Zhang XY, Shi L, Liu Y, Tian F, Zhao HT, Miao XP, Huang ML, Zhu XY. ICPS: an integrative cancer profiler system.
Bioinformatics 2010;
26:2649-50. [PMID:
20736342 DOI:
10.1093/bioinformatics/btq487]
[Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
UNLABELLED
Founded upon the database of 570 public signatures, ICPS is a web-based application to obtain biomarker profiles among 11 common cancers by integrating genomic alterations with transcription signatures on the basis of a previously developed integrative pipeline. ICPS supports both public data and user's in-house data, and performs meta-analysis at a cancer subtype level by combining heterogeneous datasets. Finally, ICPS returns the robust gene signature containing potential cancer biomarkers that may be useful to carcinogenesis study and clinical cancer diagnosis.
AVAILABILITY
http://server.bioicps.org
CONTACT
zhxy@mail.tsinghua.edu.cn; zxy-dcs@mail.tsinghua.edu.cn
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