1
|
Ćehić M, Brkljača Z, Filić Ž, Crnolatac I, Vujaklija D, Bakarić D. (Un)coupling the factors contributing to the interfacial activation of Streptomyces rimosus lipase: computational and spectrophotometric study. J DISPER SCI TECHNOL 2022. [DOI: 10.1080/01932691.2022.2145304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Affiliation(s)
- Mirsada Ćehić
- Division for Physical Chemistry, Ruđer Bošković Institute, Zagreb, Croatia
| | - Zlatko Brkljača
- Division for Organic Chemistry and Biochemistry, Ruđer Bošković Institute, Zagreb, Croatia
| | - Želimira Filić
- Division for Physical Chemistry, Ruđer Bošković Institute, Zagreb, Croatia
| | - Ivo Crnolatac
- Division for Organic Chemistry and Biochemistry, Ruđer Bošković Institute, Zagreb, Croatia
| | - Dušica Vujaklija
- Division for Physical Chemistry, Ruđer Bošković Institute, Zagreb, Croatia
| | - Danijela Bakarić
- Division for Organic Chemistry and Biochemistry, Ruđer Bošković Institute, Zagreb, Croatia
| |
Collapse
|
2
|
Weiler AJ, Spitz O, Gudzuhn M, Schott-Verdugo SN, Kamel M, Thiele B, Streit WR, Kedrov A, Schmitt L, Gohlke H, Kovacic F. A phospholipase B from Pseudomonas aeruginosa with activity towards endogenous phospholipids affects biofilm assembly. Biochim Biophys Acta Mol Cell Biol Lipids 2022; 1867:159101. [DOI: 10.1016/j.bbalip.2021.159101] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2021] [Revised: 12/09/2021] [Accepted: 12/15/2021] [Indexed: 11/29/2022]
|
3
|
Bleffert F, Granzin J, Gohlke H, Batra-Safferling R, Jaeger KE, Kovacic F. Pseudomonas aeruginosa esterase PA2949, a bacterial homolog of the human membrane esterase ABHD6: expression, purification and crystallization. Acta Crystallogr F Struct Biol Commun 2019; 75:270-277. [PMID: 30950828 PMCID: PMC6450514 DOI: 10.1107/s2053230x19002152] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2018] [Accepted: 02/10/2019] [Indexed: 12/02/2022] Open
Abstract
The human membrane-bound α/β-hydrolase domain 6 (ABHD6) protein modulates endocannabinoid signaling, which controls appetite, pain and learning, as well as being linked to Alzheimer's and Parkinson's diseases, through the degradation of the key lipid messenger 2-arachidonylglycerol (2-AG). This makes ABHD6 an attractive therapeutic target that lacks structural information. In order to better understand the molecular mechanism of 2-AG-hydrolyzing enzymes, the PA2949 protein from Pseudomonas aeruginosa, which has 49% sequence similarity to the ABHD6 protein, was cloned, overexpressed, purified and crystallized. Overexpression of PA2949 in the homologous host yielded the membrane-bound enzyme, which was purified in milligram amounts. Besides their sequence similarity, the enzymes both show specificity for the hydrolysis of 2-AG and esters of medium-length fatty acids. PA2949 in the presence of n-octyl β-D-glucoside showed a higher activity and stability at room temperature than those previously reported for PA2949 overexpressed and purified from Escherichia coli. A suitable expression host and stabilizing detergent were crucial for obtaining crystals, which belonged to the tetragonal space group I4122 and diffracted to a resolution of 2.54 Å. This study provides hints on the functional similarity of ABHD6-like proteins in prokaryotes and eukaryotes, and might guide the structural study of these difficult-to-crystallize proteins.
