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Kumar V, Bahuguna A, Kim M. Molecular insights into binding of bioactive compounds from essential oil of Trachyspermum ammi with human programmed cell death protein 1. J Biomol Struct Dyn 2024; 42:6871-6881. [PMID: 37477253 DOI: 10.1080/07391102.2023.2236709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2023] [Accepted: 07/10/2023] [Indexed: 07/22/2023]
Abstract
The human programmed cell death protein 1 (PD-1) is expressed on the surface of T cells and contributes significantly to tumor immunity. Herein, six major compounds (carvacrol, thymol, β-phellandrene, α-terpinene, myrcene D, and α-pinene) from Trachyspermum ammi were studied for their intermolecular interactions and stability against PD-1. All tested compounds displayed docking energy (-4.2 to -3.7 kcal/mol) with PD-1. The highest docking scores of -4.2 and -4.1 kcal/mol were recorded for carvacrol and thymol, respectively. Also, a 100 ns molecular dynamics simulation predicted the stability of carvacrol- and thymol-docked PD-1 complex. Maximum of < 30 Å and < 12 Å root-mean-square deviation were observed for carvacrol and thymol at the end of the 100 ns simulation with respect to protein (Cα atoms), indicating retention and displacement of carvacrol and thymol from the initial binding pocket, respectively. Moreover, the endpoint binding free energies support the higher binding affinity of carvacrol (-22.87 ± 5.52 kcal/mol) than thymol (-16.83 ± 1.30 kcal/mol). The equicrural states of the respective ligands were supported by the respective root mean square fluctuation, where no significant deviations in the atoms of the ligands were observed. These findings suggest that carvacrol and thymol inhibit the PD-1/PD-L1 axis.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Vishal Kumar
- Department of Food Science and Technology, Yeungnam University, Gyeongsan, Gyeongsangbuk-do, Republic of Korea
| | - Ashutosh Bahuguna
- Department of Food Science and Technology, Yeungnam University, Gyeongsan, Gyeongsangbuk-do, Republic of Korea
| | - Myunghee Kim
- Department of Food Science and Technology, Yeungnam University, Gyeongsan, Gyeongsangbuk-do, Republic of Korea
- Institute of Cell Culture, Yeungnam University, Gyeongsan-si, Republic of Korea
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de Oliveira Lopes AL, Neves de Andrade CC, Sousa Duarte S, Gadelha Marques KK, Ramos Marques de Souza R, de Lourdes Assunção Araújo de Azevedo F, Fechine Tavares J, Dos Santos Golzio S, Ramos Gonçalves JC, Sobral MV. Assessment of the in Vitro Antimelanoma Potential of Lippia microphylla Cham (Verbenaceae) Essential Oil. Chem Biodivers 2023; 20:e202300717. [PMID: 37867470 DOI: 10.1002/cbdv.202300717] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Revised: 10/16/2023] [Accepted: 10/19/2023] [Indexed: 10/24/2023]
Abstract
Essential oils stand out among natural products for their complex composition, frequently described in the literature with a range of biological effects. This study evaluated the cytotoxic activity against several human cancer cell lines of essential oils extracted from the leaves of Lippia microphylla (EO-LM) Cham. (Verbenaceae). The melanoma cell line SK-MEL-28 was the most sensitive to the EO-LM, presenting an IC50 of 33.38±1.16 μg/mL. Afterward, the effects of EO-LM on the cell cycle, induction of apoptosis, and production of reactive oxygen species (ROS) were evaluated. We stated a significant increase in the sub-G1 population, indicating apoptosis, later confirmed by an increase of SK-MEL-28 cells labeled with Annexin V-FITC and by the formation of apoptotic bodies and membrane blebs, observed by confocal microscopy. Additionally, EO-LM reduced the production of ROS, indicating antioxidant activity. Therefore, EO-LM exhibits anti-melanoma activity in vitro, suggesting its potential as an anticancer agent.
