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Sun Q, Shen L, Zhang BL, Yu J, Wei F, Sun Y, Chen W, Wang S. Advance on Engineering of Bacteriophages by Synthetic Biology. Infect Drug Resist 2023; 16:1941-1953. [PMID: 37025193 PMCID: PMC10072152 DOI: 10.2147/idr.s402962] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Accepted: 03/16/2023] [Indexed: 04/03/2023] Open
Abstract
Since bacteriophages (phages) were firstly reported at the beginning of the 20th century, the study on them experiences booming-fading-emerging with discovery and overuse of antibiotics. Although they are the hotspots for therapy of antibiotic-resistant strains nowadays, natural phage applications encounter some challenges such as limited host range and bacterial resistance to phages. Synthetic biology, one of the most dramatic directions in the recent 20-years study of microbiology, has generated numerous methods and tools and has contributed a lot to understanding phage evolution, engineering modification, and controlling phage-bacteria interactions. In order to better modify and apply phages by using synthetic biology techniques in the future, in this review, we comprehensively introduce various strategies on engineering or modification of phage genome and rebooting of recombinant phages, summarize the recent researches and potential directions of phage synthetic biology, and outline the current application of engineered phages in practice.
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Affiliation(s)
- Qingqing Sun
- Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi’an, 710069, People’s Republic of China
| | - Lixin Shen
- Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi’an, 710069, People’s Republic of China
| | - Bai-Ling Zhang
- Department of Laboratory Medicine, The Second Affiliated Hospital of Nanchang University, Nanchang, 330006, People’s Republic of China
| | - Jiaoyang Yu
- Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi’an, 710069, People’s Republic of China
- Clinical Research Center, the Second Hospital of Nanjing, Nanjing University of Chinese Medicine, Nanjing, 210003, People’s Republic of China
| | - Fu Wei
- Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi’an, 710069, People’s Republic of China
| | - Yanmei Sun
- Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi’an, 710069, People’s Republic of China
| | - Wei Chen
- Clinical Research Center, the Second Hospital of Nanjing, Nanjing University of Chinese Medicine, Nanjing, 210003, People’s Republic of China
- The Clinical Infectious Disease Center of Nanjing, Nanjing, 210003, People’s Republic of China
- Correspondence: Wei Chen; Shiwei Wang, Email ;
| | - Shiwei Wang
- Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology of Shaanxi Province, the College of Life Sciences, Northwest University, Xi’an, 710069, People’s Republic of China
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Zuo P, Metz J, Yu P, Alvarez PJJ. Biofilm-responsive encapsulated-phage coating for autonomous biofouling mitigation in water storage systems. WATER RESEARCH 2022; 224:119070. [PMID: 36096027 DOI: 10.1016/j.watres.2022.119070] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 08/26/2022] [Accepted: 09/05/2022] [Indexed: 06/15/2023]
Abstract
Biofilms in water storage systems may harbor pathogens that threaten public health. Chemical disinfectants are marginally effective in eradicating biofilms due to limited penetration, and often generate harmful disinfection byproducts. To enhance biofouling mitigation in household water storage tanks, we encapsulated bacteriophages (phages) in chitosan crosslinked with tri-polyphosphate and 3-glycidoxypropyltrimethoxysilane. Phages served as self-propagating green biocides that exclusively infect bacteria. This pH-responsive encapsulation (244 ± 11 nm) enabled autonomous release of phages in response to acidic pH associated with biofilms (corroborated by confocal microscopy with pH-indicator dye SNARF-4F), but otherwise remained stable in pH-neutral tap water for one month. Encapsulated phages instantly bind to plasma-treated plastic and fiberglass surfaces, providing a facile coating method that protects surfaces highly vulnerable to biofouling. Biofilm formation assays were conducted in tap water amended with 200 mg/L glucose to accelerate growth and attachment of Pseudomonas aeruginosa, an opportunistic pathogen commonly associated with biofilms in drinking water distribution and storage systems. Biofilms formation on plastic surfaces coated with encapsulated phages decreased to only 6.7 ± 0.2% (on a biomass basis) relative to the uncoated controls. Likewise, biofilm surface area coverage (4.8 ± 0.2 log CFU/mm2) and live/dead fluorescence ratio (1.80) were also lower than the controls (6.6 ± 0.2 log CFU/mm2 and live/dead ratio of 11.05). Overall, this study offers proof-of-concept of a chemical-free, easily implementable approach to control problematic biofilm-dwelling bacteria and highlights benefits of this bottom-up biofouling control approach that obviates the challenge of poor biofilm penetration by biocides.
