1
|
Hrebonkin A, Afonin S, Nikitjuka A, Borysov OV, Leitis G, Babii O, Koniev S, Lorig T, Grage SL, Nick P, Ulrich AS, Jirgensons A, Komarov IV. Spiropyran-Based Photoisomerizable α-Amino Acid for Membrane-Active Peptide Modification. Chemistry 2024; 30:e202400066. [PMID: 38366887 DOI: 10.1002/chem.202400066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2024] [Revised: 02/11/2024] [Accepted: 02/12/2024] [Indexed: 02/18/2024]
Abstract
Photoisomerizable peptides are promising drug candidates in photopharmacology. While azobenzene- and diarylethene-containing photoisomerizable peptides have already demonstrated their potential in this regard, reports on the use of spiropyrans to photoregulate bioactive peptides are still scarce. This work focuses on the design and synthesis of a spiropyran-derived amino acid, (S)-2-amino-3-(6'-methoxy-1',3',3'-trimethylspiro-[2H-1-benzopyran-2,2'-indolin-6-yl])propanoic acid, which is suitable for the preparation of photoisomerizable peptides. The utility of this amino acid is demonstrated by incorporating it into the backbone of BP100, a known membrane-active peptide, and by examining the photoregulation of the membrane perturbation by the spiropyran-containing peptides. The toxicity of the peptides (against the plant cell line BY-2), their bacteriotoxicity (E. coli), and actin-auxin oscillator modulation ability were shown to be significantly dependent on the photoisomeric state of the spiropyran unit.
Collapse
Affiliation(s)
- Andrii Hrebonkin
- Karlsruhe Institute of Technology, POB 3640, 76021, Karlsruhe, Germany
- Enamine, Vul. Winstona Churchilla 78, 02094, Kyiv, Ukraine
| | - Sergii Afonin
- Karlsruhe Institute of Technology, POB 3640, 76021, Karlsruhe, Germany
| | - Anna Nikitjuka
- Enamine, Vul. Winstona Churchilla 78, 02094, Kyiv, Ukraine
- Latvian Institute of Organic Synthesis, Aizkraukles iela 21, 1006, Riga, Latvia
| | - Oleksandr V Borysov
- Enamine, Vul. Winstona Churchilla 78, 02094, Kyiv, Ukraine
- Latvian Institute of Organic Synthesis, Aizkraukles iela 21, 1006, Riga, Latvia
| | - Gundars Leitis
- Enamine, Vul. Winstona Churchilla 78, 02094, Kyiv, Ukraine
- Latvian Institute of Organic Synthesis, Aizkraukles iela 21, 1006, Riga, Latvia
| | - Oleg Babii
- Karlsruhe Institute of Technology, POB 3640, 76021, Karlsruhe, Germany
| | - Serhii Koniev
- Enamine, Vul. Winstona Churchilla 78, 02094, Kyiv, Ukraine
- Taras Shevchenko National University of Kyiv, Vul. Volodymyrska 60, 01601, Kyiv, Ukraine
| | - Theo Lorig
- Karlsruhe Institute of Technology, POB 3640, 76021, Karlsruhe, Germany
| | - Stephan L Grage
- Karlsruhe Institute of Technology, POB 3640, 76021, Karlsruhe, Germany
| | - Peter Nick
- Karlsruhe Institute of Technology, POB 3640, 76021, Karlsruhe, Germany
| | - Anne S Ulrich
- Karlsruhe Institute of Technology, POB 3640, 76021, Karlsruhe, Germany
| | - Aigars Jirgensons
- Latvian Institute of Organic Synthesis, Aizkraukles iela 21, 1006, Riga, Latvia
| | - Igor V Komarov
- Enamine, Vul. Winstona Churchilla 78, 02094, Kyiv, Ukraine
- Taras Shevchenko National University of Kyiv, Vul. Volodymyrska 60, 01601, Kyiv, Ukraine
- Lumobiotics, Auerstraße 2, 76227, Karlsruhe., Germany
| |
Collapse
|
2
|
Quijia CR, Navegante G, Sábio RM, Valente V, Ocaña A, Alonso-Moreno C, Frem RCG, Chorilli M. Macrophage Cell Membrane Coating on Piperine-Loaded MIL-100(Fe) Nanoparticles for Breast Cancer Treatment. J Funct Biomater 2023; 14:319. [PMID: 37367283 DOI: 10.3390/jfb14060319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2023] [Revised: 06/06/2023] [Accepted: 06/08/2023] [Indexed: 06/28/2023] Open
Abstract
Piperine (PIP), a compound found in Piper longum, has shown promise as a potential chemotherapeutic agent for breast cancer. However, its inherent toxicity has limited its application. To overcome this challenge, researchers have developed PIP@MIL-100(Fe), an organic metal-organic framework (MOF) that encapsulates PIP for breast cancer treatment. Nanotechnology offers further treatment options, including the modification of nanostructures with macrophage membranes (MM) to enhance the evasion of the immune system. In this study, the researchers aimed to evaluate the potential of MM-coated MOFs encapsulated with PIP for breast cancer treatment. They successfully synthesized MM@PIP@MIL-100(Fe) through impregnation synthesis. The presence of MM coating on the MOF surface was confirmed through SDS-PAGE analysis, which revealed distinct protein bands. Transmission