B/NS5/3'UTR regions are important in Cx. pipiens infection and possibly in vector competence.
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Affiliation(s)
- Lise Fiacre
- UMR VIRO, ANSES, ENVA, INRAE Virologie, Laboratoire de Santé Animale, Maisons-Alfort, France
- UMR ASTRE, CIRAD, Petit-Bourg, Guadeloupe
| | - Antoine Nougairède
- Unité Des Virus Emergents (UVE), Aix-Marseille Université, IRD 190, INSERM 1207, Marseille, France
| | - Camille Migné
- UMR VIRO, ANSES, ENVA, INRAE Virologie, Laboratoire de Santé Animale, Maisons-Alfort, France
| | | | - Maxime Cochin
- Unité Des Virus Emergents (UVE), Aix-Marseille Université, IRD 190, INSERM 1207, Marseille, France
| | - Marine Dumarest
- UMR VIRO, ANSES, ENVA, INRAE Virologie, Laboratoire de Santé Animale, Maisons-Alfort, France
| | - Teheipuaura Helle
- UMR VIRO, ANSES, ENVA, INRAE Virologie, Laboratoire de Santé Animale, Maisons-Alfort, France
| | - Antoni Exbrayat
- ASTRE, CIRAD, INRAe, Université de Montpellier, Montpellier, France
| | | | - Damien Vitour
- UMR VIRO, ANSES, ENVA, INRAE Virologie, Laboratoire de Santé Animale, Maisons-Alfort, France
| | - Jennifer P. Richardson
- UMR VIRO, ANSES, ENVA, INRAE Virologie, Laboratoire de Santé Animale, Maisons-Alfort, France
| | - Anna-Bella Failloux
- Institut Pasteur, Université Paris Cité, Arboviruses and Insects Vectors, Paris, France
| | - Marie Vazeille
- Institut Pasteur, Université Paris Cité, Arboviruses and Insects Vectors, Paris, France
| | - Emmanuel Albina
- ASTRE, CIRAD, INRAe, Université de Montpellier, Montpellier, France
| | | | - Gaëlle Gonzalez
- UMR VIRO, ANSES, ENVA, INRAE Virologie, Laboratoire de Santé Animale, Maisons-Alfort, France
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Lu L, Zhang F, Oude Munnink BB, Munger E, Sikkema RS, Pappa S, Tsioka K, Sinigaglia A, Dal Molin E, Shih BB, Günther A, Pohlmann A, Ziegler U, Beer M, Taylor RA, Bartumeus F, Woolhouse M, Aarestrup FM, Barzon L, Papa A, Lycett S, Koopmans MPG. West Nile virus spread in Europe: Phylogeographic pattern analysis and key drivers. PLoS Pathog 2024; 20:e1011880. [PMID: 38271294 PMCID: PMC10810478 DOI: 10.1371/journal.ppat.1011880] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Accepted: 12/04/2023] [Indexed: 01/27/2024] Open
Abstract
BACKGROUND West Nile virus (WNV) outbreaks in birds, humans, and livestock have occurred in multiple areas in Europe and have had a significant impact on animal and human health. The patterns of emergence and spread of WNV in Europe are very different from those in the US and understanding these are important for guiding preparedness activities. METHODS We mapped the evolution and spread history of WNV in Europe by incorporating viral genome sequences and epidemiological data into phylodynamic models. Spatially explicit phylogeographic models were developed to explore the possible contribution of different drivers to viral dispersal direction and velocity. A "skygrid-GLM" approach was used to identify how changes in environments would predict viral genetic diversity variations over time. FINDINGS Among the six lineages found in Europe, WNV-2a (a sub-lineage of WNV-2) has been predominant (accounting for 73% of all sequences obtained in Europe that have been shared in the public domain) and has spread to at least 14 countries. In the past two decades, WNV-2a has evolved into two major co-circulating clusters, both originating from Central Europe, but with distinct dynamic history and transmission patterns. WNV-2a spreads at a high dispersal velocity (88km/yr-215 km/yr) which is correlated to bird movements. Notably, amongst multiple drivers that could affect the spread of WNV, factors related to land use were found to strongly influence the spread of WNV. Specifically, the intensity of agricultural activities (defined by factors related to crops and livestock production, such as coverage of cropland, pasture, cultivated and managed vegetation, livestock density) were positively associated with both spread direction and velocity. In addition, WNV spread direction was associated with high coverage of wetlands and migratory bird flyways. CONCLUSION Our results suggest that-in addition to ecological conditions favouring bird- and mosquito- presence-agricultural land use may be a significant driver of WNV emergence and spread. Our study also identified significant gaps in data and the need to strengthen virological surveillance in countries of Central Europe from where WNV outbreaks are likely seeded. Enhanced monitoring for early detection of further dispersal could be targeted to areas with high agricultural activities and habitats of migratory birds.
