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Chen C, Zhang H, Lin Y, Lu M, Liao Q, Zhang S, Chen W, Zheng X, Li Y, Ding R, Wan Z. Identification of potential therapeutic drugs targeting core genes for systemic lupus erythematosus (SLE) and coexisting COVID-19: Insights from bioinformatic analyses. Immun Inflamm Dis 2023; 11:e1087. [PMID: 38018597 PMCID: PMC10659756 DOI: 10.1002/iid3.1087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 10/24/2023] [Accepted: 11/02/2023] [Indexed: 11/30/2023] Open
Abstract
OBJECTIVE Systemic lupus erythematosus (SLE) patients are at risk during the COVID-19 pandemic, yet the underlying molecular mechanisms remain incompletely understood. This study sought to analyze the potential molecular connections between COVID-19 and SLE, employing a bioinformatics approach to identify effective drugs for both conditions. METHODS The data sets GSE100163 and GSE183071 were utilized to determine share differentially expressed genes (DEGs). These DEGs were later analyzed by various bioinformatic methods, including functional enrichment, protein-protein interaction (PPI) network analysis, regulatory network construction, and gene-drug interaction construction. RESULTS A total of 50 common DEGs were found between COVID-19 and SLE. Gene ontology (GO) functional annotation revealed that "immune response," "innate immune response," "plasma membrane," and "protein binding" were most enriched in. Additionally, the pathways that were enriched include "Th1 and Th2 cell differentiation." The study identified 48 genes/nodes enriched with 292 edges in the PPI network, of which the top 10 hub genes were CD4, IL7R, CD3E, CD5, CD247, KLRB1, CD40LG, CD7, CR2, and GZMK. Furthermore, the study found 48 transcription factors and 8 microRNAs regulating these hub genes. Finally, four drugs namely ibalizumab (targeted to CD4), blinatumomab (targeted to CD3E), muromonab-CD3 (targeted to CD3E), and catumaxomab (targeted to CD3E) were found in gene-drug interaction. CONCLUSION Four possible drugs that targeted two specific genes, which may be beneficial for COVID-19 patients with SLE.
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Affiliation(s)
- Chao Chen
- School of Medicine, Institute of GenomicsHuaqiao UniversityXiamenChina
| | - Hongjian Zhang
- Department of Oncology and Vascular Interventional RadiologyZhongshan Hospital Xiamen University, School of Medicine, Xiamen UniversityXiamenFujianChina
| | - Yanbin Lin
- Department of Oncology and Vascular Interventional RadiologyZhongshan Hospital Xiamen University, School of Medicine, Xiamen UniversityXiamenFujianChina
| | - Meiqi Lu
- Department of Oncology and Vascular Interventional RadiologyZhongshan Hospital Xiamen University, School of Medicine, Xiamen UniversityXiamenFujianChina
| | - Quan Liao
- Department of Oncology and Vascular Interventional RadiologyZhongshan Hospital Xiamen University, School of Medicine, Xiamen UniversityXiamenFujianChina
| | - Shichao Zhang
- Department of Oncology and Vascular Interventional RadiologyZhongshan Hospital Xiamen University, School of Medicine, Xiamen UniversityXiamenFujianChina
| | - Weibin Chen
- Department of Oncology and Vascular Interventional RadiologyZhongshan Hospital Xiamen University, School of Medicine, Xiamen UniversityXiamenFujianChina
| | - Xiongwei Zheng
- Department of Oncology and Vascular Interventional RadiologyZhongshan Hospital Xiamen University, School of Medicine, Xiamen UniversityXiamenFujianChina
| | - Yunpeng Li
- Department of Oncology and Vascular Interventional RadiologyZhongshan Hospital Xiamen University, School of Medicine, Xiamen UniversityXiamenFujianChina
| | - Rui Ding
- Department of Oncology and Vascular Interventional RadiologyZhongshan Hospital Xiamen University, School of Medicine, Xiamen UniversityXiamenFujianChina
| | - Zheng Wan
- Department of Oncology and Vascular Interventional RadiologyZhongshan Hospital Xiamen University, School of Medicine, Xiamen UniversityXiamenFujianChina
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Chabert P, Danjou W, Mezidi M, Berthiller J, Bestion A, Fred AA, Guerin C, Argaud L, Piriou V, Bonnefoy-Cudraz E, Lehot JJ, Fellahi JL, Rimmele T, Aubrun F, Richard JC, Gallay L, Hot A. Short- and long-term prognosis of acute critically ill patients with systemic rheumatic diseases: A retrospective multicentre study. Medicine (Baltimore) 2021; 100:e26164. [PMID: 34477112 PMCID: PMC8415942 DOI: 10.1097/md.0000000000026164] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/26/2020] [Accepted: 05/06/2021] [Indexed: 01/05/2023] Open