electron microscopy (TEM) images demonstrated the existence of a PIP@MIL-100(Fe) core with a diameter of around 50 nm, surrounded by an outer lipid bilayer layer measuring approximately 10 nm in thickness. Furthermore, the researchers evaluated the cytotoxicity indices of the nanoparticles against various breast cancer cell lines, including MCF-7, BT-549, SKBR-3, and MDA. The results demonstrated that the MOFs exhibited between 4 and 17 times higher cytotoxicity (IC50) in all four cell lines compared to free PIP (IC50 = 193.67 ± 0.30 µM). These findings suggest that MM@PIP@MIL-100(Fe) holds potential as an effective treatment for breast cancer. The study's outcomes highlight the potential of utilizing MM-coated MOFs encapsulated with PIP as an innovative approach for breast cancer therapy, offering improved cytotoxicity compared to free PIP alone. Further research and development are warranted to explore the clinical translation and optimize the efficacy and safety of this treatment strategy.
Collapse
Affiliation(s)
- Christian Rafael Quijia
- Department of Drugs and Medicines, School of Pharmaceutical Sciences, São Paulo State University (UNESP), Rodovia Araraquara Jau, Km 01-s/n-Campos Ville, Araraquara 14800-903, Brazil
| | - Geovana Navegante
- Department of Clinical Analysis, School of Pharmaceutical Sciences, São Paulo State University (UNESP), Rodovia Araraquara Jau, Km 01-s/n-Campos Ville, Araraquara 14800-903, Brazil
| | - Rafael Miguel Sábio
- Department of Drugs and Medicines, School of Pharmaceutical Sciences, São Paulo State University (UNESP), Rodovia Araraquara Jau, Km 01-s/n-Campos Ville, Araraquara 14800-903, Brazil
| | - Valeria Valente
- Department of Clinical Analysis, School of Pharmaceutical Sciences, São Paulo State University (UNESP), Rodovia Araraquara Jau, Km 01-s/n-Campos Ville, Araraquara 14800-903, Brazil
| | - Alberto Ocaña
- Department of Medical Oncology, Hospital Clinico San Carlos and Health Research Institute of the Hospital Clinico San Carlos, 28040 Madrid, Spain
| | - Carlos Alonso-Moreno
- Unidad NanoDrug, Facultad de Farmacia, Universidad de Castilla-La Mancha, 02008 Albacete, Spain
| | - Regina Célia Galvão Frem
- Institute of Chemistry, São Paulo State University (UNESP), Prof. Francisco Degni 55, Araraquara 14800-060, Brazil
| | - Marlus Chorilli
- Department of Drugs and Medicines, School of Pharmaceutical Sciences, São Paulo State University (UNESP), Rodovia Araraquara Jau, Km 01-s/n-Campos Ville, Araraquara 14800-903, Brazil
| |
Collapse
|
3
|
Meingast CL, Joshi PU, Turpeinen DG, Xu X, Holstein M, Feroz H, Ranjan S, Ghose S, Li ZJ, Heldt CL. Physiochemical properties of enveloped viruses and arginine dictate inactivation. Biotechnol J 2021; 16:e2000342. [PMID: 33877739 DOI: 10.1002/biot.202000342] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Revised: 03/28/2021] [Accepted: 03/30/2021] [Indexed: 11/06/2022]
Abstract
BACKGROUND Therapeutic protein manufacturing would benefit by having an arsenal of ways to inactivate viruses. There have been many publications on the virus inactivation ability of arginine at pH 4.0, but the mechanism of this inactivation is unknown. This study explored how virus structure and solution conditions enhance virus inactivation by arginine and leads to a better understanding of the mechanism of virus inactivation by arginine. RESULTS Large diameter viruses from the Herpesviridae family (SuHV-1, HSV-1) with loosely packed lipids were highly inactivated by arginine, whereas small diameter, enveloped viruses (equine arteritis virus (EAV) and bovine viral diarrhea virus (BVDV)) with tightly packed lipids were negligibly inactivated by arginine. To increase the inactivation of viruses resistant to arginine, arginine-derivatives and arginine peptides were tested. Derivates and peptides demonstrated that a greater capacity for clustering and added hydrophobicity enhanced virus inactivation. Dynamic light scattering (DLS) and transmission electron microscopy (TEM) detected increases in virus size after arginine exposure, supporting the mechanism of lipid expansion. CONCLUSIONS Arginine most likely interacts with the lipid membrane to cause inactivation. This is shown by larger viruses being more sensitive to inactivation and expansion of the viral size. The enhancement of arginine inactivation when increased hydrophobic molecules are present or arginine is clustered demonstrates a potential mechanism of how arginine interacts with the lipid membrane.