Collapse
Affiliation(s)
- Florian Bleffert
- Institute of Molecular Enzyme Technology, Heinrich-Heine-Universität Düsseldorf, Forschungszentrum Jülich GmbH, D-52426 Jülich, Germany
| | - Joachim Granzin
- Institute of Complex Systems ICS-6: Structural Biochemistry, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany
| | - Holger Gohlke
- Institute of Complex Systems ICS-6: Structural Biochemistry, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany
- Institute of Pharmaceutical and Medicinal Chemistry, Heinrich-Heine-Universität Düsseldorf, D-40225 Düsseldorf, Germany
- John von Neumann Institute for Computing (NIC) and Jülich Supercomputing Centre (JSC), Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany
| | - Renu Batra-Safferling
- Institute of Complex Systems ICS-6: Structural Biochemistry, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany
| | - Karl-Erich Jaeger
- Institute of Molecular Enzyme Technology, Heinrich-Heine-Universität Düsseldorf, Forschungszentrum Jülich GmbH, D-52426 Jülich, Germany
- Institute of Bio- and Geosciences IBG-1: Biotechnology, Forschungszentrum Jülich GmbH, D-52426 Jülich, Germany
| | - Filip Kovacic
- Institute of Molecular Enzyme Technology, Heinrich-Heine-Universität Düsseldorf, Forschungszentrum Jülich GmbH, D-52426 Jülich, Germany
| |
Collapse
|
4
|
Kovacic F, Bleffert F, Caliskan M, Wilhelm S, Granzin J, Batra-Safferling R, Jaeger KE. A membrane-bound esterase PA2949 from Pseudomonas aeruginosa is expressed and purified from Escherichia coli. FEBS Open Bio 2016; 6:484-93. [PMID: 27419054 PMCID: PMC4856427 DOI: 10.1002/2211-5463.12061] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2016] [Revised: 03/01/2016] [Accepted: 03/16/2016] [Indexed: 01/03/2023] Open
Abstract
Pseudomonas aeruginosa strain 1001 produces an esterase (EstA) that can hydrolyse the racemic methyl ester of β-acetylthioisobutyrate to produce the (D)-enantiomer, which serves as a precursor of captopril, a drug used for treatment of hypertension. We show here that PA2949 from P. aeruginosa PA01, a homologue of EstA, can efficiently be expressed in an enzymatically active form in E. coli. The enzyme is membrane-associated as demonstrated by cell fractionation studies. PA2949 was purified to homogeneity after solubilisation with the nonionic detergent, Triton X-100, and was shown to possess a conserved esterase catalytic triad consisting of Ser137-His258-Asp286. Our results should allow the development of an expression and purification strategy to produce this biotechnologically relevant esterase in a pure form with a high yield.
Collapse
Affiliation(s)
- Filip Kovacic
- Institute of Molecular Enzyme Technology Heinrich-Heine Universität Düsseldorf, Forschungszentrum Jülich Germany
| | - Florian Bleffert
- Institute of Molecular Enzyme Technology Heinrich-Heine Universität Düsseldorf, Forschungszentrum Jülich Germany
| | - Muttalip Caliskan
- Institute of Molecular Enzyme Technology Heinrich-Heine Universität Düsseldorf, Forschungszentrum Jülich Germany
| | - Susanne Wilhelm
- Institute of Molecular Enzyme Technology Heinrich-Heine Universität Düsseldorf, Forschungszentrum Jülich Germany
| | - Joachim Granzin
- Institute of Complex Systems, ICS-6: Structural Biochemistry Forschungszentrum Jülich Germany
| | - Renu Batra-Safferling
- Institute of Complex Systems, ICS-6: Structural Biochemistry Forschungszentrum Jülich Germany
| | - Karl-Erich Jaeger
- Institute of Molecular Enzyme Technology Heinrich-Heine Universität Düsseldorf, Forschungszentrum Jülich Germany; Institute of Bio- and Geosciences IBG-1: Biotechnology Forschungszentrum Jülich GmbH Germany
| |
Collapse
|
5
|
Long time storage (archiving) of peptide, protein and tryptic digest samples on disposable nano-coated polymer targets for MALDI MS. EUPA OPEN PROTEOMICS 2015. [DOI: 10.1016/j.euprot.2015.07.013] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
6
|
