Assessment of n-alkanes, long-chain fatty alcohols and long-chain fatty acids as diet composition markers: The concentrations of these compounds in rangeland species from Sudan

n-Alkanes and n-Alkenes in Virgin Olive Oil from Calabria (South Italy): The Effects of Cultivar and Harvest Date

n-Alkanes and n-alkenes are components of the unsaponifiable fraction of an olive oil. These were analysed by GC on-column analysis and are here proposed as an additional tool to certify the origin, authenticity, traceability and chemical quality of olive oil produced in the Reggio Calabria province (South Italy). Nine cultivars were studied: Cassanese, Coratina, Itrana, Leccino, Nociara, Ottobratica, Pendolino, Picholine and Sinopolese grown in the region of Calabria (South Italy). n-Alkanes in the range from 21 to 35 chain carbon atoms and alkenes in the range from 23:1 to 25:1 chain carbon atoms were found with the following elution order: heneicosane (C21), docosane (C22), tricosene (C23:1), tricosane (C23), tetracosene (C24:1), tetracosane (C24), pentacosene (C25:1), pentacosane (C25), hexacosane (C26), eptacosane (C27), octacosane (C28), nonacosane (C29), triacontane (C30), entriacontane (C31), dotriacontane (C32), tritriacontane (C33), tetratriacontane (C34), pentatriacontane (C35). The oil of all cultivars showed a decreasing trend in total n-alkane and n-alkene content, with the oil of Sinopolese showing the highest content, varying from 328.50 to 214.00 mg/kg. Odd-chain alkanes predominated over even-chain n-alkanes, and tricosane, tetracosane and pentacosane were the most represented alkanes. Cultivar and harvest date significantly influenced the n-alkane and n-alkene content. These findings can be useful to distinguish different olive cultivars and to decide the fruit harvest date for the oil of the Reggio Calabria province (South Italy). A daily quantity of 30 g of olive oil of the Sinoplese cv (the one with the highest n-alkane and n-alkene content) was found to be in accordance with the suggestions of the European Agency for the evaluation of medicinal products Committee for veterinary medicinal products and biogenic hydrocarbons intake for the human diet.

Herbivore-Diet Analysis Based on Illumina MiSeq Sequencing: The Potential Use of an ITS2-Barcoding Approach to Establish Qualitative and Quantitative Predictions of Diet Composition of Mongolian Sheep

DNA-barcoding approaches to estimate the diet compositions of grazing animals have received significant attention, and particularly when combined with next-generation sequencing, these techniques have substantially improved in recent years. In this study, the identity and species composition of plant material ingested by Mongolian sheep were estimated through the use of 350 bp ITS2 gene sequences of the vegetation found in fecal samples. Four diets were formulated using varying amounts of eight plant species that are common in the grasslands of northern China. Sixteen Mongolian sheep were taken from pastures and randomly assigned to four groups, and each group received one of four diets. Each sheep was randomly assigned to one of 16 confinement pens and fed its respective diet for 12 consecutive days. Fecal samples were removed from each pen from days 7-12, preserved, and composited for each pen. All herbage species included in the daily diets were detected in each fecal sample, with the exception of Phragmites australis. Moreover, 12 additional different plant species were retrieved from feces of the experimental sheep. The obtained data provided preliminary support for the use of the ITS2 barcode to determine which plants were consumed. Moreover, the proportions of the herbage DNA sequences recovered from sheep feces and those of the herbage masses in the daily diets did not completely match. These results indicate that the non-Gramineae DNA sequences amplified with ITS2 primers (including those of Chenopodium album, Artemisia scoparia, Artemisia tanacetifolia, and Medicago sativa) far exceeded those of the Gramineae species (including Leymus chinensis and Puccinellia distans), which constitute the largest share of the experimental diets. A significant positive correlation (Spearman's ρ = 0.376, P = 0.003) between the actual herbage mass proportions in the experimental diets and the herbage-DNA-sequence proportions provided sufficiently favorable support for the further investigation of DNA barcoding for the quantification of plants in feces. A significant regression coefficient was found between the relative DNA-sequence proportions of L. chinensis ( R² = 0.82, P < 0.0001), P. distans ( R² = 0.64, P = 0.0017), and C. album ( R² = 0.98, P < 0.0001) and their respective herbage mass proportions. The quantitative relationship can be expressed by the linear-regression equations y = 0.90 x - 0.22, y = 0.98 x - 0.03, and y = 5.00 x - 0.25, respectively. Thus, these results demonstrate that dietary-DNA-barcoding methods exhibited potential in providing valuable quantitative information regarding food-item components. However, it should be noted that this explorative data needs to be further improved by using additional genes and by creating a sophisticated reference database, thus enhancing both quality and accuracy of the obtained results.