Collapse
Affiliation(s)
- Christa L Meingast
- Department of Environmental Engineering, Michigan Technological University, Houghton, Michigan, USA.,Health Research Institute, Michigan Technological University, Houghton, Michigan, USA
| | - Pratik U Joshi
- Health Research Institute, Michigan Technological University, Houghton, Michigan, USA.,Department of Chemical Engineering, Michigan Technological University, Houghton, Michigan, USA
| | - Dylan G Turpeinen
- Health Research Institute, Michigan Technological University, Houghton, Michigan, USA.,Department of Chemical Engineering, Michigan Technological University, Houghton, Michigan, USA
| | - Xuankuo Xu
- Biologics Process Development, Global Product Development and Supply, Bristol Myers Squibb, Devens, Massachusetts, USA
| | - Melissa Holstein
- Biologics Process Development, Global Product Development and Supply, Bristol Myers Squibb, Devens, Massachusetts, USA
| | - Hasin Feroz
- Biologics Process Development, Global Product Development and Supply, Bristol Myers Squibb, Devens, Massachusetts, USA
| | - Swarnim Ranjan
- Biologics Process Development, Global Product Development and Supply, Bristol Myers Squibb, Devens, Massachusetts, USA
| | - Sanchayita Ghose
- Biologics Process Development, Global Product Development and Supply, Bristol Myers Squibb, Devens, Massachusetts, USA
| | - Zheng Jian Li
- Biologics Process Development, Global Product Development and Supply, Bristol Myers Squibb, Devens, Massachusetts, USA
| | - Caryn L Heldt
- Health Research Institute, Michigan Technological University, Houghton, Michigan, USA.,Department of Chemical Engineering, Michigan Technological University, Houghton, Michigan, USA
| |
Collapse
|
4
|
Hu T, Zhang Z, Hu H, Euston SR, Pan S. A Comprehensive Study on Self-Assembly and Gelation of C 13-Dipeptides-From Design Strategies to Functionalities. Biomacromolecules 2019; 21:670-679. [PMID: 31794666 DOI: 10.1021/acs.biomac.9b01386] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Computational and experimental methods were applied to investigate the self-assembly and gelation of C13-dipeptides. A modified aggregation propensity (APS) was introduced to correlate the effects of side chains of amino acids on the tendency to aggregate. From the experimental results, the ranges of 0.156 < APS < 0.250 seemed to be a proper region for the C13-dipeptides to form hydrogels, while other molecules with higher or lower APS were insoluble or dissociated. As observed from molecular dynamics simulations, the C13-dipeptides first formed small aggregates through hydrophobic interactions and then rearranged through electrostatic attractions and hydrogen bonds for self-assembly. The C13-dipeptides tended to be antiparallel packed, as shown by hydrogen bonding analyses. Experimental observations and analyses on the structures of C13-dipeptide hydrogels matched the computational conclusions very well. From the five selected gelators, i.e., C13-GW, C13-VY, and C13-WT, strong π-π stacking was observed. For C13-WS, strong hydrogen bonding was found, and in C13-WY, both strong π-π interactions and hydrogen bonds were found. It takes around 90 min or longer for C13-dipeptides to form hydrogels, and those formed by C13-WY and C13-WS had weak water holding capacities, which might be due to strong intermolecular hydrogen bonding. From rheological studies, the C13-dipeptides formed strong chemical gels that were stabilized by strong interactions between the molecular aggregates. These gelators exhibit the potentials to be environmentally friendly substitutes for the common functionalized peptide gelators.