Abstract
Patients with systemic rheumatic disease (SRD) share the risks of multi-organ flare-up, cardiovascular diseases, and immunosuppression. Such situations can lead to an acute critical illness. The present study describes the clinical features of SRD patients admitted to the intensive care unit (ICU) and their short- and long- term mortality.We performed a multicentre retrospective study in 10 French ICU in Lyon, France. Inclusion criteria were SRD diagnosis and admission for an acute organ failure. The primary endpoint was ICU mortality.A total of 271 patients were included. SRD included systemic lupus erythematosus (23.2% of included patients), vasculitis (10.7%), systemic sclerosis (10.7%), idiopathic inflammatory myopathy (6.3%), and other connective tissue disorders (rheumatoid arthritis, Sjögren and Sharp syndromes; 50.9%). Initial organ failure(s) were shock (43.5% of included patients), acute kidney injury (30.5%), and acute respiratory failure (23.2%). The cause(s) of ICU admission included sepsis (61.6%), cardiovascular events (33.9%), SRD-flare up (32.8%), and decompensations related to comorbidities (28%). The ICU mortality reached 14.3%. The factors associated with ICU mortality were chronic cardiac failure, invasive ventilation and admission in ICU for another reason than sepsis or SRD flare-up. The median follow-up after ICU discharge was 33.6 months. During follow-up, 109 patients died. The factors associated with long-term mortality included age, Charlson comorbidity index, and ICU admission for sepsis or SRD flare-up.The ICU mortality of patients with SRD was low. Sepsis was the first cause of admission. Cardiovascular events and comorbidities negatively impacted ICU mortality. Admission for sepsis or SRD flare-up exerted a negative effect on the long-term outcome.
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Affiliation(s)
- Paul Chabert
- Hospices Civils de Lyon, Médecine Intensive - Réanimation, Hôpital de la Croix Rousse, Lyon, France
| | - William Danjou
- Hospices Civils de Lyon, Médecine Intensive - Réanimation, Hôpital de la Croix Rousse, Lyon, France
| | - Mehdi Mezidi
- Hospices Civils de Lyon, Médecine Intensive - Réanimation, Hôpital de la Croix Rousse, Lyon, France
| | | | - Audrey Bestion
- Hospices Civils de Lyon, Département Information Médicale, France
| | - Abla-Akpene Fred
- Hospices Civils de Lyon, Département Information Médicale, France
| | - Claude Guerin
- Hospices Civils de Lyon, Médecine Intensive - Réanimation, Hôpital de la Croix Rousse, Lyon, France
- Université de Lyon, France
- Hospices Civils de Lyon, Médecine Intensive - Réanimation, Hôpital Edouard Herriot, Lyon, France
- Institut Mondor de Recherche Biomédicale INSERM 955, ERL CNRS, 7000 Créteil, France
| | - Laurent Argaud
- Hospices Civils de Lyon, Médecine Intensive - Réanimation, Hôpital Edouard Herriot, Lyon, France
| | - Vincent Piriou
- Université de Lyon, France
- Hospices Civils de Lyon, Anesthésie-Réanimation-Médecine Intensive, Centre Hospitalier Lyon Sud, Pierre-Bénite, France
| | - Eric Bonnefoy-Cudraz
- Hospices Civils de Lyon, Service d’urgences cardiologiques et de soins intensifs de cardiologie, Hôpital Louis Pradel, Bron, France
| | - Jean-Jacques Lehot
- Hospices Civils de Lyon, Anesthésie-Réanimation Neurologique, Hôpital Pierre Wertheimer, Bron, France
| | - Jean-Luc Fellahi
- Hospices Civils de Lyon, Anesthésie-Réanimation cardio-thoracique et vasculaire, Hôpital Louis Pradel, Bron, France
| | - Thomas Rimmele
- Hospices Civils de Lyon, Anesthésie-Réanimation, Hôpital Edouard Herriot, Lyon, France
| | - Frederic Aubrun
- Hospices Civils de Lyon, Anesthésie-Réanimation, Hôpital de la croix rousse, Lyon, France
| | - Jean-Christophe Richard
- Hospices Civils de Lyon, Médecine Intensive - Réanimation, Hôpital de la Croix Rousse, Lyon, France
- Université de Lyon, France
| | - Laure Gallay
- Université de Lyon, France
- Hospices Civils de Lyon, Médecine Interne, Hôpital Edouard Herriot, Lyon, France
| | - Arnaud Hot
- Université de Lyon, France
- Hospices Civils de Lyon, Médecine Interne, Hôpital Edouard Herriot, Lyon, France