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Affiliation(s)
- Ana Luiza de Oliveira Lopes
- Post Graduation Program in Bioactive Natural and Synthetic Products, Federal University of Paraíba, CEP 58051-900, João Pessoa, PB, Brazil
| | - Camyla Caroliny Neves de Andrade
- Post Graduation Program in Bioactive Natural and Synthetic Products, Federal University of Paraíba, CEP 58051-900, João Pessoa, PB, Brazil
| | - Sâmia Sousa Duarte
- Post Graduation Program in Bioactive Natural and Synthetic Products, Federal University of Paraíba, CEP 58051-900, João Pessoa, PB, Brazil
| | - Karinne Kelly Gadelha Marques
- Post Graduation Program in Bioactive Natural and Synthetic Products, Federal University of Paraíba, CEP 58051-900, João Pessoa, PB, Brazil
| | - Ramon Ramos Marques de Souza
- Post Graduation Program in Bioactive Natural and Synthetic Products, Federal University of Paraíba, CEP 58051-900, João Pessoa, PB, Brazil
| | | | - Josean Fechine Tavares
- Post Graduation Program in Bioactive Natural and Synthetic Products, Federal University of Paraíba, CEP 58051-900, João Pessoa, PB, Brazil
- Department of Pharmaceutical Sciences, Federal University of Paraíba, CEP, 58051-900, João Pessoa, PB, Brazil
| | - Sócrates Dos Santos Golzio
- Post Graduation Program in Bioactive Natural and Synthetic Products, Federal University of Paraíba, CEP 58051-900, João Pessoa, PB, Brazil
- Department of Pharmaceutical Sciences, Federal University of Paraíba, CEP, 58051-900, João Pessoa, PB, Brazil
| | - Juan Carlos Ramos Gonçalves
- Post Graduation Program in Bioactive Natural and Synthetic Products, Federal University of Paraíba, CEP 58051-900, João Pessoa, PB, Brazil
- Department of Pharmaceutical Sciences, Federal University of Paraíba, CEP, 58051-900, João Pessoa, PB, Brazil
| | - Marianna Vieira Sobral
- Post Graduation Program in Bioactive Natural and Synthetic Products, Federal University of Paraíba, CEP 58051-900, João Pessoa, PB, Brazil
- Department of Pharmaceutical Sciences, Federal University of Paraíba, CEP, 58051-900, João Pessoa, PB, Brazil
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In-Depth Study of Thymus vulgaris Essential Oil: Towards Understanding the Antibacterial Target Mechanism and Toxicological and Pharmacological Aspects. BIOMED RESEARCH INTERNATIONAL 2022; 2022:3368883. [PMID: 35909468 PMCID: PMC9334058 DOI: 10.1155/2022/3368883] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Accepted: 07/05/2022] [Indexed: 11/30/2022]
Abstract
Questions have been raised apropos the emerging problem of microbial resistance, which may pose a great hazard to the human health. Among biosafe compounds are essential oils which captured consumer draw due to their multifunctional properties compared to chemical medication drugs. Here, we examined the chemical profile and the mechanism(s) of action of the Thymus vulgaris essential oil (TVEO) against a Gram-negative bacterium Salmonella enterica Typhimurium ATTCC 10028 (S. enterica Typhimurium ATTCC 10028) and two Gram-positive bacteria Staphyloccocus aureus ATCC 6538 (S. aureus ATCC 6538) and Listeria monocytogenes ATCC 19117 (L. monocytogenes ATCC 19117). Findings showed that TVEO was principally composed of thymol, o-cymene, and γ-terpinene with 47.44, 16.55, and 7.80%, respectively. Molecular docking simulations stipulated that thymol and β-sesquiphellandrene (a minor compound at 1.37%) could target multiple bacterial pathways including topoisomerase II and DNA and RNA polymerases of the three tested bacteria. This result pointed plausible impairments of the pathogenic bacteria cell replication and transcription processes. Through computational approach, the VEGA quantitative structure–activity relationship (QSAR) model, we revealed that among twenty-six TVEO compounds, sixteen had no toxic effects and could be safe for human consumption as compared to the Food and Drug Administration (FDA) approved drugs (ciprofloxacin and rifamycin SV). Assessed by the SwissADME server, the pharmacokinetic profile of all identified TVEO compounds define their absorption, distribution, metabolism, and excretion (ADME) properties and were assessed. In order to predict their biological activity spectrum based on their chemical structure, all TVEO compounds were subjected to PASS (Prediction of Activity Spectra for Substances) online tool. Results indicated that the tested compounds could have multiple biological activities and various enzymatic targets. Findings of our study support that identified compounds of TVEO can be a safe and effective alternative to synthetic drugs and can easily combats hazardous multidrug-resistant bacteria.
