1
|
Miller ML, Rota C, Welsh A. Transforming gastrointestinal helminth parasite identification in vertebrate hosts with metabarcoding: a systematic review. Parasit Vectors 2024; 17:311. [PMID: 39030625 PMCID: PMC11265005 DOI: 10.1186/s13071-024-06388-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2024] [Accepted: 07/03/2024] [Indexed: 07/21/2024] Open
Abstract
BACKGROUND Gastrointestinal helminths are a very widespread group of intestinal parasites that can cause major health issues in their hosts, including severe illness or death. Traditional methods of helminth parasite identification using microscopy are time-consuming and poor in terms of taxonomic resolution, and require skilled observers. DNA metabarcoding has emerged as a powerful alternative for assessing community composition in a variety of sample types over the last few decades. While metabarcoding approaches have been reviewed for use in other research areas, the use of metabarcoding for parasites has only recently become widespread. As such, there is a need to synthesize parasite metabarcoding methodology and highlight the considerations to be taken into account when developing a protocol. METHODS We reviewed published literature that utilized DNA metabarcoding to identify gastrointestinal helminth parasites in vertebrate hosts. We extracted information from 62 peer-reviewed papers published between 2014 and 2023 and created a stepwise guide to the metabarcoding process. RESULTS We found that studies in our review varied in technique and methodology, such as the sample type utilized, genetic marker regions targeted and bioinformatic databases used. The main limitations of metabarcoding are that parasite abundance data may not be reliably attained from sequence read numbers, metabarcoding data may not be representative of the species present in the host and the cost and bioinformatic expertise required to utilize this method may be prohibitive to some groups. CONCLUSIONS Overall, using metabarcoding to assess gastrointestinal parasite communities is preferable to traditional methods, yielding higher taxonomic resolution, higher throughput and increased versatility due to its utility in any geographical location, with a variety of sample types, and with virtually any vertebrate host species. Additionally, metabarcoding has the potential for exciting new discoveries regarding host and parasite evolution.
Collapse
Affiliation(s)
- Madison L Miller
- Division of Forestry and Natural Resources, West Virginia University, Morgantown, WV, USA.
| | - Christopher Rota
- Division of Forestry and Natural Resources, West Virginia University, Morgantown, WV, USA
| | - Amy Welsh
- Division of Forestry and Natural Resources, West Virginia University, Morgantown, WV, USA
| |
Collapse
|
2
|
Experimental evidence of parasite-induced behavioural alterations modulated by food availability in wild capuchin monkeys. Sci Rep 2023; 13:3083. [PMID: 36813841 PMCID: PMC9947137 DOI: 10.1038/s41598-023-30262-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Accepted: 02/20/2023] [Indexed: 02/24/2023] Open
Abstract
In disease dynamics, host behaviour can both determine the quantity of parasites a host is exposed to, and be a consequence of infection. Observational and experimental studies in non-human primates have consistently found that parasitic infections result in less movement and reduced foraging, which was interpreted as an adaptive response of the host to counter infection. Variation in host nutritional condition may add complexity to the infection-behaviour relationship, and its influence may shed light on its significance. To experimentally evaluate how host activity and social relationships are affected by the interaction of parasitism and nutrition, during two years we manipulated food availability by provisioning bananas, and helminth infections by applying antiparasitic drugs, in two groups of wild black capuchin monkeys (Sapajus nigritus) in Iguazú National Park, Argentina. We collected faecal samples to determine the intensity of helminthic infections, as well as data on behaviour and social proximity. Individuals with unmanipulated helminth burdens foraged less than dewormed individuals only when food provisioning was low. Resting time was increased when capuchins were highly provisioned, but it did not vary according to the antiparasitic treatment. Proximity associations to other group members were not affected by the antiparasitic treatment. This is the first experimental evidence of a modulating effect of food availability on the influence of helminth infection on activity in wild primates. The findings are more consistent with an impact on host behaviour due to the debilitating effect caused by parasites than with an adaptive response to help fight infections.