Collapse
Affiliation(s)
- Tan Hu
- College of Food Science and Technology , Huazhong Agricultural University , No. 1 Shizishan Road , Wuhan , Hubei 430070 , PR China.,Key Laboratory of Environment Correlative Dietology , Huazhong Agricultural University , Ministry of Education, Wuhan , Hubei 430070 , PR China
| | - Zhuo Zhang
- College of Food Science and Technology , Huazhong Agricultural University , No. 1 Shizishan Road , Wuhan , Hubei 430070 , PR China.,Key Laboratory of Environment Correlative Dietology , Huazhong Agricultural University , Ministry of Education, Wuhan , Hubei 430070 , PR China
| | - Hao Hu
- College of Food Science and Technology , Huazhong Agricultural University , No. 1 Shizishan Road , Wuhan , Hubei 430070 , PR China.,Key Laboratory of Environment Correlative Dietology , Huazhong Agricultural University , Ministry of Education, Wuhan , Hubei 430070 , PR China
| | - Stephen Robert Euston
- Institute of Mechanical, Process & Energy Engineering School of Engineering & Physical Sciences , Heriot-Watt University , Edinburgh , EH14 4AS , United Kingdom
| | - Siyi Pan
- College of Food Science and Technology , Huazhong Agricultural University , No. 1 Shizishan Road , Wuhan , Hubei 430070 , PR China.,Key Laboratory of Environment Correlative Dietology , Huazhong Agricultural University , Ministry of Education, Wuhan , Hubei 430070 , PR China
| |
Collapse
|
5
|
Meingast C, Heldt CL. Arginine‐enveloped virus inactivation and potential mechanisms. Biotechnol Prog 2019; 36:e2931. [DOI: 10.1002/btpr.2931] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2019] [Revised: 10/09/2019] [Accepted: 10/14/2019] [Indexed: 11/06/2022]
Affiliation(s)
- Christa Meingast
- Department of Civil and Environmental Engineering Michigan Technological University Houghton Michigan
| | - Caryn L. Heldt
- Department of Chemical Engineering Michigan Technological University Houghton Michigan
| |
Collapse
|
6
|
Moulton ER, Hirsche KJ, Hobbs ML, Schwab JM, Bailey EG, Bell JD. Examining the effects of cholesterol on model membranes at high temperatures: Laurdan and Patman see it differently. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2018; 1860:1571-1579. [DOI: 10.1016/j.bbamem.2018.05.013] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2018] [Revised: 05/10/2018] [Accepted: 05/24/2018] [Indexed: 10/16/2022]
|
7
|
Almarwani B, Phambu EN, Alexander C, Nguyen HAT, Phambu N, Sunda-Meya A. Vesicles mimicking normal and cancer cell membranes exhibit differential responses to the cell-penetrating peptide Pep-1. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2018; 1860:1394-1402. [PMID: 29621495 DOI: 10.1016/j.bbamem.2018.03.022] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2017] [Revised: 03/08/2018] [Accepted: 03/28/2018] [Indexed: 01/10/2023]
Abstract
The cell-penetrating peptide (CPP) Pep-1 presents a great potential in drug delivery due to its intrinsic property to cross plasma membrane. However, its mechanism of entry into the cell remains unresolved. In this study, we compare the selectivity of Pep-1 towards vesicles mimicking normal and cancer cell membranes. The interaction was performed in a wide range of peptide-to-lipid molar ratios using infrared (IR), fluorescence, scanning electron microscopy (SEM), thermogravimetric analysis (TGA) and differential scanning calorimetry (DSC) techniques. At low peptide concentration, fluorescence experiments show that lipid-phosphatidylserine (PS) seems to enable Pep-1 translocation into cancer cell membrane as evidenced by the blue shift of its maximal emission wavelength. DSC data show that Pep-1 induces segregation of lipids. At high peptide concentration, IR data indicate that the interaction of Pep-1 is relatively stronger with normal cell membrane than with cancer cell membrane through the phosphate groups, while the interaction is weaker with normal cell membrane than with cancer cell membrane through the carbonyl groups. TGA and DSC data reveal that vesicles of normal cell membrane are thermally more stable than vesicles of cancer cell membrane. This suggests that the additional lipid PS included in cancer cell membrane has a destabilizing effect on the membrane structure. SEM images reveal that Pep-1 form superstructures including spherical particles and fibrils in the presence of both model membranes. PS seems to enhance peptide transport across cellular membranes. The biophysical techniques in this study provide valuable insights into the properties of CPPs in drug delivery systems.
Collapse
Affiliation(s)
- Bashiyar Almarwani
- Department of Chemistry, Tennessee State University, Nashville, TN 37209, USA
| | - Esther Nzuzi Phambu
- Department of Chemical & Biomolecular Engineering, New York University, Brooklyn, NY 11201, USA
| | | | - Ha Aimee T Nguyen
- Department of Physics and Computer Science, Xavier University of Louisiana, New Orleans, LA 70125, USA
| | - Nsoki Phambu
- Department of Chemistry, Tennessee State University, Nashville, TN 37209, USA.
| | - Anderson Sunda-Meya
- Department of Physics and Computer Science, Xavier University of Louisiana, New Orleans, LA 70125, USA.