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Roshan AA, Hathout RM, El-Ahmady SH, Singab AB, Gad HA. Breaking the challenge of polyherbal quality control using UV and HPLC fingerprints combined with multivariate analysis. PHYTOCHEMICAL ANALYSIS : PCA 2022; 33:320-330. [PMID: 34708476 DOI: 10.1002/pca.3089] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Revised: 09/02/2021] [Accepted: 09/04/2021] [Indexed: 06/13/2023]
Abstract
INTRODUCTION Traditional herbal medicines are mostly composed of more than one herb which act synergistically; hence, there is high demand for proper quality control methods to ensure the consistent quality of polyherbal formulations. AIMS Proposing a simple, reliable, and efficient method for the qualitative and quantitative analysis of a polyherbal product using multivariate analysis of ultraviolet-visible (UV-Vis) spectroscopy or HPLC-PDA data. METHODOLOGY An antiobesity formula consisting of equal proportions of Trachyspermum ammi, Cuminum cyminum, and Origanum majorana was prepared as well as spiked with one of each herb simultaneously, representing accepted and unaccepted samples. Full factorial design (2k ) was applied to study the effect of temperature, sonication, and stirring time for extraction optimisation. The HPLC and UV spectral fingerprints were separately subjected to multivariate analysis. The soft independent modelling of class analogy (SIMCA) and partial least squares (PLS) models were developed to segregate the accepted from the unaccepted samples and to predict the herbal composition in addition to the thymol content in each sample. RESULTS The SIMCAuv and SIMCAhplc models showed correct discrimination between the accepted and unaccepted samples with excellent selectivity and sensitivity. The PLSuv , PLShplc , and PLSthym models showed excellent linearity and accuracy with R2 > 0.98, slope close to 1, intercept close to 0, low root mean square error of calibration (RMSEC), and root mean square error of prediction (RMSEP) (close to 0). On validation, the PLS models correctly predicted the quantity of the three herbs and thymol content with ±5% accuracy. CONCLUSION This study demonstrates the reliability and efficiency of HPLC and UV spectroscopy coupled with multivariate statistical analysis (MVA) for ensuring the consistency of polyherbal preparations.
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Affiliation(s)
- Abdulrahman A Roshan
- Department of Pharmacognosy, Faculty of Pharmacy, Ain Shams University, Cairo, Egypt
- Department of Pharmacognosy, Faculty of Pharmacy, University of Aden, Aden, Yemen
| | - Rania M Hathout
- Department of Pharmaceutics, Faculty of Pharmacy, Ain Shams University, Cairo, Egypt
| | - Sherweit H El-Ahmady
- Department of Pharmacognosy, Faculty of Pharmacy, Ain Shams University, Cairo, Egypt
| | - Abdelnasser B Singab
- Department of Pharmacognosy, Faculty of Pharmacy, Ain Shams University, Cairo, Egypt
| | - Haidy A Gad
- Department of Pharmacognosy, Faculty of Pharmacy, Ain Shams University, Cairo, Egypt
- Department of Pharmacognosy, Faculty of Pharmacy, King Salman International University, South Sinai, Egypt
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Nanoemulsions of Trachyspermum copticum, Mentha pulegium and Satureja hortensis essential oils: formulation, physicochemical properties, antimicrobial and antioxidant efficiency. JOURNAL OF FOOD MEASUREMENT AND CHARACTERIZATION 2022. [DOI: 10.1007/s11694-022-01294-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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Lee JH, Lee YY, Lee J, Jang YJ, Jang HW. Chemical Composition, Antioxidant, and Anti-Inflammatory Activity of Essential Oil from Omija ( Schisandra chinensis (Turcz.) Baill.) Produced by Supercritical Fluid Extraction Using CO 2. Foods 2021; 10:foods10071619. [PMID: 34359489 PMCID: PMC8304754 DOI: 10.3390/foods10071619] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 07/05/2021] [Accepted: 07/07/2021] [Indexed: 12/18/2022] Open
