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Fernandes JRN, Teles AS, Fernandes TRS, Lima LDB, Balhara S, Gupta N, Teixeira S. Artificial Intelligence on Diagnostic Aid of Leprosy: A Systematic Literature Review. J Clin Med 2023; 13:180. [PMID: 38202187 PMCID: PMC10779723 DOI: 10.3390/jcm13010180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 12/20/2023] [Accepted: 12/25/2023] [Indexed: 01/12/2024] Open
Abstract
Leprosy is a neglected tropical disease that can cause physical injury and mental disability. Diagnosis is primarily clinical, but can be inconclusive due to the absence of initial symptoms and similarity to other dermatological diseases. Artificial intelligence (AI) techniques have been used in dermatology, assisting clinical procedures and diagnostics. In particular, AI-supported solutions have been proposed in the literature to aid in the diagnosis of leprosy, and this Systematic Literature Review (SLR) aims to characterize the state of the art. This SLR followed the preferred reporting items for systematic reviews and meta-analyses (PRISMA) framework and was conducted in the following databases: ACM Digital Library, IEEE Digital Library, ISI Web of Science, Scopus, and PubMed. Potentially relevant research articles were retrieved. The researchers applied criteria to select the studies, assess their quality, and perform the data extraction process. Moreover, 1659 studies were retrieved, of which 21 were included in the review after selection. Most of the studies used images of skin lesions, classical machine learning algorithms, and multi-class classification tasks to develop models to diagnose dermatological diseases. Most of the reviewed articles did not target leprosy as the study's primary objective but rather the classification of different skin diseases (among them, leprosy). Although AI-supported leprosy diagnosis is constantly evolving, research in this area is still in its early stage, then studies are required to make AI solutions mature enough to be transformed into clinical practice. Expanding research efforts on leprosy diagnosis, coupled with the advocacy of open science in leveraging AI for diagnostic support, can yield robust and influential outcomes.
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Affiliation(s)
- Jacks Renan Neves Fernandes
- PhD Program in Biotechnology—Northeast Biotechnology Network, Federal University of Piauí, Teresina 64049-550, Brazil;
| | - Ariel Soares Teles
- Postgraduate Program in Biotechnology, Parnaíba Delta Federal University, Parnaíba 64202-020, Brazil; (T.R.S.F.); (L.D.B.L.); (S.T.)
- Federal Institute of Maranhão, Araioses 65570-000, Brazil
| | - Thayaná Ribeiro Silva Fernandes
- Postgraduate Program in Biotechnology, Parnaíba Delta Federal University, Parnaíba 64202-020, Brazil; (T.R.S.F.); (L.D.B.L.); (S.T.)
| | - Lucas Daniel Batista Lima
- Postgraduate Program in Biotechnology, Parnaíba Delta Federal University, Parnaíba 64202-020, Brazil; (T.R.S.F.); (L.D.B.L.); (S.T.)
| | - Surjeet Balhara
- Department of Electronics & Communication Engineering, Bharati Vidyapeeth’s College of Engineering, New Delhi 110063, India;
| | - Nishu Gupta
- Department of Electronic Systems, Faculty of Information Technology and Electrical Engineering, Norwegian University of Science and Technology, 2815 Gjøvik, Norway;
| | - Silmar Teixeira
- Postgraduate Program in Biotechnology, Parnaíba Delta Federal University, Parnaíba 64202-020, Brazil; (T.R.S.F.); (L.D.B.L.); (S.T.)
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Nazari S, Garcia R. Automatic Skin Cancer Detection Using Clinical Images: A Comprehensive Review. Life (Basel) 2023; 13:2123. [PMID: 38004263 PMCID: PMC10672549 DOI: 10.3390/life13112123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Revised: 10/21/2023] [Accepted: 10/23/2023] [Indexed: 11/26/2023] Open
Abstract
Skin cancer has become increasingly common over the past decade, with melanoma being the most aggressive type. Hence, early detection of skin cancer and melanoma is essential in dermatology. Computational methods can be a valuable tool for assisting dermatologists in identifying skin cancer. Most research in machine learning for skin cancer detection has focused on dermoscopy images due to the existence of larger image datasets. However, general practitioners typically do not have access to a dermoscope and must rely on naked-eye examinations or standard clinical images. By using standard, off-the-shelf cameras to detect high-risk moles, machine learning has also proven to be an effective tool. The objective of this paper is to provide a comprehensive review of image-processing techniques for skin cancer detection using clinical images. In this study, we evaluate 51 state-of-the-art articles that have used machine learning methods to detect skin cancer over the past decade, focusing on clinical datasets. Even though several studies have been conducted in this field, there are still few publicly available clinical datasets with sufficient data that can be used as a benchmark, especially when compared to the existing dermoscopy databases. In addition, we observed that the available artifact removal approaches are not quite adequate in some cases and may also have a negative impact on the models. Moreover, the majority of the reviewed articles are working with single-lesion images and do not consider typical mole patterns and temporal changes in the lesions of each patient.
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He Z, Li X, Chen Y, Lv N, Cai Y. Attention-based dual-path feature fusion network for automatic skin lesion segmentation. BioData Min 2023; 16:28. [PMID: 37807076 PMCID: PMC10561442 DOI: 10.1186/s13040-023-00345-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Accepted: 09/27/2023] [Indexed: 10/10/2023] Open
Abstract
Automatic segmentation of skin lesions is a critical step in Computer Aided Diagnosis (CAD) of melanoma. However, due to the blurring of the lesion boundary, uneven color distribution, and low image contrast, resulting in poor segmentation result. Aiming at the problem of difficult segmentation of skin lesions, this paper proposes an Attention-based Dual-path Feature Fusion Network (ADFFNet) for automatic skin lesion segmentation. Firstly, in the spatial path, a Boundary Refinement (BR) module is designed for the output of low-level features to filter out irrelevant background information and retain more boundary details of the lesion area. Secondly, in the context path, a Multi-scale Feature Selection (MFS) module is constructed for high-level feature output to capture multi-scale context information and use the attention mechanism to filter out redundant semantic information. Finally, we design a Dual-path Feature Fusion (DFF) module, which uses high-level global attention information to guide the step-by-step fusion of high-level semantic features and low-level detail features, which is beneficial to restore image detail information and further improve the pixel-level segmentation accuracy of skin lesion. In the experiment, the ISIC 2018 and PH2 datasets are employed to evaluate the effectiveness of the proposed method. It achieves a performance of 0.890/ 0.925 and 0.933 /0.954 on the F1-score and SE index, respectively. Comparative analysis with state-of-the-art segmentation methods reveals that the ADFFNet algorithm exhibits superior segmentation performance.
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Affiliation(s)
- Zhenxiang He
- School of Information Engineering, Southwest University of Science and Technology, Mianyang, China
- Tianfu College of Southwest University of Finance and Economics, Mianyang, China
| | - Xiaoxia Li
- School of Information Engineering, Southwest University of Science and Technology, Mianyang, China
- Robot Technology Used for Special Environment Key Laboratory of Sichuan Province, Mianyang, China
| | - Yuling Chen
- School of Information Engineering, Southwest University of Science and Technology, Mianyang, China
- Robot Technology Used for Special Environment Key Laboratory of Sichuan Province, Mianyang, China
| | - Nianzu Lv
- School of Information Engineering, Southwest University of Science and Technology, Mianyang, China
- Robot Technology Used for Special Environment Key Laboratory of Sichuan Province, Mianyang, China
| | - Yong Cai
- School of manufacturing science and Engineering, Southwest University of Science and Technology, Mianyang, China.
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4
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Khan S, Ali H, Shah Z. Identifying the role of vision transformer for skin cancer-A scoping review. Front Artif Intell 2023; 6:1202990. [PMID: 37529760 PMCID: PMC10388102 DOI: 10.3389/frai.2023.1202990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Accepted: 07/03/2023] [Indexed: 08/03/2023] Open
Abstract
Introduction Detecting and accurately diagnosing early melanocytic lesions is challenging due to extensive intra- and inter-observer variabilities. Dermoscopy images are widely used to identify and study skin cancer, but the blurred boundaries between lesions and besieging tissues can lead to incorrect identification. Artificial Intelligence (AI) models, including vision transformers, have been proposed as a solution, but variations in symptoms and underlying effects hinder their performance. Objective This scoping review synthesizes and analyzes the literature that uses vision transformers for skin lesion detection. Methods The review follows the PRISMA-ScR (Preferred Reporting Items for Systematic Reviews and Meta-Analyses Extension for Scoping Revise) guidelines. The review searched online repositories such as IEEE Xplore, Scopus, Google Scholar, and PubMed to retrieve relevant articles. After screening and pre-processing, 28 studies that fulfilled the inclusion criteria were included. Results and discussions The review found that the use of vision transformers for skin cancer detection has rapidly increased from 2020 to 2022 and has shown outstanding performance for skin cancer detection using dermoscopy images. Along with highlighting intrinsic visual ambiguities, irregular skin lesion shapes, and many other unwanted challenges, the review also discusses the key problems that obfuscate the trustworthiness of vision transformers in skin cancer diagnosis. This review provides new insights for practitioners and researchers to understand the current state of knowledge in this specialized research domain and outlines the best segmentation techniques to identify accurate lesion boundaries and perform melanoma diagnosis. These findings will ultimately assist practitioners and researchers in making more authentic decisions promptly.
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Qasim Gilani S, Syed T, Umair M, Marques O. Skin Cancer Classification Using Deep Spiking Neural Network. J Digit Imaging 2023; 36:1137-1147. [PMID: 36690775 PMCID: PMC10287885 DOI: 10.1007/s10278-023-00776-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Revised: 12/30/2022] [Accepted: 01/02/2023] [Indexed: 01/24/2023] Open
Abstract
Skin cancer is one of the primary causes of death globally, and experts diagnose it by visual inspection, which can be inaccurate. The need for developing a computer-aided method to aid dermatologists in diagnosing skin cancer is highlighted by the fact that early identification can lower the number of deaths caused by skin malignancies. Among computer-aided techniques, deep learning is the most popular for identifying cancer from skin lesion images. Due to their power-efficient behavior, spiking neural networks are attractive deep neural networks for hardware implementation. We employed deep spiking neural networks using the surrogate gradient descent method to classify 3670 melanoma and 3323 non-melanoma images from the ISIC 2019 dataset. We achieved an accuracy of 89.57% and an F1 score of 90.07% using the proposed spiking VGG-13 model, which is higher than the VGG-13 and AlexNet using less trainable parameters.