Collapse
|
3
|
Ikurior SJ, Pomroy WE, Scott I, Corner-Thomas R, Marquetoux N, Leu ST. Gastrointestinal nematode infection affects overall activity in young sheep monitored with tri-axial accelerometers. Vet Parasitol 2020; 283:109188. [PMID: 32693323 DOI: 10.1016/j.vetpar.2020.109188] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2019] [Revised: 07/15/2020] [Accepted: 07/16/2020] [Indexed: 01/31/2023]
Abstract
Animals suffering from parasitism typically display altered grazing behaviour and a voluntary reduction in feed intake. These changes are potentially important as indicators of disease. Recent advances in sensor technologies provide the opportunity to objectively measure animal activity while on pasture. Tri-axial accelerometers measure body movement in terms of acceleration, which can then be used to estimate physical activity over time. This study investigated if tri-axial measures of overall activity can be used to assess the impact of gastrointestinal nematode (GIN) infection in young sheep. To address this, the overall activity, faecal nematode egg count (FEC) and body weight of two treatment groups of Romney X Suffolk ram lambs were compared. Animals were monitored for four days using tri-axial accelerometer sensors mounted on a ram mating harness after 42-days grazing on contaminated pasture. On Day 0, all lambs were given anthelmintics. Subsequently, a Suppressive Treatment Group (n = 12) was treated with anthelmintics every two weeks. An Untreated Group (n = 12) did not receive further anthelmintics. Overall activity levels were monitored from Day 42 - 46. Activity level was calculated as vectorial dynamic body acceleration (VeDBA). Anthelmintic treatment had a significant effect on FEC but there was no evidence found for a treatment effect on body weight growth over the 42-day period. An effect of treatment and lamb starting weight on overall activity was found (beta = -0.74, 95 % CI -1.17 to -0.30, p = 0.002), identifying a negative impact of parasitism on activity in heavier animals. These results highlight the usefulness of this approach in assessing the effect of GIN parasitism on sheep monitored remotely. If a threshold value of activity could be determined, it could provide a useful tool for farmers and managers that serves as an early indicator of parasitism in sheep.
Collapse
Affiliation(s)
- Seer J Ikurior
- School of Veterinary Science, Massey University, Tennent Drive, Palmerston North, 4442, New Zealand.
| | - William E Pomroy
- School of Veterinary Science, Massey University, Tennent Drive, Palmerston North, 4442, New Zealand
| | - Ian Scott
- School of Veterinary Science, Massey University, Tennent Drive, Palmerston North, 4442, New Zealand
| | - Rene Corner-Thomas
- School of Veterinary Science, Massey University, Tennent Drive, Palmerston North, 4442, New Zealand; School of Agriculture and Environment, Massey University, Palmerston North, New Zealand
| | - Nelly Marquetoux
- EpiCentre, School of Veterinary Science, Massey University, Palmerston North, New Zealand
| | - Stephan T Leu
- Department of Biological Sciences, Macquarie University, NSW, Australia
| |
Collapse
|
4
|
Ezenwa VO, Worsley-Tonks KEL. Social living simultaneously increases infection risk and decreases the cost of infection. Proc Biol Sci 2018; 285:rspb.2018.2142. [PMID: 30487314 DOI: 10.1098/rspb.2018.2142] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2018] [Accepted: 11/05/2018] [Indexed: 01/05/2023] Open
Abstract
Elevated parasite infection risk is considered to be a near-universal cost of social living. However, living in groups may also provide benefits that reduce the negative impacts of infection. These potential 'tolerance' benefits of living socially are theoretically possible, but have rarely been described. In this study, we used an anthelmintic treatment experiment in wild Grant's gazelles (Nanger granti), who are commonly infected with gastrointestinal nematodes (GIN), to show that social living confers both costs and benefits related to GIN parasitism. We show that although larger group size increases GIN infection risk, a key cost of GIN infection-the suppression of food intake-is simultaneously moderated by living in larger groups. Our findings help illuminate the complex role parasites play in the evolution of host social behaviour.
Collapse
Affiliation(s)
- Vanessa O Ezenwa
- Odum School of Ecology, College of Veterinary Medicine, University of Georgia, Athens, GA, USA .,Department of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, GA, USA
| | - Katherine E L Worsley-Tonks
- Odum School of Ecology, College of Veterinary Medicine, University of Georgia, Athens, GA, USA.,Department of Veterinary Population Medicine, University of Minnesota, St Paul, MN, USA
| |
Collapse
|
5
|
Coulson G, Cripps JK, Garnick S, Bristow V, Beveridge I. Parasite insight: assessing fitness costs, infection risks and foraging benefits relating to gastrointestinal nematodes in wild mammalian herbivores. Philos Trans R Soc Lond B Biol Sci 2018; 373:20170197. [PMID: 29866912 PMCID: PMC6000135 DOI: 10.1098/rstb.2017.0197] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/07/2018] [Indexed: 11/12/2022] Open
Abstract
Mammalian herbivores are typically infected by parasitic nematodes, which are acquired through direct, faecal-oral transmission. These parasites can cause significant production losses in domestic livestock, but much less is known about impacts on wild mammalian hosts. We review three elements of parasitism from the host's perspective: fitness costs of infection, risks of infection during foraging and benefits of nutritious pasture. The majority of wildlife studies have been observational, but experimental manipulation is increasing. Treatment with anthelmintics to manipulate parasite load has revealed varied impacts of parasites on fitness variables across host species, but has not produced consistent evidence for parasite-induced anorexia or impaired body condition. Some experimental studies of infection risk have manipulated faecal contamination and detected faecal avoidance by hosts. Only two field studies have explored the trade-off between infection risk and nutritional benefit generated by avoidance of contaminated patches. Overall, field studies of costs, risks and benefits of the host-parasite relationship are limited and few have examined more than one of these elements. Parasitism has much in common with predation, and future insights into anti-parasite responses by wild hosts could be gained from the conceptual and technical developments in research on anti-predator behaviour.This article is part of the Theo Murphy meeting issue 'Evolution of pathogen and parasite avoidance behaviours'.