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da Rosa GP, Cervera R, Espinosa G. Causes of Hospitalization in Systemic Lupus Erythematosus: A Narrative Review. Curr Rheumatol Rev 2020; 17:29-40. [PMID: 32718295 DOI: 10.2174/1573397116666200727145818] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2020] [Revised: 05/22/2020] [Accepted: 06/26/2020] [Indexed: 11/22/2022]
Abstract
Hospitalizations are frequent in Systemic Lupus Erythematosus (SLE) and carry a significant economic burden. The focus of this review was to summarize the information available on the main causes of SLE hospitalizations over recent decades. A literature review was conducted, using PubMed and Scopus, for articles related to SLE hospital admissions from 1981 onward. Active disease/ flare and infection were the leading causes of admission across the study period. More recently, other comorbidities gained relevance, such as cardio and cerebrovascular disease, pregnancy-related morbidity, adverse drug reactions, thromboembolic events, malignancy and renal, pulmonary and gastrointestinal disease. African and Southeast Asian studies seemed to display particularly high percentages of patients admitted with active disease/flare, while European and North American studies appeared to report more admissions due to comorbidities and accumulated disease/treatment damage. Some data support a temporal change of certain admission causes, but the limited number, heterogeneity and variance among studies weakens a consistent analysis. In conclusion, despite the developments in SLE management, causes of hospitalization have not prominently changed across recent decades.
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Affiliation(s)
- Gilberto Pires da Rosa
- Department of Autoimmune Diseases, Hospital Clínic, Institut d'Investigacions Biomediques August Pi I Sunyer (IDIBAPS), University of Barcelona, Barcelona, Catalonia, Spain
| | - Ricard Cervera
- Department of Autoimmune Diseases, Hospital Clínic, Institut d'Investigacions Biomediques August Pi I Sunyer (IDIBAPS), University of Barcelona, Barcelona, Catalonia, Spain
| | - Gerard Espinosa
- Department of Autoimmune Diseases, Hospital Clínic, Institut d'Investigacions Biomediques August Pi I Sunyer (IDIBAPS), University of Barcelona, Barcelona, Catalonia, Spain
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Levy O, Markov A, Drob Y, Maslakov I, Tishler M, Amit-Vazina M. All-cause hospitalizations in systemic lupus erythematosus from a single medical center in Israel. Rheumatol Int 2018; 38:1841-1846. [PMID: 30151719 DOI: 10.1007/s00296-018-4147-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2018] [Accepted: 08/23/2018] [Indexed: 11/29/2022]
Abstract
OBJECTIVE Clinical features of systemic lupus erythematosus (SLE) have been described from different geographical regions in the world. The aim of this study was to obtain local and contemporary data on all-cause hospitalizations of SLE patients in an Israeli Medical Center. METHODS This is a retrospective observational single-center study. Revision of medical records of hospitalized lupus patients during 5-year period (January 2012-December 2016) was performed. RESULTS A total of 61 lupus patients and 138 hospitalizations were identified. Female-to-male ratio was 9:1. Average age was 42.5 years. Average disease duration was 14.58 years. Mean SLICC/ACR damage index was 0.75. The majority of patients were treated with lupus medications (47, 77%). The most common lupus medications were hydroxychloroquine (40, 65.5%), prednisone (25, 40.9%), and azathioprine (9, 14.75%). The most common reasons for hospitalization were disease flare (28, 20.3%), pregnancy and labor (26, 18.9%), and infection (19, 13.8%). The average length of hospitalization for all patients was 6.65 days. No fetal morbidity was recorded, and there was one event of maternal morbidity. There were no cases of acute coronary events. There were six ICU admissions (4.35%). Two admissions (1.45%) were complicated by hospital-acquired infection. Three patients died (2.17%) during hospital stay. CONCLUSIONS This survey from a single Israeli medical center revealed low rates of pregnancy complications, coronary events, and nosocomial infections in hospitalized lupus patients. Further studies are required to determine whether these findings reflect local disease expression or it may remark global trend of decrease in lupus complications.