n-Alkane and long-chain alcohol recovery in moose (Alces alces), a browsing herbivore

Habitat management for herbivores often depends on an understanding of the food habits of animals. Plant cuticular waxes containing nearly indigestible complex mixture of n-alkanes and long-chain alcohols (LCOHs) have recently shown promise for diet analyses, but the accuracy of the technique depends strongly on the efficiency of recovery of the markers in feces. Fecal recovery of n-alkanes and LCOHs from 10 browse stems or leaves and two ensiled grass hays fed to moose (Alces alces (Linnaeus, 1758)) during in vivo digestion trials was investigated. n-Alkanes and LCOHs were extracted using a single-step accelerated solvent extraction technique and the recovery of these cuticular components was calculated from the feces of the animals. n-Alkane recoveries from feces averaged 0.82, ranging from a low of 0.58 (haylage) to a high of 0.95 (browse stems). LCOH recoveries averaged 0.92 across all forages, ranging from 0.80 (haylage) to a high of 1.13 (browse stems). n-Alkane and LCOH fecal recovery increased with increasing chain length, similar to findings in other studies. Although fecal recovery of n-alkanes and LCOHs were variable, we conclude that they are inversely related to forage digestibility, are consistent within forage classes, and are therefore predictable markers for use in assessing herbivore diets.

The use of n–alkanes and other plant–wax compounds as markers for studying the feeding and nutrition of large mammalian herbivores

In the study of the feeding behaviour and nutrition of free-ranging mammalian herbivores, determining what the animals are eating, its quality and quantity can be difficult to accomplish. The measurement processes themselves may disturb the animals’ normal foraging behaviours which can be a major problem in rangeland, forest and other semi-natural environments. Furthermore, animals are likely to select mixtures of plants and their components which differ from the available vegetation. Quantitative measures of diet composition, digestibility, faecal output and intake in individual grazing or browsing animals have depended on the use of faecal markers. These are materials measurable in faeces that originate from the diet (internal markers), or are absent from the diet, but administered by oral dosing (external markers). The ‘ideal’ faecal marker needs complete recovery in faeces, simple and accurate quantitative measurement, inertness in having no effect on the animal or its diet, and similar physical characteristics (in terms of particle size and density) to the digestive tract contents. No individual material or chemical entity has been found which fulfils all of the ‘ideal’ marker attributes. For example, lignin, indigestible acid-detergent fibre (IADF) and ‘chromogen’, have been used as internal markers, but since they are not discrete compounds, analytical methods are empirical., resulting in inconsistent faecal recoveries.

Virtually all higher plants have an outer surface layer of wax, which is usually a complex mixture of aliphatic lipid compounds whose composition differs between plant types, and different parts of the same plant. Plant waxes can be analysed as discrete compounds, are relatively inert, and because the patterns of individual compounds tend to differ between plant species, they offer the potential of enabling measurement of the contributions of specific plant species to the diet. Leaves and floral parts tend to have the highest concentrations; roots have very low levels. The main classes of plant waxes are straight and branched chain alkanes, alkenes, long–chain fatty acids and esters, long–chain fatty alcohols; long–chain fatty aldehydes and ketones and b–diketones. Analysis is usually carried out by a stepwise process of solvent extraction, purification and gas chromatography (GC). Straight–chain alkanes (n–alkanes) have been the most commonly used marker to date, being present as mixtures with chain lengths ranging from 21 to 37 carbon atoms. Over 90% of n–alkanes have odd–numbered carbon chains, with C29, C31and C33alkanes being dominant in most pasture species. Recovery in faeces of plant waxes is high but not complete, and is related to chain length, the longer the chain, the higher the recovery. Correction factors have been measured in a number of herbivore species.