Abstract
Schisandra chinensis (Turcz.) Baill., which is known as omija in South Korea, is mainly cultivated in East Asia. The present study aimed to investigate the chemical composition of essential oil from the omija (OMEO) fruit obtained by supercritical fluid extraction using CO2 and to confirm the antioxidant and anti-inflammatory activity of OMEO using HaCaT human keratinocyte and RAW 264.7 murine macrophages. As a result of the chemical composition analysis of OMEO using gas chromatography-mass spectrometry, a total of 41 compounds were identified. The detailed analysis results are sesquiterpenoids (16), monoterpenoids (14), ketones (4), alcohols (3), aldehydes (2), acids (1), and aromatic hydrocarbons (1). OMEO significantly reduced the increased ROS levels in HaCaT keratinocytes induced by UV-B irradiation (p < 0.05). It was confirmed that 5 compounds (α-pinene, camphene, β-myrcene, 2-nonanone, and nerolidol) present in OMEO exhibited inhibitory activity on ROS production. Furthermore, OMEO showed excellent anti-inflammatory activity in RAW 264.7 macrophages induced by lipopolysaccharide. OMEO effectively inhibited NO production (p < 0.05) by suppressing the expression of the iNOS protein. Finally, OMEO was investigated for exhibition of anti-inflammatory activity by inhibiting the activation of NF-κB pathway. Taken together, OMEO could be used as a functional food ingredient with excellent antioxidant and anti-inflammatory activity.
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Affiliation(s)
- Jae-Hoon Lee
- Korea Food Research Institute, 245 Nongsaengmyeong-ro, Iseo-myeon, Wanju-Gun, Jeollabuk-do 55365, Korea
| | - Yun-Yeol Lee
- Korea Food Research Institute, 245 Nongsaengmyeong-ro, Iseo-myeon, Wanju-Gun, Jeollabuk-do 55365, Korea
| | - Jangho Lee
- Korea Food Research Institute, 245 Nongsaengmyeong-ro, Iseo-myeon, Wanju-Gun, Jeollabuk-do 55365, Korea
| | - Young-Jin Jang
- Major of Food Science & Technology, Seoul Women's University, Seoul 01797, Korea
| | - Hae-Won Jang
- Department of Food Science and Biotechnology, Sungshin Women's University, Seoul 01133, Korea
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do Nascimento LD, Silva SG, Cascaes MM, da Costa KS, Figueiredo PLB, Costa CML, Andrade EHDA, de Faria LJG. Drying Effects on Chemical Composition and Antioxidant Activity of Lippia thymoides Essential Oil, a Natural Source of Thymol. Molecules 2021; 26:molecules26092621. [PMID: 33946153 PMCID: PMC8124978 DOI: 10.3390/molecules26092621] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Revised: 03/07/2021] [Accepted: 03/10/2021] [Indexed: 11/28/2022] Open
Abstract
Leaves of Lippia thymoides (Verbenaceae) were dried in an oven at 40, 50 and 60 °C and the kinetic of drying and the influence of the drying process on the chemical composition, yield, and DPPH radical scavenging activity of the obtained essential oils were evaluated. The composition of the essential oils was determined with gas chromatography-mass spectrometry and gas chromatography-flame ionization detection analyses. The influence of drying on the chemical composition of the essential oils of L. thymoides was evaluated by multivariate analysis, and their antioxidant activity was investigated via the 2,2-diphenyl-1-picrylhydrazyl (DPPH) assay. The Midilli model was the most appropriate to describe the behavior of drying kinetic data of L. thymoides leaves. Thymol was the major compound for all analyzed conditions; the maximum content was obtained from fresh leaves (62.78 ± 0.63%). The essential oils showed DPPH radical scavenging activity with an average of 73.10 ± 12.08%, and the fresh leaves showed higher inhibition (89.97 ± 0.31%). This is the first study to evaluate the influence of drying on the chemical composition and antioxidant activity of L. thymoides essential oils rich in thymol.