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Affiliation(s)
- Pengxiao Zuo
- Department of Civil and Environmental Engineering, Rice University, Houston, USA; Nanosystems Engineering Research Center for Nanotechnology-Enabled Water Treatment, USA
| | - Jordin Metz
- Department of Chemistry, Rice University, Houston, USA; Nanosystems Engineering Research Center for Nanotechnology-Enabled Water Treatment, USA
| | - Pingfeng Yu
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Pedro J J Alvarez
- Department of Civil and Environmental Engineering, Rice University, Houston, USA; Department of Chemistry, Rice University, Houston, USA; Nanosystems Engineering Research Center for Nanotechnology-Enabled Water Treatment, USA.
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Sarker MAR, Ahn YH. Green phytoextracts as natural photosensitizers in LED-based photodynamic disinfection of multidrug-resistant bacteria in wastewater effluent. CHEMOSPHERE 2022; 297:134157. [PMID: 35245588 DOI: 10.1016/j.chemosphere.2022.134157] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Revised: 02/16/2022] [Accepted: 02/26/2022] [Indexed: 06/14/2023]
Abstract
The photodynamic treatment (PDT) process is a promising technology to control emerging pollutants and antimicrobial resistance problems in the water environment. The reactive oxygen species (ROS) produced when natural and nontoxic photosensitizers (PS) are exposed to light are the key functional components of the PDT process that can effectively achieve microbial inactivation with minimal negative impact. This study examined the application of green phytoextracts from two plants, Chamaecyparis obtusa and Moringa oleifera, as natural photosensitizers for the white light-emitting diode (LED) based photodynamic disinfection of multidrug-resistant (MDR) and total coliforms (TC) from secondary effluent in full-scale municipal wastewater treatment plants. Gas chromatography-mass spectrometry and Fourier transform infrared spectroscopy showed that the phytoextracts contained 57 compounds, particularly aromatic and phenolic hydroxyl compounds. The phytoextracts showed an excellent activity as a PS compared to the intrinsic antibacterial effect. Under a light intensity of 17 mW/cm2, the complete inactivation (6.55 Log CFU/mL) was observed at an irradiation time of 100 min for Escherichia coli ART-2 and 80 min for Staphylococcus aureus, meaning that E. coli was resistant. The light intensity was an important factor influencing photodynamic disinfection. For the complete disinfection of TC satisfying the water reclamation regulation, the irradiation time requirement was 20 min under a light intensity of 80 mW/cm2. During the photodynamic reaction, a significant amount of ROS was generated from the phytoextracts as the light irradiation time was increased. The major ROS was singlet oxygen (1O2, Type II) during the initial 40 min of reaction time and hydroxyl radical (•OH, Type I) after 40 min until complete inactivation.
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Affiliation(s)
- M A Rashid Sarker
- Department of Civil Engineering, Yeungnam University, Gyeongsan, 38541, Republic of Korea; Department of Agricultural Construction and Environmental Engineering, Sylhet Agricultural University, Sylhet, 3100, Bangladesh
| | - Young-Ho Ahn
- Department of Civil Engineering, Yeungnam University, Gyeongsan, 38541, Republic of Korea.
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Growth characteristics of lytic cyanophages newly isolated from the Nakdong River, Korea. Virus Res 2021; 306:198600. [PMID: 34648883 DOI: 10.1016/j.virusres.2021.198600] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Revised: 10/03/2021] [Accepted: 10/04/2021] [Indexed: 11/20/2022]
Abstract
Cyanophages are primary regulators of cyanobacterial harmful algal blooms (CyanoHABs), and they control host cyanobacterial dynamics, frequency, and diversity in the aquatic environment. This study deals with growth characteristics of three lytic cyanophages, Myoviridae AGM-1, Myoviridae NGM-1, and Podoviridae NDP-1, newly isolated from the Nakdong River in South Korea. These isolates are capable of infecting Amazoninema brasiliense, Nododsilinea nodulosa, and Nostoc sp. The results showed that abiotic parameters such as water temperature and pH balance significantly affect the growth of a cyanophage and the interaction with its host in the aquatic environment. The optimal growth conditions of the newly isolated cyanophages are less than 37 °C and pH 9, whereas optimal conditions are 25-30 °C and pH 7 for the cyanobacteria used as hosts. However, each cyanophage was found to have significantly different growth characteristics in phage titer, latent period, and burst size, depending on the characteristics of the species. Among the three cyanophages, Podoviridae NDP-1 showed the highest burst size and infection activity. The lower the designed multiplicity of infection (MOI) ratio (0.01 to 10), the longer it takes to lyse the host cells. The minimum MOI value for sustainable biocontrol of CyanoHABs is proposed as MOI=1. These results can be used as basic information in further studies, such as pyophage control of CyanoHABs and enrichment of cyanophages with high activity.
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