The first application of plant-wax n-alkanes as faecal markers was to determine herbage digestibility in ruminants. Subsequently it was realised that dosed synthetic alkanes could be used to determine faecal output, and hence dosed and herbage alkanes could be concurrently used to estimate intake. This offered substantial advantages over other methods. Furthermore, differences between plant species and parts in their patterns of individual alkanes can be exploited to enable quantitative determination of diet composition from the patterns found in faeces. Since differences in the relative faecal recoveries of individual markers could modify the faecal marker pattern, recovery corrections may be necessary. This approach was first used for measuring the composition of simple dietary mixtures and the intake of dietary supplements to be determined. The use of long-chain fatty alcohols and fatty acids as additional markers offers the potential for more complex diets to be evaluated. The fact that plant-wax alkanes remain attached to particulate dietary residues throughout the ruminant gut, means that they are also good markers for determining the rate of passage of material along the digestive tract

Estimates of digestibility and faecal output obtained from respective natural and dosed n-alkanes will be biased, unless corrections are made to account for incomplete faecal recoveries. However, intake estimates will be unbiased if the faecal recoveries of the two markers are the same. Studies in sheep, cattle and goats have shown plant C33and dosed C32alkanes to have very similar faecal recoveries and thus give unbiased estimates of herbage intake. The alkane method for estimating intake offers advantages over other techniques. It gives individual-animal intakes and can be used where animals are receiving feed supplements. Also, GC analysis allows both plant and dosed markers to be determined at the same time, which limits analytical time, error and bias. Since the ratio of the concentrations in faeces is used, it is not necessary to obtain absolute faecal concentrations.

Alkenes and branched-chain alkanes have been investigated as additional markers for diet composition estimation since they can be quantified in the same GC analysis asn-alkanes. Although alkenes, which tend to be associated with floral plant parts, have low recoveries (25-40%), they can be useful diet composition markers since their recoveries are little affected by chain length. Faecal recoveries of the branched-chain alkanes, fromAgrostis capillarisherbage, were slightly lower (60-65%) than the respectiven-alkanes (C30and C32) of equivalent carbon number (85-90%). These alkanes are rare in forage species, and their practical usefulness as markers for quantitative composition estimation has yet to be tested.

Long-chain fatty alcohols have been shown to be effective diet composition markers. In most plants fatty alcohol concentrations are higher than those of hydrocarbons, and there can be profound differences in composition between species. They may be of particular value for diets containing plants with low alkane concentrations. Faecal recoveries in sheep, liken-alkanes, increase progressively with chain length from about 60% to 90%. It has been shown experimentally that the use of alcohols, together withn-alkanes, is likely to give a better estimate of diet composition in a given situation than n-alkanes alone.

The very long-chain fatty acids of plant cuticular wax (C20-C34), originally suggested as digestibility markers, may also have potential as diet composition markers. Liken-alkanes and long-chain fatty alcohols, the faecal recoveries of plant-wax fatty acids in sheep increase with carbon chain length. Comparisons withn-alkanes and fatty alcohols suggested that the fatty acids were inferior as diet composition markers. This may have been due to the fact that the fatty acid extracts analysed by GC were relatively impure, containing a number of unidentified compounds. The reliability of plant-wax fatty acids as markers may be improved with more effective analytical procedures.

There are a number of ways of calculating the diet composition from marker patterns in the faeces and potential dietary components. A simple approach is to determine a solution from a matrix of simultaneous equations; the number of dietary components must equal the number of markers used. Because, for simple dietary mixtures, there may be more available markers than dietary components, difficulties may arise in making the best choice of marker. Least-squares optimisation methods allow the number of markers to exceed the number of diet components, and thus (in theory) make better use of available information.

Since the concept of using faecal marker patterns for making quantitative diet composition estimates is relatively new, the associated mathematical and statistical procedures used to date have been rather crude and simplistic. There is potential to make more effective use of the marker data by using more sophisticated computational approaches. These include a range of multivariate techniques, including: a) Principal component and discriminant analysis; b) The weighting of the contribution of different markers, since with the leastsquares optimisation procedure, markers with the highest overall concentrations contribute most to the composition estimate, even though some markers with low concentrations may have large relative differences between dietary components. It would logical to weight markers in favour of those having the greatest relative variation across dietary components, and those providing the least compositional information could be weighted against; c) Statistical procedures are needed to evaluate the quality of diet composition estimates. The minimisation procedures described earlier take no account of any within-component variation in marker composition, and the effect of such variation on the quality of resultant diet composition estimate is not known. Attempts are being made to develop statistical procedures which will provide details of confidence intervals of compositional estimates resulting from particular plant species mixtures of known within- and between-species variability in marker composition.