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Affiliation(s)
- Lu Lu
- Roslin Institute, University of Edinburgh, Edinburgh, United Kingdom
- Usher Institute, University of Edinburgh, Edinburgh, United Kingdom
| | - Feifei Zhang
- Usher Institute, University of Edinburgh, Edinburgh, United Kingdom
| | - Bas B. Oude Munnink
- Erasmus MC, Viroscience and Pandemic and Disaster Preparedness Centre, Rotterdam, the Netherlands
| | - Emmanuelle Munger
- Erasmus MC, Viroscience and Pandemic and Disaster Preparedness Centre, Rotterdam, the Netherlands
| | - Reina S. Sikkema
- Erasmus MC, Viroscience and Pandemic and Disaster Preparedness Centre, Rotterdam, the Netherlands
| | - Styliani Pappa
- Department of Microbiology, Medical School, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Katerina Tsioka
- Department of Microbiology, Medical School, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | | | | | - Barbara B. Shih
- Roslin Institute, University of Edinburgh, Edinburgh, United Kingdom
| | - Anne Günther
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Riems, Germany
| | - Anne Pohlmann
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Riems, Germany
| | - Ute Ziegler
- Institute of Novel and Emerging Infectious Diseases, Friedrich-Loeffler-Institut, Greifswald-Riems, Germany
| | - Martin Beer
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Riems, Germany
| | - Rachel A. Taylor
- Department of Epidemiological Sciences, Animal and Plant Health Agency, United Kingdom
| | - Frederic Bartumeus
- Centre for Advanced Studies of Blanes (CEAB-CSIC), Girona, Spain
- Centre for Research on Ecology and Forestry Applications (CREAF), Barcelona, Spain
- Catalan Institution for Research and Advanced Studies (ICREA), Barcelona, Spain
| | - Mark Woolhouse
- Usher Institute, University of Edinburgh, Edinburgh, United Kingdom
| | - Frank M. Aarestrup
- Research Group for Genomic Epidemiology, Technical University of Denmark, Kongens Lyngby, Denmark
| | - Luisa Barzon
- Department of Molecular Medicine, University of Padova, Padua, Italy
| | - Anna Papa
- Department of Microbiology, Medical School, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Samantha Lycett
- Roslin Institute, University of Edinburgh, Edinburgh, United Kingdom
| | - Marion P. G. Koopmans
- Erasmus MC, Viroscience and Pandemic and Disaster Preparedness Centre, Rotterdam, the Netherlands
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Kouroupis D, Charisi K, Pyrpasopoulou A. The Ongoing Epidemic of West Nile Virus in Greece: The Contribution of Biological Vectors and Reservoirs and the Importance of Climate and Socioeconomic Factors Revisited. Trop Med Infect Dis 2023; 8:453. [PMID: 37755914 PMCID: PMC10536956 DOI: 10.3390/tropicalmed8090453] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 09/17/2023] [Accepted: 09/17/2023] [Indexed: 09/28/2023] Open
Abstract
Emerging infectious diseases have inflicted a significant health and socioeconomic burden upon the global population and governments worldwide. West Nile virus, a zoonotic, mosquito-borne flavivirus, was originally isolated in 1937 from a febrile patient in the West Nile Province of Uganda. It remained confined mainly to Africa, the Middle East, and parts of Europe and Australia until 1999, circulating in an enzootic mosquito-bird transmission cycle. Since the beginning of the 21st century, a new, neurotropic, more virulent strain was isolated from human outbreaks initially occurring in North America and later expanding to South and South-eastern Europe. Since 2010, when the first epidemic was recorded in Greece, annual incidence has fluctuated significantly. A variety of environmental, biological and socioeconomic factors have been globally addressed as potential regulators of the anticipated intensity of the annual incidence rate; circulation within the zoonotic reservoirs, recruitment and adaptation of new potent arthropod vectors, average winter and summer temperatures, precipitation during the early summer months, and socioeconomic factors, such as the emergence and progression of urbanization and the development of densely populated areas in association with insufficient health policy measures. This paper presents a review of the biological and socioenvironmental factors influencing the dynamics of the epidemics of West Nile virus (WNV) cases in Greece, one of the highest-ranked European countries in terms of annual incidence. To date, WNV remains an unpredictable opponent as is also the case with other emerging infectious diseases, forcing the National Health systems to develop response strategies, control the number of infections, and shorten the duration of the epidemics, thus minimizing the impact on human and material resources.