Ašler IL, Kovačić F, Marchetti-Deschmann M, Allmaier G, Štefanić Z, Kojić-Prodić B. Inhibition of extracellular lipase from Streptomyces rimosus with 3,4-dichloroisocoumarin. J Enzyme Inhib Med Chem 2012; 28:1094-104. [DOI: 10.3109/14756366.2012.716834] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- Ivana Leščić Ašler
- Rudjer Bošković Institute, Department for Physical Chemistry,
Zagreb, Croatia
| | - Filip Kovačić
- Institute of Molecular Enzyme Technology, Heinrich-Heine University Düsseldorf, Research Center Jülich,
Jülich, Germany
| | | | - Günter Allmaier
- Vienna University of Technology, Institute for Chemical Technologies and Analytics,
Vienna, Austria
| | - Zoran Štefanić
- Rudjer Bošković Institute, Department for Physical Chemistry,
Zagreb, Croatia
| | | |
Collapse
|
7
|
Markwick NP, Poulton J, McGhie TK, Wohlers MW, Christeller JT. The effects of the broad-specificity lipase inhibitor, tetrahydrolipstatin, on the growth, development and survival of the larvae of Epiphyas postvittana (Walker) (Tortricidae, Lepidoptera). JOURNAL OF INSECT PHYSIOLOGY 2011; 57:1643-1650. [PMID: 21910995 DOI: 10.1016/j.jinsphys.2011.08.018] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2011] [Revised: 08/23/2011] [Accepted: 08/24/2011] [Indexed: 05/31/2023]
Abstract
The effects of the lipase inhibitor, tetrahydrolipstatin (THL), on neonate Epiphyas postvittana (Walker) (Lepidoptera, Tortricidae) larvae were investigated by feeding on control artificial diets (with and without 2% ethanol) and diets containing 2% ethanol and one of three concentrations of THL (0.011%, 0.037% and 0.11%). Small but significant reductions in growth rate, percent pupation and time to pupation were observed for larvae feeding on 2% ethanol control diet compared with standard control diet, but larger reductions in all parameters occurred with increasing THL concentration. Third instar larvae fed 0.011% THL in the diet had 40% of the midgut lipase activity in the relevant control larvae and showed up-regulation of gene expression of the gastric lipase-like family but not the pancreatic lipase-like family of midgut lipases.
Collapse
Affiliation(s)
- Ngaire P Markwick
- The New Zealand Institute for Plant & Food Research Limited, Private Bag 92169, Auckland 1142, New Zealand
| | | | | | | | | |
Collapse
|
8
|
Lipase inhibitor orlistat decreases incorporation of eicosapentaenoic and docosahexaenoic acids in rat tissues. Nutr Res 2010; 30:134-40. [PMID: 20226999 DOI: 10.1016/j.nutres.2009.12.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2009] [Revised: 12/01/2009] [Accepted: 12/07/2009] [Indexed: 10/19/2022]
Abstract
Orlistat is a gastric and pancreatic lipases inhibitor that is often prescribed to obese subjects. Orlistat has been shown to decrease the absorption of biologically important lipophilic micronutrients such as liposoluble vitamins. We hypothesized that long-term administration of orlistat may lower the incorporation of n-3 long-chain polyunsaturated fatty acids (LC-PUFA) in blood lipids and tissues. This hypothesis was tested in rats fed a diet supplemented with fish oil as a source of n-3 LC-PUFA. Male Wistar rats (n = 18) were divided into 3 groups and fed experimental high-fat diets containing fish oil (control diet) or fish oil plus orlistat (200 and 400 mg/kg of diet) over the course of 3 weeks. Fat absorption and the level of eicosapentaenoic acid (EPA) and docosahexaenoic acid, among other fatty acids, in red blood cells, plasma, liver, and spleen, were measured at the end of the experimental period. The results show that at 200 mg and 400 mg/kg of diet orlistat lowers fat absorption by 9% (P = .008) and 54% (P = .008). Orlistat given at the higher level induced a reduction of the incorporation of EPA in red blood cell (-45%; P = .006) and in plasma (-34%; P = .026) compared to the control group. Our results confirmed that administration of orlistat reduces incorporation of n-3 LC-PUFA in blood lipids and tissues in a rat model.