For reliable estimation of digestibility, intake and diet composition, the feed sample must be representative, with respect to its plant wax marker concentration, of the material ingested by the animals under investigation, not necessarily all of the material present. Since marker concentrations can differ for different plant parts and plant species, care must be taken in sampling the vegetation for analysis. Although oesophageal-fistulated animals have been used to collect samples of ingested vegetation, hand-plucked grass samples have been found to be adequate for uniform grass swards,. In heterogeneous vegetation environments, especially when browse species are present, herbivores are likely to be highly selective. It is thus wise to make preliminary observations of animals’ ingestive behaviours, so appropriate parts of the dietary plants are sampled.

The use of plant waxes, initially with alkanes, as markers in the study of the diets of domestic ruminants is finding increasing use in other herbivores, both domesticated and wild (moose, fallow deer, mountain hares, pigs, rabbits, horses, donkeys, giraffes). Such methodologies have been applied in non-mammalian herbivores, including birds (pigeons, and ostriches) and reptiles (tortoises). Synthetic alkanes have been used as markers to estimate digestibility and intake in fish. Although tests have not yet been carried out, plant wax marker methods may even be applicable to non-vertebrate herbivores, such as caterpillars, slugs and snails. Expansion of the technique to include plant wax compounds other than alkanes will broaden the spectrum of animals and systems which can and could be studied. Alkanes can be used to estimate the botanical composition of plant mixtures, including mixed root mats, and since these compounds can remain in soil for a considerable period, they may also be used to describe the vegetation history of an area by analysis of soil strata. There may be potential for this approach to be extended into archaeological and forensic studies. Insects and spiders contain hydrocarbons (mainly branched-chain alkanes) in their cuticular wax, and preliminary tests have indicated that these compounds are recoverable in the faeces of bats and insect-eating birds; thus they could be used to determine the insect species composition of the diets of insectivores. Analysis of these waxes is relatively simple, and although good GC equipment is required, there is scope for laboratories which do not posses the equipment to make the initial extractions and purification (simple but laborious), with the final GC analysis undertaken by a collaborating laboratory. Thus there are many uses of plant and animal waxes as markers, and potential applications are probably limited only by our imagination.

The trials and tribulations of estimating the pasture intake of grazing animals

The present paper reviews estimation methods for measuring pasture intake of individual grazing animals, in particular, the use of indigestible plant markers. Natural alkanes and alcohols function essentially as an internal marker and thus accommodate differences in forage digestibility among individuals and those arising from interactions between supplement and forage. An estimate of diet composition partitions total intake into its component plant species. Estimates of diet composition require correction for incomplete faecal marker recovery, where relative recoveries (i.e. the recovery of the alkanes relative to each other) suffice. If estimates of whole-diet digestibility are also wanted, actual faecal alkane recoveries must be used. Using known labelled supplement intakes as a means of estimating the intake of all other diet components avoids the need to dose animals separately with synthetic alkanes. The results, problems and possible workarounds for a commercial system under development to estimate individual animal pasture intakes using known labelled-supplement intakes are outlined. A prototype bin system was trialled and, despite many initial technological problems, it showed enough promise for Sapien Technology to continue to develop the system with Proway Livestock.

Protocol for the analysis of n-alkanes and other plant-wax compounds and for their use as markers for quantifying the nutrient supply of large mammalian herbivores

Plant-wax markers can be used for estimating forage intake, diet composition and supplement intake in grazing livestock, wild ruminants and other mammals. We describe protocols for using the saturated hydrocarbons (alkanes) of plant wax as markers for estimating fecal output, intake and digestibility. Procedures for investigating digestion kinetics are also discussed. Alkanes can also be used to estimate diet composition and the procedures required to do this are also described, including the special case where supplementary feed is treated as a component of the diet composition estimate. The long-chain alcohols (LCOHs) and very long-chain fatty acids (VLCFAs) of plant wax show particular promise for discriminating a greater number of species in the diet. The use of all these plant-wax markers in nutrition studies depends on having quantitative, repeatable and mutually compatible assay procedures for alkanes, LCOHs and VLCFAs; we present protocols for these assays in detail. Analysis of a single sample of feces or plant material for all these plant-wax markers can be completed within 2 days; however, it is possible to process up to 50 samples (analyzed in duplicate) per week.