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Affiliation(s)
- Dimitrios Kouroupis
- 2nd Propedeutic Department of Internal Medicine, Hippokration Hospital, Konstantinoupoleos 49, 54642 Thessaloniki, Greece;
| | - Konstantina Charisi
- Infectious Diseases Unit, Hippokration Hospital, Konstantinoupoleos 49, 54642 Thessaloniki, Greece;
| | - Athina Pyrpasopoulou
- 2nd Propedeutic Department of Internal Medicine, Hippokration Hospital, Konstantinoupoleos 49, 54642 Thessaloniki, Greece;
- Infectious Diseases Unit, Hippokration Hospital, Konstantinoupoleos 49, 54642 Thessaloniki, Greece;
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Pervanidou D, Kefaloudi CN, Vakali A, Tsakalidou O, Karatheodorou M, Tsioka K, Evangelidou M, Mellou K, Pappa S, Stoikou K, Bakaloudi V, Koliopoulos G, Stamoulis K, Patsoula E, Politis C, Hadjichristodoulou C, Papa A. The 2022 West Nile Virus Season in Greece; A Quite Intense Season. Viruses 2023; 15:1481. [PMID: 37515168 PMCID: PMC10383024 DOI: 10.3390/v15071481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 06/23/2023] [Accepted: 06/26/2023] [Indexed: 07/30/2023] Open
Abstract
Since 2010, the West Nile virus (WNV) has been established in Greece. We describe the epidemiology of diagnosed human WNV infections in Greece with a focus on the 2022 season. During the transmission period, clinicians were sending samples from suspected cases for testing. Active laboratory-based surveillance was performed with immediate notification of diagnosed cases. We collected clinical information and interviewed patients on a timely basis to identify their place of exposure. Besides serological and molecular diagnostic methods, next-generation sequencing was also performed. In 2022, 286 cases of WNV infection were diagnosed, including 278 symptomatic cases and 184 (64%) cases with neuroinvasive disease (WNND); 33 patients died. This was the third most intense season concerning the number of WNND cases, following 2018 and 2010. Most (96%) cases were recorded in two regions, in northern and central Greece. The virus strain was a variant of previous years, clustering into the Central European subclade of WNV lineage 2. The 2022 WNV season was quite intense in Greece. The prompt diagnosis and investigation of cases are considered pivotal for the timely response, while the availability of whole genome sequences enables studies on the molecular epidemiology of the disease.