| |
Collapse
|
8
|
Phambu N, Almarwani B, Alwadai A, Phambu EN, Faciane N, Marion C, Sunda-Meya A. Calorimetric and Spectroscopic Studies of the Effects of the Cell Penetrating Peptide Pep-1 and the Antimicrobial Peptide Combi-2 on Vesicles Mimicking Escherichia coli Membrane. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:12908-12915. [PMID: 29039950 DOI: 10.1021/acs.langmuir.7b01910] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The objective of this study is to measure and compare the effects of the cell penetrating peptide (CPP) Pep-1 and the antimicrobial peptide (AMP) combi-2 on vesicles of membranes mimicking Escherichia coli (E. coli). To characterize the effects of Pep-1 and combi-2 on E. coli membrane vesicles, a combination of five biophysical techniques was employed: fluorescence, infrared, scanning electron microscopy (SEM), thermogravimetric analysis (TGA), and differential scanning calorimetry (DSC) techniques. Upon addition of E. coli membranes, tryptophan fluorescence intensity of Pep-1 showed a sudden blue-shift and decreased in a nonconcentration-dependent manner while the intensity of combi-2 decreased in a concentration-dependent manner, most significantly for a very low peptide-to-lipid ratio of 1:40. Complexes of Pep-1 and combi-2 with E. coli membrane mimicking vesicles having shown a significant blue-shift in fluorescence intensity were then prepared and studied in freeze-dried states. IR results indicate that Pep-1 and combi-2 adopt a major 310-helix structure in the presence of E. coli membrane mimicking vesicles at low peptide concentration. Pep-1 and combi-2 have a similar effect on E. coli membrane mimicking vesicles at low concentration even though combi-2 is in the interfacial region of the bilayer while Pep-1 is located between the interfacial region and the hydrophobic region. Combi-2 at low concentration acts as a CPP. TGA and DSC results reveal that combi-2 has a stabilizing effect on E. coli at any concentration while Pep-1 stabilizes the E. coli membrane only at high concentration. Both peptides show a preferential interaction with one of the anionic lipids leading to clustering in E. coli membrane. SEM images reveal that Pep-1 and combi-2 form superstructures including fibrils in the presence of E. coli membrane mimicking vesicles. Calorimetric and spectroscopic techniques may be used in a complementary way with imaging techniques to gain more insights into peptide-lipid interactions.
Collapse
Affiliation(s)
- Nsoki Phambu
- Department of Chemistry, Tennessee State University , Nashville, Tennessee 37209, United States
| | - Bashiyar Almarwani
- Department of Chemistry, Tennessee State University , Nashville, Tennessee 37209, United States
| | - Amjad Alwadai
- Department of Chemistry, Tennessee State University , Nashville, Tennessee 37209, United States
| | - Esther N Phambu
- Department of Chemical & Biomolecular Engineering, New York University , Brooklyn, New York 11201, United States
| | - Natalie Faciane
- Department of Physics and Computer Science, Xavier University of Louisiana , New Orleans, Louisiana 70125, United States
| | - Carmel Marion
- Department of Physics and Computer Science, Xavier University of Louisiana , New Orleans, Louisiana 70125, United States
| | - Anderson Sunda-Meya
- Department of Physics and Computer Science, Xavier University of Louisiana , New Orleans, Louisiana 70125, United States
| |
Collapse
|
9
|
Booth V, Warschawski DE, Santisteban NP, Laadhari M, Marcotte I. Recent progress on the application of 2H solid-state NMR to probe the interaction of antimicrobial peptides with intact bacteria. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2017; 1865:1500-1511. [PMID: 28844739 DOI: 10.1016/j.bbapap.2017.07.018] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2017] [Revised: 07/13/2017] [Accepted: 07/25/2017] [Indexed: 10/19/2022]
Abstract
Discoveries relating to innate immunity and antimicrobial peptides (AMPs) granted Bruce Beutler and Jules Hoffmann a Nobel prize in medicine in 2011, and opened up new avenues for the development of therapies against infections, and even cancers. The mechanisms by which AMPs interact with, and ultimately disrupt, bacterial cell membranes is still, to a large extent, incompletely understood. Up until recently, this mechanism was studied using model lipid membranes that failed to reproduce the complexity of molecular interactions present in real cells comprising lipids but also membrane proteins, a cell wall containing peptidoglycan or lipopolysaccharides, and other molecules. In this review, we focus on recent attempts to study, at the molecular level, the interaction between cationic AMPs and intact bacteria, by 2H solid-state NMR. Specifically-labeled lipids allow us to focus on the interaction of AMPs with the heart of the bacterial membrane, and measure the lipid order and its variation upon interaction with various peptides. We will review the important parameters to consider in such a study, and summarize the results obtained in the past 5years on various peptides, in particular aurein 1.2, caerin 1.1, MSI-78 and CA(1-8)M(1-10). This article is part of a Special Issue entitled: Biophysics in Canada, edited by Lewis Kay, John Baenziger, Albert Berghuis and Peter Tieleman.