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Affiliation(s)
- Syed Qasim Gilani
- Department of Electrical Engineering and Computer Science, Florida Atlantic University, Boca Raton, 33431 FL USA
| | - Tehreem Syed
- Department of Electrical Engineering and Computer Engineering, Technische Universität Dresden, Dresden, 01069 Saxony Germany
| | - Muhammad Umair
- Department of Electrical and Computer Engineering, George Mason University, Fairfax, 22030 VA USA
| | - Oge Marques
- Department of Electrical Engineering and Computer Science, Florida Atlantic University, Boca Raton, 33431 FL USA
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6
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Bakheet S, Alsubai S, El-Nagar A, Alqahtani A. A Multi-Feature Fusion Framework for Automatic Skin Cancer Diagnostics. Diagnostics (Basel) 2023; 13:diagnostics13081474. [PMID: 37189574 DOI: 10.3390/diagnostics13081474] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 04/07/2023] [Accepted: 04/17/2023] [Indexed: 05/17/2023] Open
Abstract
Malignant melanoma is the most invasive skin cancer and is currently regarded as one of the deadliest disorders; however, it can be cured more successfully if detected and treated early. Recently, CAD (computer-aided diagnosis) systems have emerged as a powerful alternative tool for the automatic detection and categorization of skin lesions, such as malignant melanoma or benign nevus, in given dermoscopy images. In this paper, we propose an integrated CAD framework for rapid and accurate melanoma detection in dermoscopy images. Initially, an input dermoscopy image is pre-processed by using a median filter and bottom-hat filtering for noise reduction, artifact removal, and, thus, enhancing the image quality. After this, each skin lesion is described by an effective skin lesion descriptor with high discrimination and descriptiveness capabilities, which is constructed by calculating the HOG (Histogram of Oriented Gradient) and LBP (Local Binary Patterns) and their extensions. After feature selection, the lesion descriptors are fed into three supervised machine learning classification models, namely SVM (Support Vector Machine), kNN (k-Nearest Neighbors), and GAB (Gentle AdaBoost), to diagnostically classify melanocytic skin lesions into one of two diagnostic categories, melanoma or nevus. Experimental results achieved using 10-fold cross-validation on the publicly available MED-NODEE dermoscopy image dataset demonstrate that the proposed CAD framework performs either competitively or superiorly to several state-of-the-art methods with stronger training settings in relation to various diagnostic metrics, such as accuracy (94%), specificity (92%), and sensitivity (100%).
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Affiliation(s)
- Samy Bakheet
- Faculty of Computers and Artificial Intelligence, Sohag University, Sohag 82524, Egypt
- Institute for Information Technology and Communications (IIKT), Otto-von-Guericke-University Magdeburg, D-39106 Magdeburg, Germany
| | - Shtwai Alsubai
- College of Computer Engineering and Sciences, Prince Sattam bin Abdulaziz University, Al Kharj 11942, Saudi Arabia
| | - Aml El-Nagar
- Faculty of Computers and Artificial Intelligence, Sohag University, Sohag 82524, Egypt
| | - Abdullah Alqahtani
- College of Computer Engineering and Sciences, Prince Sattam bin Abdulaziz University, Al Kharj 11942, Saudi Arabia
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Hasan MK, Ahamad MA, Yap CH, Yang G. A survey, review, and future trends of skin lesion segmentation and classification. Comput Biol Med 2023; 155:106624. [PMID: 36774890 DOI: 10.1016/j.compbiomed.2023.106624] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2022] [Revised: 01/04/2023] [Accepted: 01/28/2023] [Indexed: 02/03/2023]
Abstract
The Computer-aided Diagnosis or Detection (CAD) approach for skin lesion analysis is an emerging field of research that has the potential to alleviate the burden and cost of skin cancer screening. Researchers have recently indicated increasing interest in developing such CAD systems, with the intention of providing a user-friendly tool to dermatologists to reduce the challenges encountered or associated with manual inspection. This article aims to provide a comprehensive literature survey and review of a total of 594 publications (356 for skin lesion segmentation and 238 for skin lesion classification) published between 2011 and 2022. These articles are analyzed and summarized in a number of different ways to contribute vital information regarding the methods for the development of CAD systems. These ways include: relevant and essential definitions and theories, input data (dataset utilization, preprocessing, augmentations, and fixing imbalance problems), method configuration (techniques, architectures, module frameworks, and losses), training tactics (hyperparameter settings), and evaluation criteria. We intend to investigate a variety of performance-enhancing approaches, including ensemble and post-processing. We also discuss these dimensions to reveal their current trends based on utilization frequencies. In addition, we highlight the primary difficulties associated with evaluating skin lesion segmentation and classification systems using minimal datasets, as well as the potential solutions to these difficulties. Findings, recommendations, and trends are disclosed to inform future research on developing an automated and robust CAD system for skin lesion analysis.
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Affiliation(s)
- Md Kamrul Hasan
- Department of Bioengineering, Imperial College London, UK; Department of Electrical and Electronic Engineering (EEE), Khulna University of Engineering & Technology (KUET), Khulna 9203, Bangladesh.
| | - Md Asif Ahamad
- Department of Electrical and Electronic Engineering (EEE), Khulna University of Engineering & Technology (KUET), Khulna 9203, Bangladesh.
| | - Choon Hwai Yap
- Department of Bioengineering, Imperial College London, UK.
| | - Guang Yang
- National Heart and Lung Institute, Imperial College London, UK; Cardiovascular Research Centre, Royal Brompton Hospital, UK.
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8
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Namburu A, Mohan S, Chakkaravarthy S, Selvaraj P. Skin Cancer Segmentation Based on Triangular Intuitionistic Fuzzy Sets. SN COMPUTER SCIENCE 2023; 4:228. [DOI: 10.1007/s42979-023-01701-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 01/20/2023] [Indexed: 09/15/2023]
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9
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Jiang Y, Dong J, Cheng T, Zhang Y, Lin X, Liang J. iU-Net: a hybrid structured network with a novel feature fusion approach for medical image segmentation. BioData Min 2023; 16:5. [PMID: 36805687 PMCID: PMC9942350 DOI: 10.1186/s13040-023-00320-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Accepted: 01/04/2023] [Indexed: 02/23/2023] Open
Abstract
In recent years, convolutional neural networks (CNNs) have made great achievements in the field of medical image segmentation, especially full convolutional neural networks based on U-shaped structures and skip connections. However, limited by the inherent limitations of convolution, CNNs-based methods usually exhibit limitations in modeling long-range dependencies and are unable to extract large amounts of global contextual information, which deprives neural networks of the ability to adapt to different visual modalities. In this paper, we propose our own model, which is called iU-Net bacause its structure closely resembles the combination of i and U. iU-Net is a multiple encoder-decoder structure combining Swin Transformer and CNN. We use a hierarchical Swin Transformer structure with shifted windows as the primary encoder and convolution as the secondary encoder to complement the context information extracted by the primary encoder. To sufficiently fuse the feature information extracted from multiple encoders, we design a feature fusion module (W-FFM) based on wave function representation. Besides, a three branch up sampling method(Tri-Upsample) has developed to replace the patch expand in the Swin Transformer, which can effectively avoid the Checkerboard Artifacts caused by the patch expand. On the skin lesion region segmentation task, the segmentation performance of iU-Net is optimal, with Dice and Iou reaching 90.12% and 83.06%, respectively. To verify the generalization of iU-Net, we used the model trained on ISIC2018 dataset to test on PH2 dataset, and achieved 93.80% Dice and 88.74% IoU. On the lung feild segmentation task, the iU-Net achieved optimal results on IoU and Precision, reaching 98.54% and 94.35% respectively. Extensive experiments demonstrate the segmentation performance and generalization ability of iU-Net.
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Affiliation(s)
- Yun Jiang
- grid.412260.30000 0004 1760 1427College of Computer Science and Engineering, Northwest Normal University, Lanzhou, China
| | - Jinkun Dong
- College of Computer Science and Engineering, Northwest Normal University, Lanzhou, China.
| | - Tongtong Cheng
- grid.412260.30000 0004 1760 1427College of Computer Science and Engineering, Northwest Normal University, Lanzhou, China
| | - Yuan Zhang
- grid.412260.30000 0004 1760 1427College of Computer Science and Engineering, Northwest Normal University, Lanzhou, China
| | - Xin Lin
- grid.412260.30000 0004 1760 1427College of Computer Science and Engineering, Northwest Normal University, Lanzhou, China
| | - Jing Liang
- grid.412260.30000 0004 1760 1427College of Computer Science and Engineering, Northwest Normal University, Lanzhou, China
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Teh R, Azimi A, Pupo GM, Ali M, Mann GJ, Fernández-Peñas P. Genomic and proteomic findings in early melanoma and opportunities for early diagnosis. Exp Dermatol 2023; 32:104-116. [PMID: 36373875 DOI: 10.1111/exd.14705] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Revised: 11/02/2022] [Accepted: 11/10/2022] [Indexed: 11/16/2022]
Abstract
Overdiagnosis of early melanoma is a significant problem. Due to subtle unique and overlapping clinical and histological criteria between pigmented lesions and the risk of mortality from melanoma, some benign pigmented lesions are diagnosed as melanoma. Although histopathology is the gold standard to diagnose melanoma, there is a demand to find alternatives that are more accurate and cost-effective. In the current "omics" era, there is gaining interest in biomarkers to help diagnose melanoma early and to further understand the mechanisms driving tumor progression. Genomic investigations have attempted to differentiate malignant melanoma from benign pigmented lesions. However, genetic biomarkers of early melanoma diagnosis have not yet proven their value in the clinical setting. Protein biomarkers may be more promising since they directly influence tissue phenotype, a result of by-products of genomic mutations, posttranslational modifications and environmental factors. Uncovering relevant protein biomarkers could increase confidence in their use as diagnostic signatures. Currently, proteomic investigations of melanoma progression from pigmented lesions are limited. Studies have previously characterised the melanoma proteome from cultured cell lines and clinical samples such as serum and tissue. This has been useful in understanding how melanoma progresses into metastasis and development of resistance to adjuvant therapies. Currently, most studies focus on metastatic melanoma to find potential drug therapy targets, prognostic factors and markers of resistance. This paper reviews recent advancements in the genomics and proteomic fields and reports potential avenues, which could help identify and differentiate melanoma from benign pigmented lesions and prevent the progression of melanoma.
