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Viola G, Trivellato D, Meulli L, Tira R, Lauriola A, Munari F, Montagnana M, Buffelli M, Assfalg M, D'Onofrio M. Stable ubiquitin conjugation for biological interrogation of ubiquitinated tau repeat domain. Bioorg Chem 2024; 150:107549. [PMID: 38896934 DOI: 10.1016/j.bioorg.2024.107549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Revised: 05/29/2024] [Accepted: 06/07/2024] [Indexed: 06/21/2024]
Abstract
Protein semisynthesis approaches are key for gaining insights into the effects of post-translational modifications (PTMs) on the structure and function of modified proteins. Among PTMs, ubiquitination involves the conjugation of a small protein modifier to a substrate amino acid residue and is unique in controlling a variety of cellular processes. Interest has grown in understanding the role of ubiquitination in neurodegenerative conditions, including tauopathies. The latter are characterized by the accumulation of the intrinsically disordered protein tau in the form of neurofibrillary tangles in the brains of patients. The presence of ubiquitinated tau in the pathological aggregates suggests that ubiquitination might play a role in the formation of abnormal protein deposits. In this study, we developed a new strategy, based on dehydroalanine chemistry, to install wild type ubiquitin on a tau repeat domain construct with site-specificity. We optimized a three-step reaction which yielded a good amount of highly pure tau repeat domain ubiquitinated in position 353. The structural features of the conjugate were examined by circular dichroism and NMR spectroscopy. The ubiquitinated tau was challenged in a number of assays: fibrils formation under aggregating conditions in vitro, chemical stability upon exposure to a variety of biological media including cell extracts, and internalization into astrocytes. The results demonstrated the wide applicability of the new semisynthetic strategy for the investigation of ubiquitinated substrates in vitro or in cell, and in particular for studying if ubiquitination has a role in the molecular mechanisms that underlie the aberrant transition of tau into pathological aggregates.
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Affiliation(s)
- Giovanna Viola
- Department of Biotechnology, University of Verona, 37134 Verona, Italy
| | | | - Lorenzo Meulli
- Department of Neurosciences, Biomedicine and Movement Sciences, University of Verona, 37134 Verona, Italy
| | - Roberto Tira
- Department of Biotechnology, University of Verona, 37134 Verona, Italy
| | - Angela Lauriola
- Department of Biotechnology, University of Verona, 37134 Verona, Italy
| | - Francesca Munari
- Department of Biotechnology, University of Verona, 37134 Verona, Italy
| | - Martina Montagnana
- Department of Engineering for Innovation Medicine, University of Verona, 37134 Verona, Italy
| | - Mario Buffelli
- Department of Neurosciences, Biomedicine and Movement Sciences, University of Verona, 37134 Verona, Italy
| | - Michael Assfalg
- Department of Biotechnology, University of Verona, 37134 Verona, Italy
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An D, Xu Y. Environmental risk factors provoke new thinking for prevention and treatment of dementia with Lewy bodies. Heliyon 2024; 10:e30175. [PMID: 38707435 PMCID: PMC11068646 DOI: 10.1016/j.heliyon.2024.e30175] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 04/09/2024] [Accepted: 04/22/2024] [Indexed: 05/07/2024] Open
Abstract
In recent years, environmental factors have received attention in the pathogenesis of neurodegenerative diseases. Other than genetic factors, the identification of environmental factors and modifiable risk factors may create opportunities to delay the onset or slow the progression of Lewy body disease. Researchers have made significant progress in understanding environmental and modifiable risk factors over the past 30 years. To date, despite the increasing number of articles assessing risk factors for Lewy body disease, few reviews have focused on their role in its onset. In this review, we reviewed the literature investigating the relationship between Lewy body disease and several environmental and other modifiable factors. We found that some air pollutants, exposure to some metals, and infection with some microorganisms may increase the risk of Lewy body disease. Coffee intake and the Mediterranean diet are protective factors. However, it is puzzling that low educational levels and smoking may have some protective effects. In addition, we proposed specific protocols for subsequent research directions on risk factors for neurodegenerative diseases and improved methods. By conducting additional case-control studies, we could explore the role of these factors in the etiopathogenesis of Lewy body disease, establishing a foundation for strategies aimed at preventing and reducing the onset and burden of the disease.