Collapse
|
9
|
Kluge AF, Petter RC. Acylating drugs: redesigning natural covalent inhibitors. Curr Opin Chem Biol 2010; 14:421-7. [PMID: 20457000 DOI: 10.1016/j.cbpa.2010.03.035] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2010] [Revised: 02/18/2010] [Accepted: 03/26/2010] [Indexed: 11/26/2022]
Abstract
Structural modification of naturally occurring beta-lactams and beta-lactones is a highly effective strategy for generating drugs for treating bacterial infections, cancer, obesity, and hyperlipidemia. These drugs acylate catalytic amino acids (serine, threonine, or cysteine) in enzyme targets such as penicillin-binding proteins (PBPs), beta-lactamases, lipases, HMG-CoA reductase, fatty acid synthetase, and the 20S proteasome. Optimally performing drugs combine features of high target affinity, chemoselective reactivity, and high stability of the acylated target protein. This review provides a perspective on these two classes of acylating agents and summarizes recent advances in mechanism and structure-based design of acylating drugs.
Collapse
Affiliation(s)
- Arthur F Kluge
- Avila Therapeutics, 100 Beaver Street, Waltham, MA 02453, USA
| | | |
Collapse
|
10
|
Tiss A, Lengsfeld H, Verger R. A comparative kinetic study on human pancreatic and Thermomyces lanuginosa lipases: Inhibitory effects of tetrahydrolipstatin in the presence of lipid substrates. ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.molcatb.2009.08.011] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
|
11
|
Inhibition of human pancreatic lipase by tetrahydrolipstatin: Further kinetic studies showing its reversibility. ACTA ACUST UNITED AC 2009. [DOI: 10.1016/j.molcatb.2008.11.003] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
|
12
|
Bielen A, Ćetković H, Long PF, Schwab H, Abramić M, Vujaklija D. The SGNH-hydrolase of Streptomyces coelicolor has (aryl)esterase and a true lipase activity. Biochimie 2009; 91:390-400. [DOI: 10.1016/j.biochi.2008.10.018] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2008] [Accepted: 10/28/2008] [Indexed: 11/30/2022]
|
13
|
Keller PM, Rust T, Murphy DJ, Matico R, Trill JJ, Krawiec JA, Jurewicz A, Jaye M, Harpel M, Thrall S, Schwartz B. A high-throughput screen for endothelial lipase using HDL as substrate. ACTA ACUST UNITED AC 2008; 13:468-75. [PMID: 18566479 DOI: 10.1177/1087057108319738] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Endothelial lipase (EL) is a 482-amino-acid protein from the triglyceride lipase gene family that uses a Ser-His-Asp triad for catalysis. Its expression in endothelial cells and preference for phospholipids rather than triglycerides are unique. Animal models in which it is overexpressed or knocked out indicate EL levels are inversely correlated with high-density lipoprotein cholesterol (HDL-C). HDL-C is commonly referred to as the good form of cholesterol because it is involved in the reverse cholesterol transport pathway, in which excess cholesterol is effluxed from peripheral tissues for excretion or reabsorption. Thus, EL inhibition in humans is expected to lead to increases in HDL levels and possibly a decrease in cardiovascular disease. To discover inhibitors of EL, a coupled assay for EL has been developed, using its native substrate, HDL. Hydrolysis of HDL by EL yields free fatty acids, which are coupled through acyl-CoA synthetase, acyl-CoA oxidase, and horseradish peroxidase to produce the fluorescent species resorufin. This assay was developed into a 5-microL, 1536-well assay format, and a high-throughput screen was executed against the GSK collection. In addition to describing the screening results, novel post-HTS mechanism-of-action studies were developed for EL and applied to 1 of the screening hits as an example.
Collapse
Affiliation(s)
- Paul M Keller
- GSK Screening & Compound Profiling, Collegeville, Pennsylvania, USA
| | | | | | | | | | | | | | | | | | | | | |
Collapse
|