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Affiliation(s)
- Rachel Teh
- Faculty of Medicine and Health, Westmead Clinical School, The University of Sydney, Westmead, New South Wales, Australia.,Department of Dermatology, Westmead Hospital, Westmead, New South Wales, Australia.,Centre for Cancer Research, Westmead Institute for Medical Research, The University of Sydney, Westmead, New South Wales, Australia
| | - Ali Azimi
- Faculty of Medicine and Health, Westmead Clinical School, The University of Sydney, Westmead, New South Wales, Australia.,Department of Dermatology, Westmead Hospital, Westmead, New South Wales, Australia.,Centre for Cancer Research, Westmead Institute for Medical Research, The University of Sydney, Westmead, New South Wales, Australia
| | - Gulietta M Pupo
- Faculty of Medicine and Health, Westmead Clinical School, The University of Sydney, Westmead, New South Wales, Australia.,Department of Dermatology, Westmead Hospital, Westmead, New South Wales, Australia.,Centre for Cancer Research, Westmead Institute for Medical Research, The University of Sydney, Westmead, New South Wales, Australia
| | - Marina Ali
- Faculty of Medicine and Health, Westmead Clinical School, The University of Sydney, Westmead, New South Wales, Australia
| | - Graham J Mann
- Centre for Cancer Research, Westmead Institute for Medical Research, The University of Sydney, Westmead, New South Wales, Australia.,The John Curtin School of Medical Research, College of Health and Medicine, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Pablo Fernández-Peñas
- Faculty of Medicine and Health, Westmead Clinical School, The University of Sydney, Westmead, New South Wales, Australia.,Department of Dermatology, Westmead Hospital, Westmead, New South Wales, Australia.,Centre for Cancer Research, Westmead Institute for Medical Research, The University of Sydney, Westmead, New South Wales, Australia
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Malignant melanoma diagnosis applying a machine learning method based on the combination of nonlinear and texture features. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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12
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Skin lesion classification using multi-resolution empirical mode decomposition and local binary pattern. PLoS One 2022; 17:e0274896. [PMID: 36126072 PMCID: PMC9488768 DOI: 10.1371/journal.pone.0274896] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Accepted: 09/06/2022] [Indexed: 11/26/2022] Open
Abstract
Skin cancer is the most common type of cancer in many parts of the world. As skin cancers start as skin lesions, it is important to identify precancerous skin lesions early. In this paper we propose an image based skin lesion identification to classify seven different classes of skin lesions. First, Multi Resolution Empirical Mode Decomposition (MREMD) is used to decompose each skin lesion image into a few Bidimensional intrinsic mode functions (BIMF). MREMD is a simplified bidimensional empirical mode decomposition (BEMD) that employs downsampling and upsampling (interpolation) in the upper and lower envelope formation to speed up the decomposition process. A few BIMFs are extracted from the image using MREMD. The next step is to locate the lesion or the region of interest (ROI) in the image using active contour. Then Local Binary Pattern (LBP) is applied to the ROI of the image and its first BIMF to extract a total of 512 texture features from the lesion area. In the training phase, texture features of seven different classes of skin lesions are used to train an Artificial Neural Network (ANN) classifier. Altogether, 490 images from HAM10000 dataset are used to train the ANN. Then the accuracy of the approach is evaluated using 315 test images that are different from the training images. The test images are taken from the same dataset and each test image contains one type of lesion from the seven types that are classified. From each test image, 512 texture features are extracted from the lesion area and introduced to the classifier to determine its class. The proposed method achieves an overall classification rate of 98.9%.
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13
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Hanlon KL, Wei G, Correa-Selm L, Grichnik JM. Dermoscopy and skin imaging light sources: a comparison and review of spectral power distribution and color consistency. JOURNAL OF BIOMEDICAL OPTICS 2022; 27:080902. [PMID: 36452032 PMCID: PMC9360608 DOI: 10.1117/1.jbo.27.8.080902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Accepted: 07/15/2022] [Indexed: 06/17/2023]
Abstract
SIGNIFICANCE Dermoscopes incorporate light, polarizers, and optical magnification into a handheld tool that is commonly used by dermatologists to evaluate skin findings. Diagnostic accuracy is improved when dermoscopes are used, and some major artificial intelligence (AI) projects have been accomplished using dermocopic images. Color rendering consistency and fidelity are crucial for clinical diagnostics, AI, and image processing applications. AIM With many devices available on the market, our objective was to measure the emission spectra of various dermoscopes, compare them with other light sources, and illustrate variations in reflected colors from images of a reference sample. APPROACH A spectrometer measured the spectral power distribution (SPD) produced by four dermoscope models and three alternate light sources, illustrating differences in the emission spectra. Most dermoscopes use light-emitting diodes (LEDs), which are inconsistent when compared with one another. An LED was compared with halogen, xenon-arc, and daylight sources. Images of a micro ColorChecker were acquired from several sources, and three specific colors were selected to compare in CIELAB color space. Color consistency and color fidelity measured by color rendering index (CRI) and TM-30-18 graphical vectors show variation in saturation and chroma fidelity. RESULTS A marked degree of variation was observed in both the emission and reflected light coming from different dermoscopes and compared with other sources. The same chromophores appeared differently depending on the light source used. CONCLUSIONS A lack of uniform illumination resulted in inconsistent image color and likely impacted metamerism and visibility of skin chromophores in real-world settings. Artificial light in skin examinations, especially LEDs, may present challenges for the visual separation of specific colors. Attention to LEDs SPD may be important, especially as the field increases dependency on machine/computer vision.
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Affiliation(s)
- Katharine L. Hanlon
- University of South Florida, Department of Dermatology and Cutaneous Surgery, Tampa, Florida, United States
- Moffitt Cancer Center, Cutaneous Oncology, Tampa, Florida, United States
| | - Grace Wei
- University of South Florida, Morsani College of Medicine, Tampa, Florida, United States
| | - Lilia Correa-Selm
- University of South Florida, Department of Dermatology and Cutaneous Surgery, Tampa, Florida, United States
- Moffitt Cancer Center, Cutaneous Oncology, Tampa, Florida, United States
| | - James M. Grichnik
- University of South Florida, Department of Dermatology and Cutaneous Surgery, Tampa, Florida, United States
- Moffitt Cancer Center, Cutaneous Oncology, Tampa, Florida, United States
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López-Labraca J, González-Díaz I, Díaz-de-María F, Casado AF. An interpretable CNN-based CAD system for skin lesion diagnosis. Artif Intell Med 2022; 132:102370. [DOI: 10.1016/j.artmed.2022.102370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 07/27/2022] [Accepted: 07/27/2022] [Indexed: 11/02/2022]
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15
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Jütte L, Sharma G, Patel H, Roth B. Registration of polarimetric images for in vivo skin diagnostics. JOURNAL OF BIOMEDICAL OPTICS 2022; 27:096001. [PMID: 36042549 PMCID: PMC9424913 DOI: 10.1117/1.jbo.27.9.096001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Accepted: 08/12/2022] [Indexed: 06/15/2023]
Abstract
SIGNIFICANCE Mueller matrix (MM) polarimetry is a promising tool for the detection of skin cancer. Polarimetric in vivo measurements often suffer from misalignment of the polarimetric images due to motion, which can lead to false results. AIM We aim to provide an easy-to-implement polarimetric image data registration method to ensure proper image alignment. APPROACH A feature-based image registration is implemented for an MM polarimeter for phantom and in vivo human skin measurements. RESULTS We show that the keypoint-based registration of polarimetric images is necessary for in vivo skin polarimetry to ensure reliable results. Further, we deliver an efficient semiautomated method for the registration of polarimetric images. CONCLUSIONS Image registration for in vivo polarimetry of human skin is required for improved diagnostics and can be efficiently enhanced with a keypoint-based approach.
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Affiliation(s)
- Lennart Jütte
- Leibniz University Hannover, Hannover Centre for Optical Technologies, Hannover, Germany
| | - Gaurav Sharma
- Leibniz University Hannover, Hannover Centre for Optical Technologies, Hannover, Germany
| | - Harshkumar Patel
- Leibniz University Hannover, Hannover Centre for Optical Technologies, Hannover, Germany
| | - Bernhard Roth
- Leibniz University Hannover, Hannover Centre for Optical Technologies, Hannover, Germany
- Leibniz University Hannover, Cluster of Excellence PhoenixD, Hannover, Germany
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16
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Talavera-Martínez L, Bibiloni P, Giacaman A, Taberner R, Hernando LJDP, González-Hidalgo M. A novel approach for skin lesion symmetry classification with a deep learning model. Comput Biol Med 2022; 145:105450. [DOI: 10.1016/j.compbiomed.2022.105450] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 03/02/2022] [Accepted: 03/22/2022] [Indexed: 11/29/2022]
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17
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Styła M, Giżewski T. The Study of Usefulness of a Set of Fractal Parameters to Build Classes of Disease Units Based on Images of Pigmented Skin Lesions. Diagnostics (Basel) 2021; 11:1773. [PMID: 34679471 PMCID: PMC8535145 DOI: 10.3390/diagnostics11101773] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 09/15/2021] [Accepted: 09/24/2021] [Indexed: 11/17/2022] Open
Abstract
Dermatoscopic images are also increasingly used to train artificial neural networks for the future to provide fully automatic diagnostic systems capable of determining the type of pigmented skin lesion. Therefore, fractal analysis was used in this study to measure the irregularity of pigmented skin lesion surfaces. This paper presents selected results from individual stages of preliminary processing of the dermatoscopic image on pigmented skin lesion, in which fractal analysis was used and referred to the effectiveness of classification by fuzzy or statistical methods. Classification of the first unsupervised stage was performed using the method of analysis of scatter graphs and the fuzzy method using the Kohonen network. The results of the Kohonen network learning process with an input vector consisting of eight elements prove that neuronal activation requires a larger learning set with greater differentiation. For the same training conditions, the final results are at a higher level and can be classified as weaker. Statistics of factor analysis were proposed, allowing for the reduction in variables, and the directions of further studies were indicated.
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Affiliation(s)
- Monika Styła
- Chair and Department of Biophysics, Medical University of Lublin, 20-090 Lublin, Poland
- Department of Electrical Engineering and Electrotechnologies, Faculty of Electrical Engineering and Computer Science, Lublin University of Technology, 20-618 Lublin, Poland;
| | - Tomasz Giżewski
- Department of Electrical Engineering and Electrotechnologies, Faculty of Electrical Engineering and Computer Science, Lublin University of Technology, 20-618 Lublin, Poland;
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18
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Wang Y, Cai J, Louie DC, Wang ZJ, Lee TK. Incorporating clinical knowledge with constrained classifier chain into a multimodal deep network for melanoma detection. Comput Biol Med 2021; 137:104812. [PMID: 34507158 DOI: 10.1016/j.compbiomed.2021.104812] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Revised: 08/25/2021] [Accepted: 08/25/2021] [Indexed: 10/20/2022]
Abstract
In recent years, vast developments in Computer-Aided Diagnosis (CAD) for skin diseases have generated much interest from clinicians and other eventual end-users of this technology. Introducing clinical domain knowledge to these machine learning strategies can help dispel the black box nature of these tools, strengthening clinician trust. Clinical domain knowledge also provides new information channels which can improve CAD diagnostic performance. In this paper, we propose a novel framework for malignant melanoma (MM) detection by fusing clinical images and dermoscopic images. The proposed method combines a multi-labeled deep feature extractor and clinically constrained classifier chain (CC). This allows the 7-point checklist, a clinician diagnostic algorithm, to be included in the decision level while maintaining the clinical importance of the major and minor criteria in the checklist. Our proposed framework achieved an average accuracy of 81.3% for detecting all criteria and melanoma when testing on a publicly available 7-point checklist dataset. This is the highest reported results, outperforming state-of-the-art methods in the literature by 6.4% or more. Analyses also show that the proposed system surpasses the single modality system of using either clinical images or dermoscopic images alone and the systems without adopting the approach of multi-label and clinically constrained classifier chain. Our carefully designed system demonstrates a substantial improvement over melanoma detection. By keeping the familiar major and minor criteria of the 7-point checklist and their corresponding weights, the proposed system may be more accepted by physicians as a human-interpretable CAD tool for automated melanoma detection.