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Affiliation(s)
- Dinghao An
- Department of Neurology, Nanjing Drum Tower Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Nanjing, China
- Department of Neurology, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, China
| | - Yun Xu
- Department of Neurology, Nanjing Drum Tower Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Nanjing, China
- Department of Neurology, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, China
- State Key Laboratory of Pharmaceutical Biotechnology and Institute of Translational Medicine for Brain Critical Diseases, Nanjing University, Nanjing, China
- Jiangsu Key Laboratory for Molecular Medicine, Medical School of Nanjing University, Nanjing, China
- Nanjing Neurology Clinical Medical Center, Nanjing, China
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Wang S, Ding Y, Zhang L, Yang W, Geng T, Li T, Yan T, Chen Y, Ma T, Wu Y, Ye J, Li D. Multiplexed colorimetry collaborated with smartphone-based image analysis for simultaneous and fast visualization of dyes in both environmental and food samples. JOURNAL OF HAZARDOUS MATERIALS 2024; 470:134154. [PMID: 38581871 DOI: 10.1016/j.jhazmat.2024.134154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Revised: 03/19/2024] [Accepted: 03/26/2024] [Indexed: 04/08/2024]
Abstract
In this work, a multiplexed colorimetric strategy was initiated for simultaneous and fast visualization of dyes using low-cost and easy-to-prepare indicator papers as sorbents. Response surface methodology (RSM) was employed to model statistically and optimize the process variables for dyes extraction and colorimetric assays. Multiplexed colorimetry was realized by virtue of synchronous color alignments from different dimensions of multiple dyes co-stained colorimetric cards under RSM-optimized conditions, and smartphone-based image analysis was subsequently performed from different modes to double-check the credibility of colorimetric assays. As concept-to-proof trials, simultaneous visualization of dyes in both beverages and simulated dye effluents was experimentally proved with results highly matched to HPLC or spiked amounts at RSM-predicted staining time as short as 50 s ∼3 min, giving LODs as low as 0.97 ± 0.22/0.18 ± 0.08 μg/mL (tartrazine/brilliant blue) for multiplexed colorimetry, which much lower than those obtained by single colorimetry. Since this is the first case to propose such a RSM-guided multiplexed colorimetric concept, it will provide a reference for engineering of other all-in-one devices which can realize synchronous visualization applications within limited experimental steps.
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Affiliation(s)
- Shuangshou Wang
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China; Anhui Engineering Technology Research Center of Biochemical Pharmaceutical, Bengbu Medical College, Bengbu 233030, China.
| | - Yuwen Ding
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Lu Zhang
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Wenhao Yang
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Tianyou Geng
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Tong Li
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Tingxuan Yan
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Yang Chen
- Anhui Engineering Technology Research Center of Biochemical Pharmaceutical, Bengbu Medical College, Bengbu 233030, China
| | - Tao Ma
- Anhui Engineering Technology Research Center of Biochemical Pharmaceutical, Bengbu Medical College, Bengbu 233030, China
| | - Yu Wu
- Institute of Grain and Oil Quality and Safety, Academy of National Food and Strategic Reserves Administration, Beijing 100037, China
| | - Jin Ye
- Institute of Grain and Oil Quality and Safety, Academy of National Food and Strategic Reserves Administration, Beijing 100037, China.
| | - Daojin Li
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang 471022, China.
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Wang S, Wang H, Yuan Z, Li M, Gao H, Shan L, Li A, Ding Y, Gu J, Zhu L, Yan T, Ye M, Ye J. Colorimetry Combined with Inner Filter Effect-Based Fluorometry: A Versatile and Robust Strategy for Multimode Visualization of Food Dyes. ACS APPLIED MATERIALS & INTERFACES 2022; 14:57251-57264. [PMID: 36516434 DOI: 10.1021/acsami.2c17679] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Herein, a strategy combining colorimetry and inner filter effect (IFE)-based fluorometry was developed for multimode visualization of food dyes (FDs) using CdTe quantum-dots-doped fluorescent indicator papers as a sample-to-answer device. Colorimetry was straightforwardly achieved by FDs extraction through electrostatic interaction and hydrophobic effect while fluorometry was implemented by IFE-induced fluorescence quenching. RGB/gray-scale values of colorimetry and fluorometry were furtherly picked by a smartphone application and applied to reconstruct color information-based digital image analysis for both direct alignments and linear regression analysis. The apparent color and fluorescence of FDs-bound indicator papers, together with their digitized color information, showed a good mapping to FDs concentrations in the range of 0-0.5 mg/mL for Sunset Yellow, 0-0.2 mg/mL for Allura Red, and 0-0.08 mg/mL for Brilliant Blue. As a proof of concept, the dosages of these FDs in real beverages and simulated dye effluents were deduced and cross-validated by different visualization modes, and finally double-checked by instrumental techniques such as spectrometric methods, high-performance liquid chromatography (HPLC), and mass spectroscopy (MS). The above findings concluded that (i) IFE mechanism is generally applicable to build fluorometric systems and (ii) cross validation of different visualization modes can markedly improve detection accuracy, which may provide references for design and fabrication of novel "lab-on-paper" devices for visualization applications with high reliability.