Collapse
Affiliation(s)
- Valerie Booth
- Department of Biochemistry, Memorial University of Newfoundland, St. John's, NL A1B 3X9, Canada; Department of Physics and Physical Oceanography, Memorial University of Newfoundland, St. John's, NL A1B 3X7, Canada
| | - Dror E Warschawski
- UMR 7099, CNRS - Université Paris Diderot, IBPC, 13 rue Pierre et Marie Curie, F-75005 Paris, France; Department of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Downtown Station, Montréal H3C 3P8, Canada
| | - Nury P Santisteban
- Department of Physics and Physical Oceanography, Memorial University of Newfoundland, St. John's, NL A1B 3X7, Canada
| | - Marwa Laadhari
- Department of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Downtown Station, Montréal H3C 3P8, Canada
| | - Isabelle Marcotte
- Department of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Downtown Station, Montréal H3C 3P8, Canada.
| |
Collapse
|
10
|
Kara S, Afonin S, Babii O, Tkachenko AN, Komarov IV, Ulrich AS. Diphytanoyl lipids as model systems for studying membrane-active peptides. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2017; 1859:1828-1837. [PMID: 28587828 DOI: 10.1016/j.bbamem.2017.06.003] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2017] [Revised: 06/01/2017] [Accepted: 06/02/2017] [Indexed: 01/28/2023]
Abstract
The branched chains in diphytanoyl lipids provide membranes with unique properties, such as high chemical/physical stability, low water permeability, and no gel-to-fluid phase transition at ambient temperature. Synthetic diphytanoyl phospholipids are often used as model membranes for electrophysiological experiments. To evaluate whether these sturdy lipids are also suitable for solid-state NMR, we have examined their interactions with a typical amphiphilic peptide in comparison with straight-chain lipids. First, their phase properties were monitored using 31P NMR, and the structural behaviour of the antimicrobial peptide PGLa was studied by 19F NMR and circular dichroism in oriented membrane samples. Only lipids with choline headgroups (DPhPC) were found to form stable lipid bilayers in oriented samples, while DPhPG, DPhPE and DPhPS display non-lamellar structures. Hence, the experimental temperature and hydration are crucial factors when using supported diphytanoyl lipids, as both parameters must be maintained in an appropriate range to avoid the formation of non-bilayer structures. For the same reason, a high content of other diphytanoyl lipids besides DPhPC in mixed lipid systems is not favourable. Unlike the situation in straight-chain membranes, we found that the α-helical PGLa was not able to insert into the tightly packed fluid bilayer of DPhPC but remained in a surface-bound state even at very high peptide concentration. This behaviour can be explained by the high cohesivity and the negative spontaneous curvature of the diphytanoyl lipids. These characteristic features must therefore be taken into consideration, both, in electrophysiological studies, and when interpreting the structural behaviour of membrane-active peptides in such lipid environment.
Collapse
Affiliation(s)
- Sezgin Kara
- Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology, Fritz-Haber-Weg 6, 76131 Karlsruhe, Germany
| | - Sergii Afonin
- Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology, P.O.B. 3640, 76021 Karlsruhe, Germany
| | - Oleg Babii
- Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology, Fritz-Haber-Weg 6, 76131 Karlsruhe, Germany; Institute of Biology and Medicine (IBM), Taras Shevchenko National University of Kyiv, vul. Volodymyrska 60, 01601 Kyiv, Ukraine
| | - Anton N Tkachenko
- Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology, Fritz-Haber-Weg 6, 76131 Karlsruhe, Germany; Institute of Biology and Medicine (IBM), Taras Shevchenko National University of Kyiv, vul. Volodymyrska 60, 01601 Kyiv, Ukraine
| | - Igor V Komarov
- Enamine Ltd., vul. Chervonotkatska 78, 02094 Kyiv, Ukraine; Institute of High Technologies (IHT), Taras Shevchenko National University of Kyiv, vul. Volodymyrska 60, 01601 Kyiv, Ukraine
| | - Anne S Ulrich
- Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology, Fritz-Haber-Weg 6, 76131 Karlsruhe, Germany; Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology, P.O.B. 3640, 76021 Karlsruhe, Germany.