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Affiliation(s)
- Yuheng Wang
- School of Biomedical Engineering, University of British Columbia, Vancouver, BC, Canada; Department of Dermatology and Skin Science, University of British Columbia, Vancouver, BC, Canada; Photomedicine Institute, Vancouver Coast Health Research Institute, Vancouver, BC, Canada; Departments of Cancer Control Research and Integrative Oncology, BC Cancer, Vancouver, BC, Canada
| | - Jiayue Cai
- School of Biomedical Engineering, Health Science Center, Shenzhen University, Shenzhen, China; Department of Electrical and Computer Engineering, University of British Columbia, Vancouver, BC, Canada.
| | - Daniel C Louie
- School of Biomedical Engineering, University of British Columbia, Vancouver, BC, Canada; Department of Dermatology and Skin Science, University of British Columbia, Vancouver, BC, Canada; Photomedicine Institute, Vancouver Coast Health Research Institute, Vancouver, BC, Canada; Departments of Cancer Control Research and Integrative Oncology, BC Cancer, Vancouver, BC, Canada
| | - Z Jane Wang
- School of Biomedical Engineering, University of British Columbia, Vancouver, BC, Canada; Department of Electrical and Computer Engineering, University of British Columbia, Vancouver, BC, Canada
| | - Tim K Lee
- School of Biomedical Engineering, University of British Columbia, Vancouver, BC, Canada; Department of Dermatology and Skin Science, University of British Columbia, Vancouver, BC, Canada; Photomedicine Institute, Vancouver Coast Health Research Institute, Vancouver, BC, Canada; Departments of Cancer Control Research and Integrative Oncology, BC Cancer, Vancouver, BC, Canada
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19
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Machine Learning and Deep Learning Methods for Skin Lesion Classification and Diagnosis: A Systematic Review. Diagnostics (Basel) 2021; 11:diagnostics11081390. [PMID: 34441324 PMCID: PMC8391467 DOI: 10.3390/diagnostics11081390] [Citation(s) in RCA: 62] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2021] [Revised: 07/25/2021] [Accepted: 07/27/2021] [Indexed: 12/04/2022] Open
Abstract
Computer-aided systems for skin lesion diagnosis is a growing area of research. Recently, researchers have shown an increasing interest in developing computer-aided diagnosis systems. This paper aims to review, synthesize and evaluate the quality of evidence for the diagnostic accuracy of computer-aided systems. This study discusses the papers published in the last five years in ScienceDirect, IEEE, and SpringerLink databases. It includes 53 articles using traditional machine learning methods and 49 articles using deep learning methods. The studies are compared based on their contributions, the methods used and the achieved results. The work identified the main challenges of evaluating skin lesion segmentation and classification methods such as small datasets, ad hoc image selection and racial bias.
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20
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Fast fully automatic detection, classification and 3D reconstruction of pulmonary nodules in CT images by local image feature analysis. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102790] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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21
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Polymeric micelle mediated follicular delivery of spironolactone: Targeting the mineralocorticoid receptor to prevent glucocorticoid-induced activation and delayed cutaneous wound healing. Int J Pharm 2021; 604:120773. [PMID: 34090990 DOI: 10.1016/j.ijpharm.2021.120773] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Revised: 05/31/2021] [Accepted: 06/02/2021] [Indexed: 01/19/2023]
Abstract
Impaired wound healing in patients receiving glucocorticoid therapy is a serious clinical concern: mineralocorticoid receptor (MR) antagonists can counter glucocorticoid-induced off-target activation of MR receptors. The aim of this study was to investigate the cutaneous delivery of the potent MR antagonist, spironolactone (SPL), from polymeric micelle nanocarriers, prepared using a biodegradable copolymer, methoxy-poly(ethylene glycol)-di-hexyl-substituted-poly(lactic acid). Immunofluorescent labelling of the MR showed that it was principally located in the pilosebaceous unit (PSU), justifying the study rationale since polymeric micelles accumulate preferentially in appendageal structures. Cutaneous biodistribution studies under infinite and finite dose conditions, demonstrated delivery of pharmacologically relevant amounts of SPL to the epidermis and upper dermis. Preferential PSU targeting was confirmed by comparing amounts of SPL in PSU-containing and PSU-free skin biopsies: SPL nanomicelles showed 5-fold higher delivery of SPL in the PSU-containing biopsies, 0.54 ± 0.18 ng/mm2vs. 0.10 ± 0.03 ng/mm2, after application of a hydrogel in finite conditions. Canrenone, an active metabolite of SPL, was also quantified in skin samples. In addition to being used for the treatment of delayed cutaneous wound healing by site-specific antagonism of the MR, the formulation might also be used to treat pilosebaceous androgen-related skin diseases, e.g. acne vulgaris, since SPL is a potent androgen receptor antagonist.
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22
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Pai VV, Pai RB. Artificial intelligence in dermatology and healthcare: An overview. Indian J Dermatol Venereol Leprol 2021; 87:457-467. [PMID: 34114421 DOI: 10.25259/ijdvl_518_19] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2019] [Accepted: 12/01/2020] [Indexed: 12/15/2022]
Abstract
Many aspects of our life are affected by technology. One of the most discussed advancements of modern technologies is artificial intelligence. It involves computational methods which in some way mimic the human thought process. Just like other branches, the medical field also has come under the ambit of artificial intelligence. Almost every field in medicine has been touched by its effect in one way or the other. Prominent among them are medical diagnosis, medical statistics, robotics, and human biology. Medical imaging is one of the foremost specialties with artificial intelligence applications, wherein deep learning methods like artificial neural networks are commonly used. artificial intelligence application in dermatology was initially restricted to the analysis of melanoma and pigmentary skin lesions, has now expanded and covers many dermatoses. Though the applications of artificial intelligence are ever increasing, large data requirements, interpretation of data and ethical concerns are some of its limitations in the present day.
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Affiliation(s)
| | - Rohini Bhat Pai
- Department of Anaesthesiology, Goa Medical College, Bambolim, Goa, India
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23
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Tong X, Wei J, Sun B, Su S, Zuo Z, Wu P. ASCU-Net: Attention Gate, Spatial and Channel Attention U-Net for Skin Lesion Segmentation. Diagnostics (Basel) 2021; 11:501. [PMID: 33809048 PMCID: PMC7999819 DOI: 10.3390/diagnostics11030501] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Revised: 03/08/2021] [Accepted: 03/09/2021] [Indexed: 01/29/2023] Open
Abstract
Segmentation of skin lesions is a challenging task because of the wide range of skin lesion shapes, sizes, colors, and texture types. In the past few years, deep learning networks such as U-Net have been successfully applied to medical image segmentation and exhibited faster and more accurate performance. In this paper, we propose an extended version of U-Net for the segmentation of skin lesions using the concept of the triple attention mechanism. We first selected regions using attention coefficients computed by the attention gate and contextual information. Second, a dual attention decoding module consisting of spatial attention and channel attention was used to capture the spatial correlation between features and improve segmentation performance. The combination of the three attentional mechanisms helped the network to focus on a more relevant field of view of the target. The proposed model was evaluated using three datasets, ISIC-2016, ISIC-2017, and PH2. The experimental results demonstrated the effectiveness of our method with strong robustness to the presence of irregular borders, lesion and skin smooth transitions, noise, and artifacts.
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Affiliation(s)
| | - Junyu Wei
- College of Intelligence Science and Technology, National University of Defense Technology, Changsha 410073, China; (X.T.); (B.S.); (S.S.); (Z.Z.); (P.W.)
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24
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Laimer J, Bruckmoser E, Helten T, Kofler B, Zelger B, Brunner A, Zelger B, Huck CW, Tappert M, Rogge D, Schirmer M, Pallua JD. Hyperspectral imaging as a diagnostic tool to differentiate between amalgam tattoos and other dark pigmented intraoral lesions. JOURNAL OF BIOPHOTONICS 2021; 14:e202000424. [PMID: 33210464 DOI: 10.1002/jbio.202000424] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Revised: 11/13/2020] [Accepted: 11/15/2020] [Indexed: 06/11/2023]
Abstract
The goal of this project is to identify any in-depth benefits and drawbacks in the diagnosis of amalgam tattoos and other pigmented intraoral lesions using hyperspectral imagery collected from amalgam tattoos, benign, and malignant melanocytic neoplasms. Software solutions capable of classifying pigmented lesions of the skin already exist, but conventional red, green and blue images may be reaching an upper limit in their performance. Emerging technologies, such as hyperspectral imaging (HSI) utilize more than a hundred, continuous data channels, while also collecting data in the infrared. A total of 18 paraffin-embedded human tissue specimens of dark pigmented intraoral lesions (including the lip) were analyzed using visible and near-infrared (VIS-NIR) hyperspectral imagery obtained from HE-stained histopathological slides. Transmittance data were collected between 450 and 900 nm using a snapshot camera mounted to a microscope with a halogen light source. VIS-NIR spectra collected from different specimens, such as melanocytic cells and other tissues (eg, epithelium), produced distinct and diagnostic spectra that were used to identify these materials in several regions of interest, making it possible to distinguish between intraoral amalgam tattoos (intramucosal metallic foreign bodies) and melanocytic lesions of the intraoral mucosa and the lip (each with P < .01 using the independent t test). HSI is presented as a diagnostic tool for the rapidly growing field of digital pathology. In this preliminary study, amalgam tattoos were reliably differentiated from melanocytic lesions of the oral cavity and the lip.
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Affiliation(s)
- Johannes Laimer
- University Hospital for Craniomaxillofacial and Oral Surgery, Medical University of Innsbruck, Innsbruck, Austria
| | | | - Tom Helten
- University Hospital for Craniomaxillofacial and Oral Surgery, Medical University of Innsbruck, Innsbruck, Austria
| | - Barbara Kofler
- University Hospital of Otorhinolaryngology, Medical University of Innsbruck, Innsbruck, Austria
| | - Bettina Zelger
- Institute of Pathology, Neuropathology and Molecular Pathology, Medical University of Innsbruck, Innsbruck, Austria
| | - Andrea Brunner
- Institute of Pathology, Neuropathology and Molecular Pathology, Medical University of Innsbruck, Innsbruck, Austria
| | - Bernhard Zelger
- University Hospital for Dermatology, Venereology and Allergology, Medical University of Innsbruck, Innsbruck, Austria
| | - Christian W Huck
- Institute of Analytical Chemistry and Radiochemistry, Leopold Franzens University of Innsbruck, Innsbruck, Austria
| | - Michelle Tappert
- Hyperspectral Intelligence Inc., Gibsons, British Columbia, Canada
| | - Derek Rogge
- Hyperspectral Intelligence Inc., Gibsons, British Columbia, Canada
| | - Michael Schirmer
- Department of Internal Medicine, Clinic II, Medical University of Innsbruck, Innsbruck, Austria
| | - Johannes D Pallua
- Institute of Pathology, Neuropathology and Molecular Pathology, Medical University of Innsbruck, Innsbruck, Austria
- University Hospital for Orthopedics and Traumatology, Medical University of Innsbruck, Innsbruck, Austria
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25
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Melanoma Detection Using Spatial and Spectral Analysis on Superpixel Graphs. J Digit Imaging 2021; 34:162-181. [PMID: 33415444 DOI: 10.1007/s10278-020-00401-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Revised: 08/31/2020] [Accepted: 11/18/2020] [Indexed: 10/22/2022] Open
Abstract
Melanoma is the most fatal type of skin cancer. Detection of melanoma from dermoscopic images in an early stage is critical for improving survival rates. Numerous image processing methods have been devised to discriminate between melanoma and benign skin lesions. Previous studies show that the detection performance depends significantly on the skin lesion image representations and features. In this work, we propose a melanoma detection approach that combines graph-theoretic representations with conventional dermoscopic image features to enhance the detection performance. Instead of using individual pixels of skin lesion images as nodes for complex graph representations, superpixels are generated from the skin lesion images and are then used as graph nodes in a superpixel graph. An edge of such a graph connects two adjacent superpixels where the edge weight is a function of the distance between feature descriptors of these superpixels. A graph signal can be defined by assigning to each graph node the output of some single-valued function of the associated superpixel descriptor. Features are extracted from weighted and unweighted graph models in the vertex domain at both local and global scales and in the spectral domain using the graph Fourier transform (GFT). Other features based on color, geometry and texture are extracted from the skin lesion images. Several conventional and ensemble classifiers have been trained and tested on different combinations from those features using two datasets of dermoscopic images from the International Skin Imaging Collaboration (ISIC) archive. The proposed system achieved an AUC of [Formula: see text], an accuracy of [Formula: see text], a specificity of [Formula: see text] and a sensitivity of [Formula: see text].