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Affiliation(s)
- Shuangshou Wang
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
- Anhui Engineering Technology Research Center of Biochemical Pharmaceutical, Bengbu Medical University, Bengbu 233030, China
| | - Haili Wang
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Zhihong Yuan
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Mengyao Li
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Hongrui Gao
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Liangjingjing Shan
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Aowei Li
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Yuwen Ding
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Jing Gu
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Lei Zhu
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Tingxuan Yan
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Mingfu Ye
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243032, China
| | - Jin Ye
- Institute of Grain and Oil Quality and Safety, Academy of National Food and Strategic Reserves Administration, Beijing 100037, China
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Gharb M, Nouralishahi A, Riazi A, Riazi G. Inhibition Of Tau Protein Aggregation By a Chaperone-like β-Boswellic Acid Conjugated To Gold Nanoparticles. ACS OMEGA 2022; 7:30347-30358. [PMID: 36061732 PMCID: PMC9434627 DOI: 10.1021/acsomega.2c03616] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Accepted: 07/28/2022] [Indexed: 06/15/2023]
Abstract
A potential therapeutic strategy to inhibit tau protein aggregation in neurons has substantial effects on preventing or controlling Alzheimer's disease (AD). In this work, we designed a covalent and noncovalent conjugation of β-boswellic acid (BA) to gold nanoparticles (GNPs). We provided the opportunity to investigate the effect of the surface composition of BA-GNPs on the aggregation of the tau protein 1N/4R isoform in vitro. HR-TEM and FESEM micrographs revealed that GNPs were spherical and uniform, smaller than 25 nm. According to UV-visible and FTIR data, BA was successfully conjugated to GNPs. The finding illustrates the effect of the surface charge, size, and hydrophobicity of BA-GNPs on the kinetics of tau protein aggregation. The size and surface area of U-G-BA demonstrated that inhibited tau aggregation more effectively than covalently linked BA. The proposed method for preventing tau aggregation was monomer reduction. At the same time, a chaperone-like feature of GNP-BA while sustaining a tau native structure prevented the additional formation of fibrils. Overall, this study provides insight into the interaction of GNP-BAs with a monomer of tau protein and may suggest novel future therapies for AD.
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Affiliation(s)
- Masoumeh Gharb
- Institute
of Biochemistry and Biophysics, University
of Tehran, Tehran 14176-14335, Iran
- Caspian
Factually of Engineering, University of
Tehran, Rezvanshahr 4386191836, Gilan Iran
| | - Amideddin Nouralishahi
- Caspian
Factually of Engineering, University of
Tehran, Rezvanshahr 4386191836, Gilan Iran
| | - Ali Riazi
- Kondor
Pharma Inc., Mississauga, Ontario L4V 1T4, Canada
| | - Gholamhossein Riazi
- Institute
of Biochemistry and Biophysics, University
of Tehran, Tehran 14176-14335, Iran
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Semiquantitative naked-eye detection of synthetic food colorants using highly-branched pipette tip as an all-in-one device. Anal Chim Acta 2022; 1211:339901. [DOI: 10.1016/j.aca.2022.339901] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Revised: 04/14/2022] [Accepted: 04/30/2022] [Indexed: 11/18/2022]
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The impact of caffeine on tau-tau interaction: LSPR detection, structural modification and molecular dynamics simulation. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.115914] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Khodarahmi R. Meet Our Editorial Board Member. CURRENT NUTRITION & FOOD SCIENCE 2021. [DOI: 10.2174/157340131704210322110319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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