| |
Collapse
|
11
|
Study of the Antimicrobial Activity of Tilapia Piscidin 3 (TP3) and TP4 and Their Effects on Immune Functions in Hybrid Tilapia (Oreochromis spp.). PLoS One 2017; 12:e0169678. [PMID: 28085905 PMCID: PMC5234776 DOI: 10.1371/journal.pone.0169678] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2016] [Accepted: 12/20/2016] [Indexed: 12/16/2022] Open
Abstract
To address the growing concern over antibiotic-resistant microbial infections in aquatic animals, we tested several promising alternative agents that have emerged as new drug candidates. Specifically, the tilapia piscidins are a group of peptides that possess antimicrobial, wound-healing, and antitumor functions. In this study, we focused on tilapia piscidin 3 (TP3) and TP4, which are peptides derived from Oreochromis niloticus, and investigated their inhibition of acute bacterial infections by infecting hybrid tilapia (Oreochromis spp.) with Vibrio vulnificus and evaluating the protective effects of pre-treating, co-treating, and post-treating fish with TP3 and TP4. In vivo experiments showed that co-treatment with V. vulnificus and TP3 (20 μg/fish) or TP4 (20 μg/fish) achieved 95.3% and 88.9% survival rates, respectively, after seven days. When we co-injected TP3 or TP4 and V. vulnificus into tilapia and then re-challenged the fish with V. vulnificus after 28 days, the tilapia exhibited survival rates of 35.6% and 42.2%, respectively. Pre-treatment with TP3 (30 μg/fish) or TP4 (20 μg/fish) for 30 minutes prior to V. vulnificus infection resulted in high survival rates of 28.9% and 37.8%, respectively, while post-treatment with TP3 (20 μg/fish or 30 μg/fish) or TP4 (20 μg/fish) 30 minutes after V. vulnificus infection yielded high survival rates of 33.3% and 48.9%. In summary, pre-treating, co-treating, and post-treating fish with TP3 or TP4 all effectively decreased the number of V. vulnificus bacteria and promoted significantly lower mortality rates in tilapia. The minimum inhibitory concentrations (MICs) of TP3 and TP4 that were effective for treating fish infected with V. vulnificus were 7.8 and 62.5 μg/ml, respectively, whereas the MICs of kanamycin and ampicillin were 31.2 and 3.91 μg/ml. The antimicrobial activity of these peptides was confirmed by transmission electron microscopy (TEM) and scanning electron microscopy (SEM), both of which showed that V. vulnificus disrupted the outer membranes of cells, resulting in the loss of cell shape and integrity. We examined whether TP3 and TP4 increased the membrane permeability of V. vulnificus by measuring the fluorescence resulting from the uptake of 1-N-phenyl-naphthylamine (NPN). Treating fish with TP3 and TP4 under different pH and temperature conditions did not significantly increase MIC values, suggesting that temperature and the acid-base environment do not affect AMP function. In addition, the qPCR results showed that TP3 and TP4 influence the expression of immune-responsive genes, including interleukin (IL)-1β, IL-6, and IL-8. In this study, we demonstrate that TP3 and TP4 show potential for development as drugs to combat fish bacterial infections in aquaculture.
Collapse
|
12
|
Evaluation of diacylphospholipids as boundary lipids for bacteriorhodopsin from structural and functional aspects. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2016; 1858:2106-2115. [DOI: 10.1016/j.bbamem.2016.06.006] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2015] [Revised: 06/08/2016] [Accepted: 06/10/2016] [Indexed: 11/18/2022]
|
13
|
Radchenko DS, Kattge S, Kara S, Ulrich AS, Afonin S. Does a methionine-to-norleucine substitution in PGLa influence peptide-membrane interactions? BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2016; 1858:2019-2027. [DOI: 10.1016/j.bbamem.2016.06.002] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2016] [Revised: 05/13/2016] [Accepted: 06/02/2016] [Indexed: 12/17/2022]
|
14
|
Grage SL, Afonin S, Kara S, Buth G, Ulrich AS. Membrane Thinning and Thickening Induced by Membrane-Active Amphipathic Peptides. Front Cell Dev Biol 2016; 4:65. [PMID: 27595096 PMCID: PMC4999517 DOI: 10.3389/fcell.2016.00065] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2016] [Accepted: 06/09/2016] [Indexed: 11/13/2022] Open
Abstract