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26
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Maglogiannis I, Kontogianni G, Papadodima O, Karanikas H, Billiris A, Chatziioannou A. An Integrated Platform for Skin Cancer Heterogenous and Multilayered Data Management. J Med Syst 2021; 45:10. [PMID: 33404959 DOI: 10.1007/s10916-020-01679-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Accepted: 11/23/2020] [Indexed: 01/22/2023]
Abstract
Electronic health record (EHR) systems improve health care services by allowing the combination of health data with clinical decision support features and clinical image analyses. This study presents a modular and distributed platform that is able to integrate and accommodate heterogeneous, multidimensional (omics, histological images and clinical) data for the multi-angled portrayal and management of skin cancer patients. The proposed design offers a layered analytical framework as an expansion of current EHR systems, which can integrate high-volume molecular -omics data, imaging data, as well as relevant clinical observations. We present a case study in the field of dermatology, where we attempt to combine the multilayered information for the early detection and characterization of melanoma. The specific architecture aspires to lower the barrier for the introduction of personalized therapeutic approaches, towards precision medicine. The paper describes the technical issues of implementation, along with an initial evaluation of the system and discussion.
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Affiliation(s)
- Ilias Maglogiannis
- Department of Digital Systems, University of Piraeus, 126 Grigoriou Lambraki, 18534, Piraeus, Greece.
| | - Georgia Kontogianni
- Department of Digital Systems, University of Piraeus, 126 Grigoriou Lambraki, 18534, Piraeus, Greece
- National Hellenic Research Foundation, 48 Vassileos Constantinou Ave, 11635, Athens, Greece
- Center of Systems Biology, Biomedical Research Foundation of the Academy of Athens, 4 Soranou Ephessiou, 11527, Athens, Greece
| | - Olga Papadodima
- National Hellenic Research Foundation, 48 Vassileos Constantinou Ave, 11635, Athens, Greece
| | | | | | - Aristotelis Chatziioannou
- National Hellenic Research Foundation, 48 Vassileos Constantinou Ave, 11635, Athens, Greece
- Center of Systems Biology, Biomedical Research Foundation of the Academy of Athens, 4 Soranou Ephessiou, 11527, Athens, Greece
- e-NIOS Applications Private Company, 17671, Kallithea, Greece
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27
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Microbotulinum: A Quantitative Evaluation of Aesthetic Skin Improvement in 62 Patients. Plast Reconstr Surg 2020; 146:987-994. [PMID: 33136941 DOI: 10.1097/prs.0000000000007248] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
BACKGROUND Microbotulinum refers to the systematic injection of tiny blebs of diluted botulinum toxin at repeated intervals into the skin. This targets the superficial fibers of the facial muscles, and weakens their insertion into the undersurface of the skin, which is responsible for the fine lines and wrinkles on the face. The authors present a pilot study based on quantitative evaluation, by means of a skin-scanning technology, of the aesthetic improvement of skin texture, microroughness, and enlarged pore size in a patient group treated with microbotulinum injections for cosmetic purposes. METHODS The treatment was performed using a 32-gauge needle to deliver injections on a regular 1-cm grid from the forehead to the cheek and down to the jawline. RESULTS Sixty of the 62 patients completed the study. All analyzed parameters improved significantly (p < 0.0001) at 90 days with respect to the pretreatment time point (skin texture, -1.93 ± 0.51; microroughness, -2.48 ± 0.79; and pore diameter, 2.1 ± 0.43). Best results have been obtained in patients aged between 42.7 and 46.8 years, and standard deviation calculation allows us to recommend it in patients aged between 36.5 and 53 years. CONCLUSIONS The results of this pilot study suggest that intradermal botulinum toxin injection, or so-called microbotulinum, is a safe and effective method to treat skin flaws. Because of the high satisfaction rate among both physicians and patients, further studies are indeed mandatory to determine the optimal number of units needed for a longer and lasting effect with this particular novel dilution. CLINICAL QUESTION/LEVEL OF EVIDENCE Therapeutic, IV.
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28
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Andrade C, Teixeira LF, Vasconcelos MJM, Rosado L. Data Augmentation Using Adversarial Image-to-Image Translation for the Segmentation of Mobile-Acquired Dermatological Images. J Imaging 2020; 7:2. [PMID: 34460573 PMCID: PMC8321267 DOI: 10.3390/jimaging7010002] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Revised: 12/04/2020] [Accepted: 12/16/2020] [Indexed: 11/18/2022] Open
Abstract
Dermoscopic images allow the detailed examination of subsurface characteristics of the skin, which led to creating several substantial databases of diverse skin lesions. However, the dermoscope is not an easily accessible tool in some regions. A less expensive alternative could be acquiring medium resolution clinical macroscopic images of skin lesions. However, the limited volume of macroscopic images available, especially mobile-acquired, hinders developing a clinical mobile-based deep learning approach. In this work, we present a technique to efficiently utilize the sizable number of dermoscopic images to improve the segmentation capacity of macroscopic skin lesion images. A Cycle-Consistent Adversarial Network is used to translate the image between the two distinct domains created by the different image acquisition devices. A visual inspection was performed on several databases for qualitative evaluation of the results, based on the disappearance and appearance of intrinsic dermoscopic and macroscopic features. Moreover, the Fréchet Inception Distance was used as a quantitative metric. The quantitative segmentation results are demonstrated on the available macroscopic segmentation databases, SMARTSKINS and Dermofit Image Library, yielding test set thresholded Jaccard Index of 85.13% and 74.30%. These results establish a new state-of-the-art performance in the SMARTSKINS database.
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Affiliation(s)
- Catarina Andrade
- Fraunhofer Portugal AICOS, Rua Alfredo Allen, 4200-135 Porto, Portugal; (M.J.M.V.); (L.R.)
| | - Luís F. Teixeira
- Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal;
- INESC TEC, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
| | | | - Luís Rosado
- Fraunhofer Portugal AICOS, Rua Alfredo Allen, 4200-135 Porto, Portugal; (M.J.M.V.); (L.R.)
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29
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Birkenfeld JS, Tucker-Schwartz JM, Soenksen LR, Avilés-Izquierdo JA, Marti-Fuster B. Computer-aided classification of suspicious pigmented lesions using wide-field images. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2020; 195:105631. [PMID: 32652382 DOI: 10.1016/j.cmpb.2020.105631] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2020] [Accepted: 06/21/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND AND OBJECTIVE Early identification of melanoma is conducted through whole-body visual examinations to detect suspicious pigmented lesions, a situation that fluctuates in accuracy depending on the experience and time of the examiner. Computer-aided diagnosis tools for skin lesions are typically trained using pre-selected single-lesion images, taken under controlled conditions, which limits their use in wide-field scenes. Here, we propose a computer-aided classifier system with such input conditions to aid in the rapid identification of suspicious pigmented lesions at the primary care level. METHODS 133 patients with a multitude of skin lesions were recruited for this study. All lesions were examined by a board-certified dermatologist and classified into "suspicious" and "non-suspicious". A new clinical database was acquired and created by taking Wide-Field images of all major body parts with a consumer-grade camera under natural illumination condition and with a consistent source of image variability. 3-8 images were acquired per patient on different sites of the body, and a total of 1759 pigmented lesions were extracted. A machine learning classifier was optimized and build into a computer aided classification system to binary classify each lesion using a suspiciousness score. RESULTS In a testing set, our computer-aided classification system achieved a sensitivity of 100% for suspicious pigmented lesions that were later confirmed by dermoscopy examination ("SPL_A") and 83.2% for suspicious pigmented lesions that were not confirmed after examination ("SPL_B"). Sensitivity for non-suspicious lesions was 72.1%, and accuracy was 75.9%. With these results we defined a suspiciousness score that is aligned with common macro-screening (naked eye) practices. CONCLUSIONS This work demonstrates that wide-field photography combined with computer-aided classification systems can distinguish suspicious from non-suspicious pigmented lesions, and might be effective to assess the severity of a suspicious pigmented lesions. We believe this approach could be useful to support skin screenings at a population-level.