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Affiliation(s)
- Lidiane Diniz do Nascimento
- Programa de Pós-Graduação em Engenharia de Recursos Naturais da Amazônia, Universidade Federal do Pará, Belém 66075-110, Pará, Brazil;
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Belém 66077-830, Pará, Brazil;
- Correspondence: (L.D.d.N.); (K.S.d.C.); Tel.: +55-91-3217-6086 (L.D.d.N.); +55-93-2101-6771 (K.S.d.C.)
| | - Sebastião Gomes Silva
- Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará, Belém 66075-110, Pará, Brazil;
| | - Márcia Moraes Cascaes
- Programa de Pós-Graduação em Química, Universidade Federal do Pará, Belém 66075-110, Pará, Brazil;
| | - Kauê Santana da Costa
- Faculdade de Biotecnologia, Instituto de Biodiversidade, Universidade Federal do Oeste do Pará, Santarém 68035-110, Pará, Brazil
- Correspondence: (L.D.d.N.); (K.S.d.C.); Tel.: +55-91-3217-6086 (L.D.d.N.); +55-93-2101-6771 (K.S.d.C.)
| | | | - Cristiane Maria Leal Costa
- Programa de Pós-Graduação em Engenharia Química, Universidade Federal do Pará, Belém 66075-110, Pará, Brazil;
| | - Eloisa Helena de Aguiar Andrade
- Coordenação de Botânica, Museu Paraense Emílio Goeldi, Belém 66077-830, Pará, Brazil;
- Programa de Pós-Graduação em Química, Universidade Federal do Pará, Belém 66075-110, Pará, Brazil;
| | - Lênio José Guerreiro de Faria
- Programa de Pós-Graduação em Engenharia de Recursos Naturais da Amazônia, Universidade Federal do Pará, Belém 66075-110, Pará, Brazil;
- Programa de Pós-Graduação em Engenharia Química, Universidade Federal do Pará, Belém 66075-110, Pará, Brazil;
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Siahbalaei R, Kavoosi G, Shakeri R. In vitro antioxidant and antidiabetic activity of essential oils encapsulated in gelatin-pectin particles against sugar, lipid and protein oxidation and amylase and glucosidase activity. Food Sci Nutr 2020; 8:6457-6466. [PMID: 33312531 PMCID: PMC7723207 DOI: 10.1002/fsn3.1935] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Revised: 09/16/2020] [Accepted: 09/19/2020] [Indexed: 12/24/2022] Open
Abstract
The in vitro antioxidant and antidiabetic activities of Oliveria decumbens, Thymus kotschyanus, Trachyspermum ammi, and Zataria multiflora essential oils incorporated into gelatin-pectin composite were investigated. The gas chromatography-mass spectrometry characterization revealed that thymol (1.2%-86.4%), carvacrol (3.2%-52.4%), gamma-terpinene (0.0%-12.7%), para-cymene (3.2%-5.2%), geraniol (0.0%-14.5%), and spathulenol (0.0%-13.6%) are the major constituents of the essential oils. Gelatin-pectin composite incorporated with the essential oils exhibited acidic pH (2.40-3.04), low conductivity (265-278 µS/cm), low surface tension (19.0-23.5 mN/m), low Newtonian viscosity (23.7-28.5 mPa.s), negative zeta-potential (14.2-16.9 mV), and nanoscale particle size (313-336 nm). These rheological properties result in the production of globular gelatin-pectin nanoparticles with a size range of 500-700 nm. The FTIR spectra of gelatin-pectin and gelatin-pectin-essential oils to some extent were similar, suggesting the noncovalent interactions between them. Gelatin-pectin composite incorporated with the essential oils displayed antiglucose oxidation (130-150 µg/ml) antilipid peroxidation (120-130 µg/ml), antiprotein oxidation (150-168 µg/ml), and antiprotein glycation (145-170 µg/ml) as well as antiamylase (216-230 µg/ml), and antiglucosidase (212-238 µg/ml) activity. The essential oils strongly improved the antioxidant capacity of the gelatin-pectin composite so strongly which can be recommended as a natural compound for oxidative stress management.
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Affiliation(s)
- Roghayeh Siahbalaei
- Institute of Biotechnology, School of AgricultureShiraz UniversityShirazIslamic Republic of Iran
| | - Gholamreza Kavoosi
- Institute of Biotechnology, School of AgricultureShiraz UniversityShirazIslamic Republic of Iran
| | - Raheleh Shakeri
- Department of Biological Sciences and BiotechnologyFaculty of SciencesUniversity of KurdistanSanandajIran
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