Membrane thinning has been discussed as a fundamental mechanism by which antimicrobial peptides can perturb cellular membranes. To understand which factors play a role in this process, we compared several amphipathic peptides with different structures, sizes and functions in their influence on the lipid bilayer thickness. PGLa and magainin 2 from X. laevis were studied as typical representatives of antimicrobial cationic amphipathic α-helices. A 1:1 mixture of these peptides, which is known to possess synergistically enhanced activity, allowed us to evaluate whether and how this synergistic interaction correlates with changes in membrane thickness. Other systems investigated here include the α-helical stress-response peptide TisB from E. coli (which forms membrane-spanning dimers), as well as gramicidin S from A. migulanus (a natural antibiotic), and BP100 (designer-made antimicrobial and cell penetrating peptide). The latter two are very short, with a circular β-pleated and a compact α-helical structure, respectively. Solid-state (2)H-NMR and grazing incidence small angle X-ray scattering (GISAXS) on oriented phospholipid bilayers were used as complementary techniques to access the hydrophobic thickness as well as the bilayer-bilayer repeat distance including the water layer in between. This way, we found that magainin 2, gramicidin S, and BP100 induced membrane thinning, as expected for amphiphilic peptides residing in the polar/apolar interface of the bilayer. PGLa, on the other hand, decreased the hydrophobic thickness only at very high peptide:lipid ratios, and did not change the bilayer-bilayer repeat distance. TisB even caused an increase in the hydrophobic thickness and repeat distance. When reconstituted as a mixture, PGLa and magainin 2 showed a moderate thinning effect which was less than that of magainin 2 alone, hence their synergistically enhanced activity does not seem to correlate with a modulation of membrane thickness. Overall, the absence of a typical thinning response in the case of PGLa, and the increase in the repeat distance and membrane thickening observed for TisB, demonstrate that the concept of peptide-induced membrane thinning cannot be generalized. Instead, these results suggest that different factors contribute to the resulting changes in membrane thickness, such as the peptide orientation in the bilayer, and/or bilayer adaptation to hydrophobic mismatch.
Collapse
Affiliation(s)
- Stephan L Grage
- Karlsruhe Institute of Technology, Institute of Biological Interfaces Karlsruhe, Germany
| | - Sergii Afonin
- Karlsruhe Institute of Technology, Institute of Biological Interfaces Karlsruhe, Germany
| | - Sezgin Kara
- Karlsruhe Institute of Technology, Institute of Organic Chemistry Karlsruhe, Germany
| | - Gernot Buth
- Karlsruhe Institute of Technology, Institute for Accelerator Physics and Technology Karlsruhe, Germany
| | - Anne S Ulrich
- Karlsruhe Institute of Technology, Institute of Biological InterfacesKarlsruhe, Germany; Karlsruhe Institute of Technology, Institute of Organic ChemistryKarlsruhe, Germany
| |
Collapse
|
15
|
Grau-Campistany A, Strandberg E, Wadhwani P, Rabanal F, Ulrich AS. Extending the Hydrophobic Mismatch Concept to Amphiphilic Membranolytic Peptides. J Phys Chem Lett 2016; 7:1116-1120. [PMID: 26963560 DOI: 10.1021/acs.jpclett.6b00136] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
A series of nine amphiphilic, pore-forming α-helical KIA peptides (KIAGKIA repeats) with lengths between 14 and 28 residues were studied by solid-state (15)N NMR to determine their alignment in oriented lipid bilayers. In a 2:1 mixture of 1,2-dimyristoyl-sn-glycero-3-phosphatidylcholine (DMPC) with its corresponding 1-myristoyl-2-hydroxy-sn-glycero-3-phosphocholine (lyso-MPC), which has a highly positive spontaneous curvature, the helix tilt angle was found to vary steadily with peptide length. The shortest peptide was aligned transmembrane and upright, while the longer ones successively became tilted away from the membrane normal. This behavior is in agreement with the hydrophobic matching concept, conceived so far only for hydrophobic helices. In 1,2-dioleoyl-sn-glycero-3-phosphatidylcholine, with a negative spontaneous curvature, all KIA peptides remained flat on the bilayer surface, while the cylindrical DMPC lipids permitted a slight tilt. Peptide insertion thus depends critically on the intrinsic lipid curvature, and helix orientation is then fine-tuned by membrane thickness. A refined toroidal pore model is proposed.
Collapse
Affiliation(s)
- Ariadna Grau-Campistany
- Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology (KIT) , POB 3640, 76021 Karlsruhe, Germany
- Departament de Química Orgànica, Facultat de Química, Universitat de Barcelona , Barcelona, Spain
| | - Erik Strandberg
- Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology (KIT) , POB 3640, 76021 Karlsruhe, Germany
| | - Parvesh Wadhwani
- Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology (KIT) , POB 3640, 76021 Karlsruhe, Germany
| | - Francesc Rabanal
- Departament de Química Orgànica, Facultat de Química, Universitat de Barcelona , Barcelona, Spain
| | - Anne S Ulrich
- Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology (KIT) , POB 3640, 76021 Karlsruhe, Germany
- Institute of Organic Chemistry , KIT , Fritz-Haber-Weg 6, 76131 Karlsruhe, Germany
| |
Collapse
|