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Affiliation(s)
- Judith S Birkenfeld
- Research Laboratory of Electronics, Massachusetts Institute of Technology, 77 Massachusetts Ave, Cambridge, MA 02139, USA; MIT linQ, Institute for Medical Engineering and Science, Massachusetts Institute of Technology, 77 Massachusetts Ave., Cambridge, MA 02139, USA; Brigham and Women's Hospital - Harvard Medical School, 75 Francis St, Boston, MA 02115, United States; Massachusetts General Hospital - Harvard Medical School, 55 Fruit St, Boston, MA 02114, United States.
| | - Jason M Tucker-Schwartz
- MIT linQ, Institute for Medical Engineering and Science, Massachusetts Institute of Technology, 77 Massachusetts Ave., Cambridge, MA 02139, USA
| | - Luis R Soenksen
- Research Laboratory of Electronics, Massachusetts Institute of Technology, 77 Massachusetts Ave, Cambridge, MA 02139, USA; MIT linQ, Institute for Medical Engineering and Science, Massachusetts Institute of Technology, 77 Massachusetts Ave., Cambridge, MA 02139, USA; Department of Mechanical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Ave, Cambridge, MA 02139, USA; Wyss Institute for Biologically Inspired Engineering, Harvard University, 3 Blackfan Cir, Boston, MA 02115, USA; Harvard-MIT Program in Health Sciences and Technology, Cambridge, MA 02139, USA
| | - José A Avilés-Izquierdo
- Department of Dermatology, Hospital General Universitario Gregorio Marañón, Calle del Dr. Esquerdo 46, 28007 Madrid, Spain
| | - Berta Marti-Fuster
- Research Laboratory of Electronics, Massachusetts Institute of Technology, 77 Massachusetts Ave, Cambridge, MA 02139, USA; MIT linQ, Institute for Medical Engineering and Science, Massachusetts Institute of Technology, 77 Massachusetts Ave., Cambridge, MA 02139, USA; Brigham and Women's Hospital - Harvard Medical School, 75 Francis St, Boston, MA 02115, United States
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Melanoma Diagnosis Using Deep Learning and Fuzzy Logic. Diagnostics (Basel) 2020; 10:diagnostics10080577. [PMID: 32784837 PMCID: PMC7459879 DOI: 10.3390/diagnostics10080577] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Revised: 07/31/2020] [Accepted: 08/02/2020] [Indexed: 01/06/2023] Open
Abstract
Melanoma or malignant melanoma is a type of skin cancer that develops when melanocyte cells, damaged by excessive exposure to harmful UV radiations, start to grow out of control. Though less common than some other kinds of skin cancers, it is more dangerous because it rapidly metastasizes if not diagnosed and treated at an early stage. The distinction between benign and melanocytic lesions could at times be perplexing, but the manifestations of the disease could fairly be distinguished by a skilled study of its histopathological and clinical features. In recent years, deep convolutional neural networks (DCNNs) have succeeded in achieving more encouraging results yet faster and computationally effective systems for detection of the fatal disease are the need of the hour. This paper presents a deep learning-based 'You Only Look Once (YOLO)' algorithm, which is based on the application of DCNNs to detect melanoma from dermoscopic and digital images and offer faster and more precise output as compared to conventional CNNs. In terms with the location of the identified object in the cell, this network predicts the bounding box of the detected object and the class confidence score. The highlight of the paper, however, lies in its infusion of certain resourceful concepts like two phase segmentation done by a combination of the graph theory using minimal spanning tree concept and L-type fuzzy number based approximations and mathematical extraction of the actual affected area of the lesion region during feature extraction process. Experimented on a total of 20250 images from three publicly accessible datasets-PH2, International Symposium on Biomedical Imaging (ISBI) 2017 and The International Skin Imaging Collaboration (ISIC) 2019, encouraging results have been obtained. It achieved a Jac score of 79.84% on ISIC 2019 dataset and 86.99% and 88.64% on ISBI 2017 and PH2 datasets, respectively. Upon comparison of the pre-defined parameters with recent works in this area yielded comparatively superior output in most cases.
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Tiwari K, Kumar S, Tiwari RK. Real-Time Mobile-Phone-Aided Melanoma Skin Lesion Detection Using Triangulation Technique. INTERNATIONAL JOURNAL OF E-HEALTH AND MEDICAL COMMUNICATIONS 2020. [DOI: 10.4018/ijehmc.2020070102] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Melanoma is a harmful disease among all types of skin cancer. Genetic factors and the exposure of UV rays causes melanoma skin lesions. Early diagnosis is important to identify malignant melanomas to improve the patient prognosis. A biopsy is a traditional method which is painful and invasive when used for skin cancer detection. This method requires laboratory testing which is not very efficient and time-consuming to detect skin lesions. To solve the above issue, a computer aided diagnosis (CAD) for skin lesion detection is needed. In this article, we have developed a mobile application with the capabilities to segment skin lesions in dermoscopy images using a triangulation method and categorize them into malignant or bengin lesions through a supervised method which is convolution neural network (CNN). This mobile application will make the skin cancer detection non-invasive which does not require any laboratory testing, making the detection less time consuming and inexpensive with a detection accuracy of 81%.
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Affiliation(s)
| | | | - R. K. Tiwari
- Department of Physics and Electronics, Dr. RML Avadh University, Faizabad, India
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32
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Yu Z, Jiang F, Zhou F, He X, Ni D, Chen S, Wang T, Lei B. Convolutional descriptors aggregation via cross-net for skin lesion recognition. Appl Soft Comput 2020. [DOI: 10.1016/j.asoc.2020.106281] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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33
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Grajdeanu IA, Vata D, Statescu L, Adriana Popescu I, Porumb-Andrese E, Ionela Patrascu A, Stincanu A, Taranu T, Crisan M, Gheuca Solovastru L. Use of imaging techniques for melanocytic naevi and basal cell carcinoma in integrative analysis (Review). Exp Ther Med 2020; 20:78-86. [PMID: 32508998 PMCID: PMC7271701 DOI: 10.3892/etm.2020.8620] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Accepted: 02/27/2020] [Indexed: 12/31/2022] Open
Abstract
Early detection of skin cancer is essential in order to obtain an improved prognosis. Clinicians need more objective and non-invasive examination methods to support their decision whether to biopsy or not tumoral lesions. These may include several imaging techniques such as dermoscopy, videodermoscopy, also known as sequential digital dermoscopy (SDD), computer-aided diagnosis (CAD), total body photography, imaging and high-frequency ultrasonography (HFUS), reflectance confocal microscopy, multiphoton tomography, electrical impedance spectroscopy, Raman spectroscopy, stepwise two-photon-laser spectroscopy and quantitative dynamic infrared. This review summarizes the current developments in the field of melanocytic lesions, such as naevi and basal cell carcinoma (BCC) imaging techniques. The aim was to collect and analyze data concerning types, indications, advantages and disadvantages of modern imaging techniques for in vivo skin tumor diagnosis. Two main methods were focused on, namely videodermoscopy and HFUS, which can be included in daily dermatologists' practice. In skin tumors HFUS allows the assessment of tumoral lesions with depth smaller than 1.5 cm, being described a correlation between ultrasonographic depth and the histologic index.
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Affiliation(s)
- Ioana-Alina Grajdeanu
- Department of Dermatology, 'Grigore T. Popa' University of Medicine and Pharmacy, Faculty of Medicine, 700115 Iasi, Romania
| | - Dan Vata
- Department of Dermatology, 'Grigore T. Popa' University of Medicine and Pharmacy, Faculty of Medicine, 700115 Iasi, Romania.,Clinic of Dermatology, Department of Dermatology, 'St. Spiridon' County Emergency Clinical Hospital, 700111 Iasi, Romania
| | - Laura Statescu
- Department of Dermatology, 'Grigore T. Popa' University of Medicine and Pharmacy, Faculty of Medicine, 700115 Iasi, Romania.,Clinic of Dermatology, Department of Dermatology, 'St. Spiridon' County Emergency Clinical Hospital, 700111 Iasi, Romania
| | - Ioana Adriana Popescu
- Department of Dermatology, 'Grigore T. Popa' University of Medicine and Pharmacy, Faculty of Medicine, 700115 Iasi, Romania.,Clinic of Dermatology, Department of Dermatology, 'St. Spiridon' County Emergency Clinical Hospital, 700111 Iasi, Romania
| | - Elena Porumb-Andrese
- Department of Dermatology, 'Grigore T. Popa' University of Medicine and Pharmacy, Faculty of Medicine, 700115 Iasi, Romania.,Clinic of Dermatology, Department of Dermatology, 'St. Spiridon' County Emergency Clinical Hospital, 700111 Iasi, Romania
| | - Adriana Ionela Patrascu
- Clinic of Dermatology, Department of Dermatology, 'St. Spiridon' County Emergency Clinical Hospital, 700111 Iasi, Romania
| | - Alina Stincanu
- Clinic of Dermatology, Department of Dermatology, 'St. Spiridon' County Emergency Clinical Hospital, 700111 Iasi, Romania
| | - Tatiana Taranu
- Department of Dermatology, 'Grigore T. Popa' University of Medicine and Pharmacy, Faculty of Dental Medicine, 700115 Iasi, Romania.,Clinic of Dermatology, Department of Dermatology, CF Iasi Hospital, 700506 Iasi, Romania
| | - Maria Crisan
- Department of Dermatology, 'Iuliu Hatieganu' University of Medicine and Pharmacy, 400000 Cluj-Napoca, Romania
| | - Laura Gheuca Solovastru
- Department of Dermatology, 'Grigore T. Popa' University of Medicine and Pharmacy, Faculty of Medicine, 700115 Iasi, Romania.,Clinic of Dermatology, Department of Dermatology, 'St. Spiridon' County Emergency Clinical Hospital, 700111 Iasi, Romania
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34
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Feature Selection of Non-Dermoscopic Skin Lesion Images for Nevus and Melanoma Classification. COMPUTATION 2020. [DOI: 10.3390/computation8020041] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
(1) Background: In this research, we aimed to identify and validate a set of relevant features to distinguish between benign nevi and melanoma lesions. (2) Methods: Two datasets with 70 melanomas and 100 nevi were investigated. The first one contained raw images. The second dataset contained images preprocessed for noise removal and uneven illumination reduction. Further, the images belonging to both datasets were segmented, followed by extracting features considered in terms of form/shape and color such as asymmetry, eccentricity, circularity, asymmetry of color distribution, quadrant asymmetry, fast Fourier transform (FFT) normalization amplitude, and 6th and 7th Hu’s moments. The FFT normalization amplitude is an atypical feature that is computed as a Fourier transform descriptor and focuses on geometric signatures of skin lesions using the frequency domain information. The receiver operating characteristic (ROC) curve and area under the curve (AUC) were employed to ascertain the relevance of the selected features and their capability to differentiate between nevi and melanoma. (3) Results: The ROC curves and AUC were employed for all experiments and selected features. A comparison in terms of the accuracy and AUC was performed, and an evaluation of the performance of the analyzed features was carried out. (4) Conclusions: The asymmetry index and eccentricity, together with F6 Hu’s invariant moment, were fairly competent in providing a good separation between malignant melanoma and benign lesions. Also, the FFT normalization amplitude feature should be exploited due to showing potential in classification.
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Hasan MK, Dahal L, Samarakoon PN, Tushar FI, Martí R. DSNet: Automatic dermoscopic skin lesion segmentation. Comput Biol Med 2020; 120:103738. [PMID: 32421644 DOI: 10.1016/j.compbiomed.2020.103738] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2020] [Revised: 03/27/2020] [Accepted: 03/27/2020] [Indexed: 02/08/2023]
Abstract
BACKGROUND AND OBJECTIVE Automatic segmentation of skin lesions is considered a crucial step in Computer-aided Diagnosis (CAD) systems for melanoma detection. Despite its significance, skin lesion segmentation remains an unsolved challenge due to their variability in color, texture, and shapes and indistinguishable boundaries. METHODS Through this study, we present a new and automatic semantic segmentation network for robust skin lesion segmentation named Dermoscopic Skin Network (DSNet). In order to reduce the number of parameters to make the network lightweight, we used a depth-wise separable convolution in lieu of standard convolution to project the learned discriminating features onto the pixel space at different stages of the encoder. Additionally, we implemented both a U-Net and a Fully Convolutional Network (FCN8s) to compare against the proposed DSNet. RESULTS We evaluate our proposed model on two publicly available datasets, namely ISIC-20171 and PH22. The obtained mean Intersection over Union (mIoU) is 77.5% and 87.0% respectively for ISIC-2017 and PH2 datasets which outperformed the ISIC-2017 challenge winner by 1.0% with respect to mIoU. Our proposed network also outperformed U-Net and FCN8s respectively by 3.6% and 6.8% with respect to mIoU on the ISIC-2017 dataset. CONCLUSION Our network for skin lesion segmentation outperforms the other methods discussed in the article and is able to provide better-segmented masks on two different test datasets which can lead to better performance in melanoma detection. Our trained model along with the source code and predicted masks are made publicly available3.