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Affiliation(s)
- Ofer Levy
- Internal Medicine B, Rheumatology Unit, Assaf Harofeh Medical Center, Be'er Ya'akov, Israel. .,Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel.
| | - Andrey Markov
- Internal Medicine B, Rheumatology Unit, Assaf Harofeh Medical Center, Be'er Ya'akov, Israel
| | - Yulia Drob
- Internal Medicine B, Rheumatology Unit, Assaf Harofeh Medical Center, Be'er Ya'akov, Israel
| | - Ilia Maslakov
- Internal Medicine B, Rheumatology Unit, Assaf Harofeh Medical Center, Be'er Ya'akov, Israel
| | - Moshe Tishler
- Internal Medicine B, Rheumatology Unit, Assaf Harofeh Medical Center, Be'er Ya'akov, Israel.,Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel
| | - Mirit Amit-Vazina
- Internal Medicine B, Rheumatology Unit, Assaf Harofeh Medical Center, Be'er Ya'akov, Israel.,Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel
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Busch RW, Kay SD, Voss A. Hospitalizations among Danish SLE patients: a prospective study on incidence, causes of admission and risk factors in a population-based cohort. Lupus 2017; 27:165-171. [PMID: 29050537 DOI: 10.1177/0961203317734919] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Objective To determine the incidence, duration and cause of hospitalization in a cohort of Danish patients with systemic lupus erythematosus (SLE). In addition, we investigated risk factors for admission and prolonged hospital stay. Methods A total of 155 SLE patients from a population-based cohort were included in the study during a period of 70 months, from January 2007 to October 2012. Data on frequency, cause and duration of hospitalizations were obtained by review of medical charts. Data on disease manifestations, organ damage and treatment were collected prospectively. Results A total of 101 of the 155 SLE patients (65%) had one or more hospitalization during the study period. The incidence rate of all hospitalizations was 0.50 per year. Leading causes of admission were complications to SLE or its treatment, but infections were also common. Mean duration of hospital stay was 6.4 ± 10.5 days, and SLE Disease Activity Index 2000 (SLEDAI-2K) on admission emerged as a risk factor for prolonged hospital stay. Conclusion Danish SLE patients experience frequent admissions to hospital. Complications to SLE or its treatment, as well as infections, are leading causes of admission. High SLEDAI-2K on admission is a risk factor for prolonged hospital stay.
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Affiliation(s)
- R W Busch
- Department of Rheumatology, Odense University Hospital, Denmark
| | - S D Kay
- Department of Rheumatology, Odense University Hospital, Denmark
| | - A Voss
- Department of Rheumatology, Odense University Hospital, Denmark
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Beil M, Sviri S, de la Guardia V, Stav I, Ben-Chetrit E, van Heerden PV. Prognosis of patients with rheumatic diseases admitted to intensive care. Anaesth Intensive Care 2017; 45:67-72. [PMID: 28072937 DOI: 10.1177/0310057x1704500110] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Variable mortality rates have been reported for patients with rheumatic diseases admitted to an intensive care unit (ICU). Due to the absence of appropriate control groups in previous studies, it is not known whether the presence of a rheumatic disease constitutes a risk factor. Moreover, the accuracy of the Acute Physiology and Chronic Health Evaluation II (APACHE II) score for predicting outcome in this group of patients has been questioned. The primary goal of this study was to compare outcome of patients with rheumatic diseases admitted to a medical ICU to those of controls. The records of all patients admitted between 1 April 2003 and 30 June 2014 (n=4020) were screened for the presence of a rheumatic disease during admission (n=138). The diagnosis of a rheumatic disease was by standard criteria for these conditions. An age- and gender-matched control group of patients without a rheumatic disease was extracted from the patient population in the database during the same period (n=831). Mortality in ICU, in hospital and after 180 days did not differ significantly between patients with and without rheumatic diseases. There was no difference in the performance of the APACHE II score for predicting outcome in patients with rheumatic diseases and controls. This score, as well as a requirement for the use of inotropes or vasopressors, accurately predicted hospital mortality in the group of patients with rheumatic diseases. In conclusion, patients with a rheumatic condition admitted to intensive care do not do significantly worse than patients without such a disease.