Collapse
Affiliation(s)
- Graeme Coulson
- School of BioSciences, The University of Melbourne, Melbourne, Victoria 3010, Australia
| | - Jemma K Cripps
- School of BioSciences, The University of Melbourne, Melbourne, Victoria 3010, Australia
- Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Veterinary Clinical Centre, Werribee, Victoria 3030, Australia
- Department of Environment, Land, Water and Planning, Arthur Rylah Institute for Environmental Research, 123 Brown Street, Heidelberg, Victoria 3084, Australia
| | - Sarah Garnick
- School of BioSciences, The University of Melbourne, Melbourne, Victoria 3010, Australia
- Department of Wildlife and Fisheries Sciences, Texas A&M University, College Station, TX 77843, USA
| | - Verity Bristow
- School of BioSciences, The University of Melbourne, Melbourne, Victoria 3010, Australia
- Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Veterinary Clinical Centre, Werribee, Victoria 3030, Australia
| | - Ian Beveridge
- Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Veterinary Clinical Centre, Werribee, Victoria 3030, Australia
| |
Collapse
|
6
|
Friant S, Ziegler TE, Goldberg TL. Changes in physiological stress and behaviour in semi-free-ranging red-capped mangabeys (Cercocebus torquatus) following antiparasitic treatment. Proc Biol Sci 2017; 283:rspb.2016.1201. [PMID: 27466454 DOI: 10.1098/rspb.2016.1201] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Accepted: 07/06/2016] [Indexed: 12/30/2022] Open
Abstract
Parasites are ubiquitous in wildlife populations, but physiological and behavioural responses of hosts to infection are difficult to measure. We experimentally treated semi-free-ranging red-capped mangabeys (Cercocebus torquatus) in Nigeria with antiparasitic drugs and examined subsequent changes in glucocorticoid production and individual behaviour. Because both parasites and stress impact energy balance and health, we measured (i) behavioural time re-allocation via activity budgets, (ii) social relationships (e.g. social connectivity and dominance hierarchy stability) and (iii) body condition. We collected triplicate faecal samples (n = 441) from 49 individuals prior to and following treatment. Cortisol levels fluctuated in parallel with parasite abundance. Elevations in cortisol, but not parasitism, were related to reduced body condition. Behaviour also shifted according to infection status, with uninfected individuals spending more time foraging and less time resting and vigilant compared with when they were infected. Time spent feeding, travelling or socializing did not differ between pre- and post-treatment time periods. Group cohesion, but not dominance stability, changed following treatment, suggesting parasite-induced social avoidance. Together, these findings show a coordinated response to infection that promotes host tolerance through stress and energy conservation, reduces transmission risk and increases protection when infected hosts are vulnerable.
Collapse
Affiliation(s)
- Sagan Friant
- Nelson Institute for Environmental Studies, University of Wisconsin--Madison, Madison, WI 53706, USA Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin--Madison, Madison, WI 53706, USA
| | - Toni E Ziegler
- Wisconsin National Primate Research Centre, University of Wisconsin--Madison, Madison, WI 53706, USA
| | - Tony L Goldberg
- Nelson Institute for Environmental Studies, University of Wisconsin--Madison, Madison, WI 53706, USA
| |
Collapse
|
7
|
Finnerty PB, Shine R, Brown GP. The costs of parasite infection: Effects of removing lungworms on performance, growth and survival of free‐ranging cane toads. Funct Ecol 2017. [DOI: 10.1111/1365-2435.12992] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Patrick B. Finnerty
- School of Life and Environmental Sciences University of Sydney Sydney NSW Australia
| | - Richard Shine
- School of Life and Environmental Sciences University of Sydney Sydney NSW Australia
| | - Gregory P. Brown
- School of Life and Environmental Sciences University of Sydney Sydney NSW Australia
| |
Collapse
|
8
|
Finnerty PB, Shilton CM, Shine R, Brown GP. Using experimental de-worming to measure the immunological and pathological impacts of lungworm infection in cane toads. INTERNATIONAL JOURNAL FOR PARASITOLOGY-PARASITES AND WILDLIFE 2017; 6:310-319. [PMID: 28971017 PMCID: PMC5614598 DOI: 10.1016/j.ijppaw.2017.09.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/22/2017] [Revised: 09/12/2017] [Accepted: 09/16/2017] [Indexed: 10/26/2022]
Abstract
The immunological and pathological consequences of parasite infection can be more rigorously assessed from experimental manipulation than from correlational studies of natural infections. We used anthelmintic treatment to experimentally decrease intensities of lungworm infection in captive and free-ranging wild cane toads to assess parasite impacts on host immune responses. First, we administered the anthelmintic drug Ivermectin to both infected and uninfected toads, to distinguish drug effects per se from the impacts of killing lungworms. Worms began dying and decomposing <48 h after injection. The only immunological variables that were affected by anthelmintic treatment were bactericidal capacity of the blood which increased in parasitized toads (presumably triggered by decomposing worms in the lungs), and the phagocytic capacity of blood (which increased in both infected and uninfected toads); the latter effect presumably was caused by the injection of Ivermectin per se rather than removal of parasites. Second, we looked at correlates of variation in the infection intensity induced by de-worming (in both captive and free-ranging toads) over an eight-week period. Heavier lungworm infection was associated with increased phagocytic ability of the host's blood, and a reduction in the host's liver mass (and hence, energy stores). Experimental de-worming thus revealed pathological and immunological costs of the presence of lungworms, and of their removal by anthelmintic injection.