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Affiliation(s)
- Md Kamrul Hasan
- Computer Vision and Robotics Institute, University of Girona, Spain.
| | - Lavsen Dahal
- Computer Vision and Robotics Institute, University of Girona, Spain.
| | | | | | - Robert Martí
- Computer Vision and Robotics Institute, University of Girona, Spain.
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36
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Skin Lesion Segmentation from Dermoscopic Images Using Convolutional Neural Network. SENSORS 2020; 20:s20061601. [PMID: 32183041 PMCID: PMC7147706 DOI: 10.3390/s20061601] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Revised: 02/26/2020] [Accepted: 03/09/2020] [Indexed: 12/23/2022]
Abstract
Clinical treatment of skin lesion is primarily dependent on timely detection and delimitation of lesion boundaries for accurate cancerous region localization. Prevalence of skin cancer is on the higher side, especially that of melanoma, which is aggressive in nature due to its high metastasis rate. Therefore, timely diagnosis is critical for its treatment before the onset of malignancy. To address this problem, medical imaging is used for the analysis and segmentation of lesion boundaries from dermoscopic images. Various methods have been used, ranging from visual inspection to the textural analysis of the images. However, accuracy of these methods is low for proper clinical treatment because of the sensitivity involved in surgical procedures or drug application. This presents an opportunity to develop an automated model with good accuracy so that it may be used in a clinical setting. This paper proposes an automated method for segmenting lesion boundaries that combines two architectures, the U-Net and the ResNet, collectively called Res-Unet. Moreover, we also used image inpainting for hair removal, which improved the segmentation results significantly. We trained our model on the ISIC 2017 dataset and validated it on the ISIC 2017 test set as well as the PH2 dataset. Our proposed model attained a Jaccard Index of 0.772 on the ISIC 2017 test set and 0.854 on the PH2 dataset, which are comparable results to the current available state-of-the-art techniques.
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37
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Mabrouk MS, Sayed AY, Afifi HM, Sheha MA, Sharwy A. Fully Automated Approach for Early Detection of Pigmented Skin Lesion Diagnosis Using ABCD. JOURNAL OF HEALTHCARE INFORMATICS RESEARCH 2020; 4:151-173. [DOI: 10.1007/s41666-020-00067-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Revised: 11/20/2019] [Accepted: 01/10/2020] [Indexed: 10/24/2022]
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38
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Moradi N, Mahdavi-Amiri N. Kernel sparse representation based model for skin lesions segmentation and classification. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2019; 182:105038. [PMID: 31437709 DOI: 10.1016/j.cmpb.2019.105038] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2019] [Revised: 08/12/2019] [Accepted: 08/15/2019] [Indexed: 06/10/2023]
Abstract
BACKGROUND AND OBJECTIVES Melanoma is a dangerous kind of skin disease with a high death rate, and its prevalence has increased rapidly in recent years. Diagnosis of melanoma in a primary phase can be helpful for its cure. Due to costs for dermatology, we need an automatic system to diagnose melanoma through lesion images. METHODS Here, we propose a sparse representation based method for segmentation and classification of lesion images. The main idea of our framework is based on a kernel sparse representation, which produces discriminative sparse codes to represent features in a high-dimensional feature space. Our novel formulation for discriminative kernel sparse coding jointly learns a kernel-based dictionary and a linear classifier. We also present an adaptive K-SVD algorithm for kernel dictionary and classifier learning. RESULTS We test our approach for both segmentation and classification tasks. The evaluation results on both dermoscopic and digital datasets demonstrate our approach to be competitive as compared to the available state-of-the-art methods, with the advantage of not needing any pre-processing. CONCLUSIONS Our method is insensitive to noise and image conditions and can be used effectively for challenging skin lesions. Our approach is so extensive to be adapted to various medical image segmentations.
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Affiliation(s)
- Nooshin Moradi
- Faculty of Mathematical Sciences, Sharif University of Technology, Tehran, Iran.
| | - Nezam Mahdavi-Amiri
- Faculty of Mathematical Sciences, Sharif University of Technology, Tehran, Iran.
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39
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Talavera-Martínez L, Bibiloni P, González-Hidalgo M. Computational texture features of dermoscopic images and their link to the descriptive terminology: A survey. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2019; 182:105049. [PMID: 31494412 DOI: 10.1016/j.cmpb.2019.105049] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2019] [Revised: 08/12/2019] [Accepted: 08/23/2019] [Indexed: 06/10/2023]
Abstract
Computer-extracted texture features are relevant to diagnose cutaneous lesions such as melanomas. Our goal is to set a relationship between a well-established descriptive terminology, which describes the attributes of dermoscopic structures based on their aspect rather than their underlying causes, and the computational methods to extract texture-based features. By tackling this problem, we can ascertain what indicators used by dermatologists are reflected in the extracted texture features. We first review the state-of-the-art models for texture extraction in dermoscopic images. By comparing the methods' performance and goals, we conclude that (I) a single color space does not seem to give performances as good as using several ones, thus the latter is reasonable (II) the optimal number of extracted features seems to vary depending on the method's goal, and extracting a large number of features can lead to a loss of models robustness (III) methods such as GLCM, Sobel or Law energy filters are mainly used to capture local properties to detect specific dermoscopic structures (IV) methods that extract local and global features, like Gabor wavelets or SPT, tend to be used to analyze the presence of certain patterns of dermoscopic structures, e.g. globular, reticular, etc.
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Affiliation(s)
- Lidia Talavera-Martínez
- Universitat de les Illes Balears, SCOPIA Research Group, Palma 07122, Spain; Balearic Islands Health Research Institute (IdISBa), Palma 07010, Spain.
| | - Pedro Bibiloni
- Universitat de les Illes Balears, SCOPIA Research Group, Palma 07122, Spain; Balearic Islands Health Research Institute (IdISBa), Palma 07010, Spain.
| | - Manuel González-Hidalgo
- Universitat de les Illes Balears, SCOPIA Research Group, Palma 07122, Spain; Balearic Islands Health Research Institute (IdISBa), Palma 07010, Spain.
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40
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Garza-Flores E, Guerra-Rosas E, Álvarez-Borrego J. Spectral indexes obtained by implementation of the fractional Fourier and Hermite transform for the diagnosis of malignant melanoma. BIOMEDICAL OPTICS EXPRESS 2019; 10:6043-6056. [PMID: 31853384 PMCID: PMC6913402 DOI: 10.1364/boe.10.006043] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Revised: 10/22/2019] [Accepted: 10/23/2019] [Indexed: 06/10/2023]
Abstract
Many people suffer from different skin diseases, which can be diverse and varied. Most skin diseases cause disorders in the skin, such as changes in color, texture, and appearance manifesting in spots, swelling, scaling, ulcers, etc. One of the diseases that represents a serious health problem is skin cancer. The most dangerous skin cancer is malignant melanoma, which can cause death if not detected early. Therefore, development of new and accurate diagnosis methodologies to increase the chance of early detection is important. In this work, an analysis to discriminate between malignant melanoma and three types of benign skin lesions-melanocytic nevus, dermatofibroma, and seborrheic keratosis-is realized by calculating spectral indexes based on the real and imaginary parts of a fractional nonlinear filter obtained by affecting the modulus of the fractional Fourier transform by an exponent k . The fractional spectral indexes were calculated by working with selected sub-images obtained by dividing the input image. Also, a variation was implemented when the Hermite transform is used to calculate the fractional nonlinear filter. Discrimination between malignant melanoma and benign skin lesions was achieved with a 99.7% confidence level.
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Affiliation(s)
- Esbanyely Garza-Flores
- SolexVintel, Camino Real de Tetelpan No.
180, Colonia Tetelpan, Alcaldía Álvaro Obregón,
Ciudad de México, C. P. 01790, Mexico
| | - Esperanza Guerra-Rosas
- CETYS University, Camino a Microondas
Trinidad s/n. Km. 1, Moderna Oeste, 22860, Ensenada, B. C., Mexico
- CICESE, División de Física
Aplicada, Departamento de Óptica, Carretera Ensenada-Tijuana,
No. 3918, Fraccionamiento Zona Playitas, Ensenada, B.C., C.P. 22860,
Mexico
| | - Josué Álvarez-Borrego
- CICESE, División de Física
Aplicada, Departamento de Óptica, Carretera Ensenada-Tijuana,
No. 3918, Fraccionamiento Zona Playitas, Ensenada, B.C., C.P. 22860,
Mexico
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41
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Dense pooling layers in fully convolutional network for skin lesion segmentation. Comput Med Imaging Graph 2019; 78:101658. [PMID: 31634739 DOI: 10.1016/j.compmedimag.2019.101658] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2018] [Revised: 09/06/2019] [Accepted: 09/09/2019] [Indexed: 12/12/2022]
Abstract
One of the essential tasks in medical image analysis is segmentation and accurate detection of borders. Lesion segmentation in skin images is an essential step in the computerized detection of skin cancer. However, many of the state-of-the-art segmentation methods have deficiencies in their border detection phase. In this paper, a new class of fully convolutional network is proposed, with new dense pooling layers for segmentation of lesion regions in skin images. This network leads to highly accurate segmentation of lesions on skin lesion datasets, which outperforms state-of-the-art algorithms in the skin lesion segmentation.
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42
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Attia M, Hossny M, Zhou H, Nahavandi S, Asadi H, Yazdabadi A. Digital hair segmentation using hybrid convolutional and recurrent neural networks architecture. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2019; 177:17-30. [PMID: 31319945 DOI: 10.1016/j.cmpb.2019.05.010] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2019] [Revised: 04/17/2019] [Accepted: 05/13/2019] [Indexed: 06/10/2023]
Abstract
BACKGROUND AND OBJECTIVE Skin melanoma is one of the major health problems in many countries. Dermatologists usually diagnose melanoma by visual inspection of moles. Digital hair removal can provide a non-invasive way to remove hair and hair-like regions as a pre-processing step for skin lesion images. Hair removal has two main steps: hair segmentation and hair gaps inpainting. However, hair segmentation is a challenging task which requires manual tuning of thresholding parameters. Hard-coded threshold leads to over-segmentation (false positives) which in return changes the textural integrity of lesions and or under-segmentation (false negatives) which leaves hair traces and artefacts which affect subsequent diagnosis. Additionally, dermal hair exhibits different characteristics: thin; overlapping; faded; occluded and overlaid on textured lesions. METHODS In this presented paper, we proposed a deep learning approach based on a hybrid network of convolutional and recurrent layers for hair segmentation using weakly labelled data. We utilised the deep encoded features for accurate detection and delineation of hair in skin images. The encoded features are then fed into recurrent neural network layers to encode the spatial dependencies between disjointed patches. Experiments are conducted on a publicly available dataset, called "Towards Melanoma Detection: Challenge". We chose two metrics to evaluate the produced segmentation masks. The first metric is the Jaccard Index which penalises false positives and false negatives. The second metric is the tumour disturb pattern which assesses the overall effect over the lesion texture due to unnecessary inpainting as a result of over segmentation. The qualitative and quantitative evaluations are employed to compare the proposed technique with state-of-the-art methods. RESULTS The proposed approach showed superior segmentation accuracy as demonstrated by a Jaccard Index of 77.8% in comparison to a 66.5% reported by the state-of-the-art method. We also achieved tumour disturb pattern as low as 14% compared to 23% for the state-of-the-art method. CONCLUSION The hybrid architecture for segmentation was able to accurately delineate and segment the hair from the background including lesions and the skin using weakly labelled ground truth for training.