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Affiliation(s)
- M Beil
- Visiting Professor, Medical Intensive Care Unit, Hadassah University Hospital, En Kerem, Jerusalem, Israel, University of Ulm, Germany
| | - S Sviri
- Director, Medical Intensive Care Unit, Hadassah University Hospital, En Kerem, Jerusalem, Israel
| | - V de la Guardia
- Fellow, Medical Intensive Care Unit, Hadassah University Hospital, En Kerem, Jerusalem, Israel
| | - I Stav
- Data Analyst, Medical Intensive Care Unit, Hadassah University Hospital, En Kerem, Jerusalem, Israel
| | - E Ben-Chetrit
- Professor, Rheumatology Unit, Hadassah University Hospital, En Kerem, Jerusalem, Israel
| | - P V van Heerden
- Professor of Anesthesiology, General Intensive Care Unit, Hadassah University Hospital, En Kerem, Jerusalem, Israel
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The Therapeutic Effects of the Chinese Herbal Medicine, Lang Chuang Fang Granule, on Lupus-Prone MRL/lpr Mice. EVIDENCE-BASED COMPLEMENTARY AND ALTERNATIVE MEDICINE 2016; 2016:8562528. [PMID: 27034698 PMCID: PMC4789466 DOI: 10.1155/2016/8562528] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/19/2015] [Revised: 01/24/2016] [Accepted: 02/01/2016] [Indexed: 11/18/2022]
Abstract
Systemic lupus erythematosus (SLE) is a chronic autoimmune disease that leads to severe multiorgan damage. Lang Chuang Fang (LCF) is a Chinese herbal medicine that is clinically prescribed for treating SLE. In this study, we examined the therapeutic effects of LCF granule on lupus-prone MRL/lpr mice. Female mice were randomly separated into six groups, and LCF treatment groups received LCF granule at the dosage of 0.97 g/kg/d, 1.95 g/kg/d, and 3.90 g/kg/d, respectively. Here, we found that, compared to the MRL/lpr mice, both the spleen coefficient and thymus coefficient were reduced in the LCF granule-treated mice. There was a marked downregulation in CRP and anti-dsDNA autoantibody and an evident upregulation of CH50 in LCF granule-treated mice. LCF granule treatment also obviously reduced the proteinuria, BUN, and SCr levels in MRL/lpr mice at the dosage of 0.97 g/kg/d, 1.95 g/kg/d, and 3.90 g/kg/d, indicating that LCF granule alleviated the renal injury of MRL/lpr mice. Furthermore, LCF granule decreased p65 NF-κB levels and increased Sirt1 and Nrf2 levels in the kidney tissues of MRL/lpr mice, which might elucidate the beneficial effects of LCF on lupus nephritis. In conclusion, this study demonstrates that LCF granule has therapeutic effects on lupus-prone MRL/lpr mice.
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The 2014 ACR annual meeting: a bird’s eye view of autoimmunity in 2015. Autoimmun Rev 2015; 14:622-32. [DOI: 10.1016/j.autrev.2015.03.003] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2015] [Accepted: 03/12/2015] [Indexed: 12/14/2022]
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Beça S, Rodríguez-Pintó I, Alba MA, Cervera R, Espinosa G. Development and validation of a risk calculator to differentiate flares from infections in systemic lupus erythematosus patients with fever. Autoimmun Rev 2015; 14:586-93. [DOI: 10.1016/j.autrev.2015.02.005] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2015] [Accepted: 02/11/2015] [Indexed: 01/22/2023]
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Perricone C, Perricone R. ‘Autoimmunity cutting edge at the 21st century. Representation of the 9th International Congress of Autoimmunity, Nice, France 2014’. Autoimmun Rev 2014; 13:1079-81. [DOI: 10.1016/j.autrev.2014.10.015] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2014] [Accepted: 10/10/2014] [Indexed: 01/08/2023]
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