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Mondal S, Banerjee S, Dey D, Lahiri H, Mana T, Jana SS, Mukhopadhyay R. Impact of HMGB1 binding on the structural alterations of platinum drug-treated single dsDNA molecule. Biochimie 2023; 213:168-175. [PMID: 37211256 DOI: 10.1016/j.biochi.2023.05.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Revised: 04/24/2023] [Accepted: 05/18/2023] [Indexed: 05/23/2023]
Abstract
High mobility group B1 (HMGB1) is an architectural protein that recognizes the DNA damage sites formed by the platinum anticancer drugs. However, the impact of HMGB1 binding on the structural alterations of the platinum drug-treated single dsDNA molecules has remained largely unknown. Herein, the structural alterations induced by the platinum drugs, the mononuclear cisplatin and it's analog the trinuclear BBR3464, have been probed in presence of HMGB1, by atomic force microscopy (AFM) and AFM-based force spectroscopy. It is observed that the drug-induced DNA loop formation enhanced upon HMGB1 binding, most likely as a result of HMGB1-induced increase in DNA conformational flexibility that allowed the drug-binding sites to come close and form double adducts, thereby resulting in enhanced loop formation via inter-helix cross-linking. Since HMGB1 enhances DNA flexibility, the near-reversible structural transitions as observed in the force-extension curves (for 1 h drug treatment), generally occurred at lower forces in presence of HMGB1. The DNA structural integrity was largely lost after 24 h drug treatment as no reversible transition could be observed. The Young's modulus of the dsDNA molecules, as estimated from the force-extension analysis, increased upon drug treatment, due to formation of the drug-induced covalent cross-links and consequent reduction in DNA flexibility. The Young's modulus increased further in presence of HMGB1 due to HMGB1-induced enhancement in DNA flexibility that could ease formation of the drug-induced covalent cross-links. To our knowledge, this is the first report that shows an increase in the stiffness of the platinum drug-treated DNA molecules in presence of HMGB1.
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Affiliation(s)
- Sourav Mondal
- School of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata, West Bengal, India
| | - Siddhartha Banerjee
- School of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata, West Bengal, India
| | - Debapriya Dey
- School of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata, West Bengal, India
| | - Hiya Lahiri
- School of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata, West Bengal, India
| | - Tanushree Mana
- School of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata, West Bengal, India
| | - Siddhartha S Jana
- School of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata, West Bengal, India
| | - Rupa Mukhopadhyay
- School of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata, West Bengal, India.
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Andrezálová L, Országhová Z. Covalent and noncovalent interactions of coordination compounds with DNA: An overview. J Inorg Biochem 2021; 225:111624. [PMID: 34653826 DOI: 10.1016/j.jinorgbio.2021.111624] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Revised: 08/30/2021] [Accepted: 09/28/2021] [Indexed: 12/26/2022]
Abstract
Deoxyribonucleic acid plays a central role in crucial cellular processes, and many drugs exert their effects through binding to DNA. Since the discovery of cisplatin and its derivatives considerable attention of researchers has been focused on the development of novel anticancer metal-based drugs. Transition metal complexes, due to their great diversity in size and structure, have a big potential to modify DNA through diverse types of interactions, making them the prominent class of compounds for DNA targeted therapy. In this review we describe various binding modes of metal complexes to duplex DNA based on covalent and noncovalent interactions or combination of both. Specific examples of each binding mode as well as possible cytotoxic effects of metal complexes in tumor cells are presented.
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Affiliation(s)
- Lucia Andrezálová
- Institute of Medical Chemistry, Biochemistry and Clinical Biochemistry, Faculty of Medicine, Comenius University, Sasinkova 2, 813 72 Bratislava, Slovakia; Department of Inorganic Chemistry, Faculty of Natural Sciences, Comenius University, Mlynská dolina, Ilkovičova 6, 842 15 Bratislava, Slovakia.
| | - Zuzana Országhová
- Institute of Medical Chemistry, Biochemistry and Clinical Biochemistry, Faculty of Medicine, Comenius University, Sasinkova 2, 813 72 Bratislava, Slovakia
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3
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Serebryanskaya TV, Kinzhalov MA, Bakulev V, Alekseev G, Andreeva A, Gushchin PV, Protas AV, Smirnov AS, Panikorovskii TL, Lippmann P, Ott I, Verbilo CM, Zuraev AV, Bunev AS, Boyarskiy VP, Kasyanenko NA. Water soluble palladium(ii) and platinum(ii) acyclic diaminocarbene complexes: solution behavior, DNA binding, and antiproliferative activity. NEW J CHEM 2020. [DOI: 10.1039/d0nj00060d] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Water soluble Pd(ii) and Pt(ii)–ADC species synthesized via the metal-mediated coupling of isocyanides and 1,2-diaminobenzene have demonstrated antitumor potential.