Collapse
Affiliation(s)
- Patrick B Finnerty
- School of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales 2006, Australia
| | - Catherine M Shilton
- Berrimah Veterinary Laboratories, Northern Territory Government, Berrimah, Northern Territory, 0828, Australia
| | - Richard Shine
- School of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales 2006, Australia
| | - Gregory P Brown
- School of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales 2006, Australia
| |
Collapse
|
9
|
Budischak SA, O'Neal D, Jolles AE, Ezenwa VO. Differential host responses to parasitism shape divergent fitness costs of infection. Funct Ecol 2017. [DOI: 10.1111/1365-2435.12951] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Sarah A. Budischak
- Odum School of EcologyUniversity of Georgia Athens GA USA
- Department of Ecology and Evolutionary Biology Princeton NJ USA
| | - Dawn O'Neal
- Odum School of EcologyUniversity of Georgia Athens GA USA
- Huyck Preserve & Biological Research Station Rensselaerville NY USA
| | - Anna E. Jolles
- Department of Biomedical Sciences and Department of Integrative BiologyOregon State University Corvallis OR USA
| | - Vanessa O. Ezenwa
- Odum School of EcologyUniversity of Georgia Athens GA USA
- Department of Infectious DiseasesUniversity of Georgia Athens GA USA
| |
Collapse
|
10
|
Cripps JK, Martin JK, Coulson G. Anthelmintic Treatment Does Not Change Foraging Strategies of Female Eastern Grey Kangaroos, Macropus giganteus. PLoS One 2016; 11:e0147384. [PMID: 26784582 PMCID: PMC4718527 DOI: 10.1371/journal.pone.0147384] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2015] [Accepted: 01/04/2016] [Indexed: 11/18/2022] Open
Abstract
Large mammalian herbivores are commonly infected with gastrointestinal helminths. Heavily parasitised hosts are likely to have increased nutritional requirements and would be predicted to increase their food intake to compensate for costs of being parasitised, but experimental tests of the impacts of these parasites on the foraging efficiency of hosts are lacking, particularly in free-ranging wildlife. We conducted a field experiment on a population of free-ranging eastern grey kangaroos (Macropus giganteus) to test this prediction, removing nematodes from one group of adult females using an anthelmintic treatment. We then carried out observations before and following treatment to assess the influence of parasites on foraging behaviour. Contrary to our predictions, the manipulation of parasite burdens did not result in changes in any of the key foraging variables we measured. Our results suggest that despite carrying large burdens of gastrointestinal parasites, the foraging strategy of female kangaroos is likely be driven by factors unrelated to parasitism, and that kangaroos in high nutritional environments may be able acquire sufficient nutrients to offset the costs of parasitism. We conclude that the drivers of forage intake likely differ between domesticated and free-ranging herbivores, and that free-ranging hosts are likely more resilient to parasitism.
Collapse
Affiliation(s)
- Jemma K. Cripps
- School of BioSciences, The University of Melbourne, Melbourne, Victoria, Australia
- Faculty of Veterinary Science, The University of Melbourne, Veterinary Clinical Centre, Werribee, Victoria, Australia
- * E-mail:
| | - Jennifer K. Martin
- School of BioSciences, The University of Melbourne, Melbourne, Victoria, Australia
| | - Graeme Coulson
- School of BioSciences, The University of Melbourne, Melbourne, Victoria, Australia
| |
Collapse
|