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For: Aris H, Borhani S, Cahn D, O'Donnell C, Tan E, Xu P. Modeling transcriptional factor cross-talk to understand parabolic kinetics, bimodal gene expression and retroactivity in biosensor design. Biochem Eng J 2019. [DOI: 10.1016/j.bej.2019.02.005] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Number Cited by Other Article(s)
1
Gyorgy A. A Practical Step-by-Step Guide for Quantifying Retroactivity in Gene Networks. Methods Mol Biol 2021;2229:293-311. [PMID: 33405228 DOI: 10.1007/978-1-0716-1032-9_14] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
2
Edwards H, Xu P. Unstructured kinetic models to simulate an arabinose switch that decouples cell growth from metabolite production. Synth Syst Biotechnol 2020;5:222-229. [PMID: 32695893 PMCID: PMC7364165 DOI: 10.1016/j.synbio.2020.07.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2020] [Revised: 06/10/2020] [Accepted: 07/08/2020] [Indexed: 11/23/2022]  Open
3
Marsafari M, Ma J, Koffas M, Xu P. Genetically-encoded biosensors for analyzing and controlling cellular process in yeast. Curr Opin Biotechnol 2020;64:175-182. [PMID: 32563963 DOI: 10.1016/j.copbio.2020.04.006] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2019] [Revised: 02/29/2020] [Accepted: 04/20/2020] [Indexed: 12/17/2022]
4
Xu P. Branch point control at malonyl-CoA node: A computational framework to uncover the design principles of an ideal genetic-metabolic switch. Metab Eng Commun 2020;10:e00127. [PMID: 32455112 PMCID: PMC7236061 DOI: 10.1016/j.mec.2020.e00127] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2019] [Revised: 04/01/2020] [Accepted: 04/04/2020] [Indexed: 01/10/2023]  Open
5
Xu P. Analytical solution for a hybrid Logistic-Monod cell growth model in batch and continuous stirred tank reactor culture. Biotechnol Bioeng 2020;117:873-878. [PMID: 31758551 PMCID: PMC7027892 DOI: 10.1002/bit.27230] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2019] [Revised: 11/17/2019] [Accepted: 11/20/2019] [Indexed: 12/17/2022]
6
Wan X, Marsafari M, Xu P. Engineering metabolite-responsive transcriptional factors to sense small molecules in eukaryotes: current state and perspectives. Microb Cell Fact 2019;18:61. [PMID: 30914048 PMCID: PMC6434827 DOI: 10.1186/s12934-019-1111-3] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2019] [Accepted: 03/20/2019] [Indexed: 11/18/2022]  Open
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