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Affiliation(s)
| | | | | | | | | | | | | | | | - Taras L. Panikorovskii
- Saint Petersburg State University
- St. Petersburg
- Russia
- Laboratory of Nature-Inspired Technologies and Environmental Safety of the Arctic
- Kola Science Centre
| | - Petra Lippmann
- Institute of Medicinal and Pharmaceutical Chemistry
- Technische Universität Braunschweig
- D-38106 Braunschweig
- Germany
| | - Ingo Ott
- Institute of Medicinal and Pharmaceutical Chemistry
- Technische Universität Braunschweig
- D-38106 Braunschweig
- Germany
| | - Cyril M. Verbilo
- Research Institute for Physical Chemical Problems
- Belarusian State University
- 220006 Minsk
- Belarus
| | - Alexander V. Zuraev
- Research Institute for Physical Chemical Problems
- Belarusian State University
- 220006 Minsk
- Belarus
| | - Alexander S. Bunev
- Medicinal Chemistry Center
- Togliatti State University
- 445020 Togliatti
- Russia
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4
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Cai L, Yu C, Ba L, Liu Q, Qian Y, Yang B, Gao C. Anticancer platinum-based complexes with non-classical structures. Appl Organomet Chem 2018. [DOI: 10.1002/aoc.4228] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Linxiang Cai
- Faculty of Life Science and Technology; Kunming University of Science and Technology; Kunming 650500 China
| | - Congtao Yu
- Faculty of Life Science and Technology; Kunming University of Science and Technology; Kunming 650500 China
| | - Linkui Ba
- Faculty of Life Science and Technology; Kunming University of Science and Technology; Kunming 650500 China
| | - Qinghua Liu
- Faculty of Life Science and Technology; Kunming University of Science and Technology; Kunming 650500 China
| | - Yunxu Qian
- Faculty of Life Science and Technology; Kunming University of Science and Technology; Kunming 650500 China
| | - Bo Yang
- Faculty of Life Science and Technology; Kunming University of Science and Technology; Kunming 650500 China
| | - Chuanzhu Gao
- Faculty of Life Science and Technology; Kunming University of Science and Technology; Kunming 650500 China
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5
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Brabec V, Hrabina O, Kasparkova J. Cytotoxic platinum coordination compounds. DNA binding agents. Coord Chem Rev 2017. [DOI: 10.1016/j.ccr.2017.04.013] [Citation(s) in RCA: 77] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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6
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Naziruddin AR, Lee CS, Lin WJ, Sun BJ, Chao KH, Chang AHH, Hwang WS. Platinum complexes bearing normal and mesoionic N-heterocyclic carbene based pincer ligands: syntheses, structures, and photo-functional attributes. Dalton Trans 2016; 45:5848-59. [DOI: 10.1039/c5dt04770f] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Platinum complexes featuring pyridine bis-N-heterocyclic imidazol-2-ylidene/triazol-5-ylidene donors are prepared and screened for vapo/mechanochromic attributes.
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Affiliation(s)
| | | | - Wan-Jung Lin
- National Dong Hwa University
- Hualien 97401
- Republic of China
| | - Bing-Jian Sun
- National Dong Hwa University
- Hualien 97401
- Republic of China
| | - Kang-Heng Chao
- National Dong Hwa University
- Hualien 97401
- Republic of China
| | | | - Wen-Shu Hwang
- National Dong Hwa University
- Hualien 97401
- Republic of China
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8
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Malina J, Farrell NP, Brabec V. DNA Condensing Effects and Sequence Selectivity of DNA Binding of Antitumor Noncovalent Polynuclear Platinum Complexes. Inorg Chem 2014; 53:1662-71. [DOI: 10.1021/ic402796k] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Jaroslav Malina
- Institute
of Biophysics, Academy of Sciences of the Czech Republic, v.v.i.,
Kralovopolska 135, CZ-61265 Brno, Czech Republic
| | - Nicholas P. Farrell
- Department
of Chemistry, Virginia Commonwealth University, Richmond, Virginia 23284-2006, United States
| | - Viktor Brabec
- Institute
of Biophysics, Academy of Sciences of the Czech Republic, v.v.i.,
Kralovopolska 135, CZ-61265 Brno, Czech Republic
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Manna A, Chakravorti S. Modification of a Styryl Dye Binding Mode with Calf Thymus DNA in Vesicular Medium: From Minor Groove to Intercalative. J Phys Chem B 2012; 116:5226-33. [DOI: 10.1021/jp301211m] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Anamika Manna
- Department of Spectroscopy, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
| | - Sankar Chakravorti
- Department of Spectroscopy, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
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10
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Banerjee T, Dubey P, Mukhopadhyay R. DNA compaction by mononuclear platinum cancer drug cisplatin and the trisplatinum anticancer agent BBR3464: Differences and similarities. Biochimie 2012; 94:494-502. [DOI: 10.1016/j.biochi.2011.08.018] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2011] [Accepted: 08/24/2011] [Indexed: 10/17/2022]
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11
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Gao C, Xu G, Gou S. Antitumor dinuclear platinum(II) complexes derived from a novel chiral ligand. Bioorg Med Chem Lett 2011; 21:6386-8. [DOI: 10.1016/j.bmcl.2011.08.100] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2011] [Revised: 08/15/2011] [Accepted: 08/24/2011] [Indexed: 12/01/2022]
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12
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Gál M, Híveš J, Laus M, Sparnacci K, Ravera M, Gabano E, Osella D. Electrostatic Interaction of Negatively Charged Core-Shell Nanoparticles with Antitumoral Cationic Platinum-Based Complexes. Eur J Inorg Chem 2011. [DOI: 10.1002/ejic.201100454] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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