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Affiliation(s)
- Mohamed Attia
- Institute for Intelligent Systems Research and Innovation, Deakin University, Australia.
| | - Mohammed Hossny
- Institute for Intelligent Systems Research and Innovation, Deakin University, Australia.
| | - Hailing Zhou
- Institute for Intelligent Systems Research and Innovation, Deakin University, Australia.
| | - Saeid Nahavandi
- Institute for Intelligent Systems Research and Innovation, Deakin University, Australia.
| | - Hamed Asadi
- School of Medicine, Melbourne University, Australia.
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43
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Region Extraction and Classification of Skin Cancer: A Heterogeneous framework of Deep CNN Features Fusion and Reduction. J Med Syst 2019; 43:289. [DOI: 10.1007/s10916-019-1413-3] [Citation(s) in RCA: 68] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Accepted: 07/03/2019] [Indexed: 01/12/2023]
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44
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Ünver HM, Ayan E. Skin Lesion Segmentation in Dermoscopic Images with Combination of YOLO and GrabCut Algorithm. Diagnostics (Basel) 2019; 9:E72. [PMID: 31295856 PMCID: PMC6787581 DOI: 10.3390/diagnostics9030072] [Citation(s) in RCA: 67] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Revised: 06/26/2019] [Accepted: 07/08/2019] [Indexed: 01/22/2023] Open
Abstract
Skin lesion segmentation has a critical role in the early and accurate diagnosis of skin cancer by computerized systems. However, automatic segmentation of skin lesions in dermoscopic images is a challenging task owing to difficulties including artifacts (hairs, gel bubbles, ruler markers), indistinct boundaries, low contrast and varying sizes and shapes of the lesion images. This paper proposes a novel and effective pipeline for skin lesion segmentation in dermoscopic images combining a deep convolutional neural network named as You Only Look Once (YOLO) and the GrabCut algorithm. This method performs lesion segmentation using a dermoscopic image in four steps: 1. Removal of hairs on the lesion, 2. Detection of the lesion location, 3. Segmentation of the lesion area from the background, 4. Post-processing with morphological operators. The method was evaluated on two publicly well-known datasets, that is the PH2 and the ISBI 2017 (Skin Lesion Analysis Towards Melanoma Detection Challenge Dataset). The proposed pipeline model has achieved a 90% sensitivity rate on the ISBI 2017 dataset, outperforming other deep learning-based methods. The method also obtained close results according to the results obtained from other methods in the literature in terms of metrics of accuracy, specificity, Dice coefficient, and Jaccard index.
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Affiliation(s)
- Halil Murat Ünver
- Department of Computer Engineering, Kırıkkale University, 71451 Kırıkkale, Turkey
| | - Enes Ayan
- Department of Computer Engineering, Kırıkkale University, 71451 Kırıkkale, Turkey.
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45
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Saleem A, Bhatti N, Ashraf A, Zia M, Mahmood H. Segmentation and classification of consumer-grade and dermoscopic skin cancer images using hybrid textural analysis. J Med Imaging (Bellingham) 2019; 6:034501. [PMID: 31404402 PMCID: PMC6683676 DOI: 10.1117/1.jmi.6.3.034501] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Accepted: 07/09/2019] [Indexed: 10/14/2023] Open
Abstract
We present a skin lesion diagnosis system that segments the lesion and classifies it as melanoma or nonmelanoma. The proposed system is capable to deal with skin lesion images acquired by standard consumer-grade cameras and dermascopes. In order to suppress the image artifacts and enhance the lesion area, we propose an illumination correction strategy which consists of filtering in frequency and spatial domains. We introduce a hybrid model for lesion segmentation, which forms texture segments of the illumination corrected image using a factorization technique. Then based on the texture distinctiveness of the corrected and the texture segmented images, the saliency maps are computed, which are combined to decide lesion texture segments. In order to classify the segmented lesion, we propose a multimodal feature set composed of texture-, shape-, and color-based features. Classification performance of the multimodal features is evaluated using support vector machine, decision trees, and Mahalanobis distance classifiers. We evaluate the performance of the proposed system qualitatively and quantitatively. For the consumer-grade camera skin images dataset and ISIC 2017 dermascopic images dataset, the average segmentation accuracies are 98.4% and 95.4%, respectively; the classification accuracies are 98.06% and 93.95%, respectively.
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Affiliation(s)
- Afsah Saleem
- Quaid-i-Azam University, Department of Electronics, Islamabad, Pakistan
| | - Naeem Bhatti
- Quaid-i-Azam University, Department of Electronics, Islamabad, Pakistan
| | - Aqueel Ashraf
- Quaid-i-Azam University, Department of Electronics, Islamabad, Pakistan
| | - Muhammad Zia
- Quaid-i-Azam University, Department of Electronics, Islamabad, Pakistan
| | - Hasan Mahmood
- Quaid-i-Azam University, Department of Electronics, Islamabad, Pakistan
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46
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Abstract
Among the different types of skin cancer, melanoma is considered to be the deadliest and is difficult to treat at advanced stages. Detection of melanoma at earlier stages can lead to reduced mortality rates. Desktop-based computer-aided systems have been developed to assist dermatologists with early diagnosis. However, there is significant interest in developing portable, at-home melanoma diagnostic systems which can assess the risk of cancerous skin lesions. Here, we present a smartphone application that combines image capture capabilities with preprocessing and segmentation to extract the Asymmetry, Border irregularity, Color variegation, and Diameter (ABCD) features of a skin lesion. Using the feature sets, classification of malignancy is achieved through support vector machine classifiers. By using adaptive algorithms in the individual data-processing stages, our approach is made computationally light, user friendly, and reliable in discriminating melanoma cases from benign ones. Images of skin lesions are either captured with the smartphone camera or imported from public datasets. The entire process from image capture to classification runs on an Android smartphone equipped with a detachable 10x lens, and processes an image in less than a second. The overall performance metrics are evaluated on a public database of 200 images with Synthetic Minority Over-sampling Technique (SMOTE) (80% sensitivity, 90% specificity, 88% accuracy, and 0.85 area under curve (AUC)) and without SMOTE (55% sensitivity, 95% specificity, 90% accuracy, and 0.75 AUC). The evaluated performance metrics and computation times are comparable or better than previous methods. This all-inclusive smartphone application is designed to be easy-to-download and easy-to-navigate for the end user, which is imperative for the eventual democratization of such medical diagnostic systems.
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47
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Sreelatha T, Subramanyam MV, Prasad MNG. Early Detection of Skin Cancer Using Melanoma Segmentation technique. J Med Syst 2019; 43:190. [PMID: 31111236 DOI: 10.1007/s10916-019-1334-1] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Revised: 05/07/2019] [Accepted: 05/10/2019] [Indexed: 10/26/2022]
Abstract
The significance of pattern recognition techniques is widely enhanced in image processing and medical applications. Thus, lesion segmentation method is an essential technique of pattern recognition algorithms to detect the melanoma skin cancer in patients at earliest stage, otherwise, in further stages it becomes one of the deadliest disease and its mortality rate is very high. Therefore, a precise melanoma segmentation technique is introduced based on the Gradient and Feature Adaptive Contour (GFAC) model to detect melanoma skin cancer in earliest stage and diagnosis of dermoscopic images. In the proposed image segmentation technique pre-processing and noise elimination techniques are introduced to decrease noise and make execution faster. This technique helps in separating the required entity from the background and gather the information from the adjacent pixels of similar classes. Multiple Gaussian distributed patterns are adopted to extract efficient features and to get precise segmentation. The proposed GFACmodel is noise free and consist of smoother border. The segmentation model efficiency is tested on PH2 dataset. The superiority of the proposed modified gradient and feature adaptive contour model can be verified against various state-of-art-techniques in terms of segmented image, error reduction and efficient feature extraction.
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Affiliation(s)
- Tammineni Sreelatha
- Department of Electronics and Communication Engineering, Jawaharlal Nehru Technological University Ananthapuramu, Ananthapuramu, Andhra Pradesh, India.
| | - M V Subramanyam
- Department of Electronics and Communication Engineering, Santhiram Engineering College, Nandyal, Andhra Pradesh, India
| | - M N Giri Prasad
- Department of Electronics and Communication Engineering, Jawaharlal Nehru Technological University Ananthapuramu, Ananthapuramu, Andhra Pradesh, India
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48
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Barata C, Celebi ME, Marques JS. A Survey of Feature Extraction in Dermoscopy Image Analysis of Skin Cancer. IEEE J Biomed Health Inform 2019; 23:1096-1109. [DOI: 10.1109/jbhi.2018.2845939] [Citation(s) in RCA: 81] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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49
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Ghiasi MM, Zendehboudi S. Decision tree-based methodology to select a proper approach for wart treatment. Comput Biol Med 2019; 108:400-409. [DOI: 10.1016/j.compbiomed.2019.04.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2019] [Revised: 04/01/2019] [Accepted: 04/01/2019] [Indexed: 01/04/2023]
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50
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Johansen TH, Møllersen K, Ortega S, Fabelo H, Garcia A, Callico GM, Godtliebsen F. Recent advances in hyperspectral imaging for melanoma detection. WIRES COMPUTATIONAL STATISTICS 2019. [DOI: 10.1002/wics.1465] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
| | - Kajsa Møllersen
- Department of Community Medicine UiT The Arctic University of Norway Tromsø Norway
| | - Samuel Ortega
- Institute for Applied Microelectronics University of Las Palmas de Gran Canaria Las Palmas Spain
| | - Himar Fabelo
- Institute for Applied Microelectronics University of Las Palmas de Gran Canaria Las Palmas Spain
| | - Aday Garcia
- Institute for Applied Microelectronics University of Las Palmas de Gran Canaria Las Palmas Spain
| | - Gustavo M. Callico
- Institute for Applied Microelectronics University of Las Palmas de Gran Canaria Las Palmas Spain
| | - Fred Godtliebsen
- Department of Mathematics and Statistics UiT The Arctic University of Norway Tromsø Norway
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