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Affiliation(s)
- Danai Pervanidou
- National Public Health Organization (EODY), 151 23 Athens, Greece
| | | | - Anna Vakali
- National Public Health Organization (EODY), 151 23 Athens, Greece
| | - Ourania Tsakalidou
- National Reference Center for Arboviruses and Haemorrhagic Fever Viruses, Department of Microbiology, Medical School, Faculty of Health Sciences, Aristotle University of Thessaloniki, 541 24 Thessaloniki, Greece
| | - Myrsini Karatheodorou
- National Reference Center for Arboviruses and Haemorrhagic Fever Viruses, Department of Microbiology, Medical School, Faculty of Health Sciences, Aristotle University of Thessaloniki, 541 24 Thessaloniki, Greece
| | - Katerina Tsioka
- National Reference Center for Arboviruses and Haemorrhagic Fever Viruses, Department of Microbiology, Medical School, Faculty of Health Sciences, Aristotle University of Thessaloniki, 541 24 Thessaloniki, Greece
| | | | - Kassiani Mellou
- National Public Health Organization (EODY), 151 23 Athens, Greece
| | - Styliani Pappa
- National Reference Center for Arboviruses and Haemorrhagic Fever Viruses, Department of Microbiology, Medical School, Faculty of Health Sciences, Aristotle University of Thessaloniki, 541 24 Thessaloniki, Greece
| | - Konstantina Stoikou
- National Reference Center for Arboviruses and Haemorrhagic Fever Viruses, Department of Microbiology, Medical School, Faculty of Health Sciences, Aristotle University of Thessaloniki, 541 24 Thessaloniki, Greece
| | - Vasiliki Bakaloudi
- Molecular Blood Center, AHEPA University General Hospital, 546 36 Thessaloniki, Greece
| | - George Koliopoulos
- Department of Crop Science, School of Plant Sciences, Agricultural University of Athens, 118 55 Athens, Greece
| | - Kostas Stamoulis
- Hellenic National Blood Transfusion Center, 136 72 Athens, Greece
| | - Eleni Patsoula
- Department of Public Health Policy, School of Public Health, University of West Attica, 115 21 Athens, Greece
| | | | - Christos Hadjichristodoulou
- Department of Hygiene and Epidemiology, School of Health Sciences, Faculty of Medicine, University of Thessaly, 412 22 Larisa, Greece
| | - Anna Papa
- National Reference Center for Arboviruses and Haemorrhagic Fever Viruses, Department of Microbiology, Medical School, Faculty of Health Sciences, Aristotle University of Thessaloniki, 541 24 Thessaloniki, Greece
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Tsioka K, Gewehr S, Pappa S, Kalaitzopoulou S, Stoikou K, Mourelatos S, Papa A. West Nile Virus in Culex Mosquitoes in Central Macedonia, Greece, 2022. Viruses 2023; 15:224. [PMID: 36680264 PMCID: PMC9863787 DOI: 10.3390/v15010224] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 01/04/2023] [Accepted: 01/11/2023] [Indexed: 01/15/2023] Open
Abstract
In 2022, Greece was the second most seriously affected European country in terms of the West Nile virus (WNV), after Italy. Specifically, Central Macedonia was the region with the most reported human cases (81.5%). In the present study, 30,816 female Culex pipiens sensu lato mosquitoes were collected from May to September 2022 in the seven regional units of Central Macedonia; they were then grouped into 690 pools and tested for WNV, while next-generation sequencing was applied to the samples, which showed a cycle threshold of Ct < 30 in a real-time RT-PCR test. WNV was detected in 5.9% of pools, with significant differences in the detection rate among regional units and months. It is of interest that in the Thessaloniki regional unit, where most of the human cases were observed, the virus circulation started earlier, peaked earlier, and lasted longer than in the other regional units. All sequences clustered into the Central European subclade of WNV lineage 2, and the virus strain differed from the initial Greek strain of 2010 by 0.52% and 0.27% at the nucleotide and amino acid levels, respectively. Signature substitutions were present, such as S73P and T157A in the prM and E structural proteins, respectively. The screening of mosquitoes provides useful information for virus circulation in a region with a potential for early warning, while the availability of whole-genome sequences is essential for further studies, including virus evolution.
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Affiliation(s)
- Katerina Tsioka
- Laboratory of Microbiology, National Reference Centre for Arboviruses, School of Medicine, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | | | - Styliani Pappa
- Laboratory of Microbiology, National Reference Centre for Arboviruses, School of Medicine, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | | | - Konstantina Stoikou
- Laboratory of Microbiology, National Reference Centre for Arboviruses, School of Medicine, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | | | - Anna Papa
- Laboratory of Microbiology, National Reference Centre for Arboviruses, School of Medicine, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
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