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Ruchala J, Sibirny AA. Pentose metabolism and conversion to biofuels and high-value chemicals in yeasts. FEMS Microbiol Rev 2020; 45:6034013. [PMID: 33316044 DOI: 10.1093/femsre/fuaa069] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Accepted: 12/09/2020] [Indexed: 12/15/2022] Open
Abstract
Pentose sugars are widespread in nature and two of them, D-xylose and L-arabinose belong to the most abundant sugars being the second and third by abundance sugars in dry plant biomass (lignocellulose) and in general on planet. Therefore, it is not surprising that metabolism and bioconversion of these pentoses attract much attention. Several different pathways of D-xylose and L-arabinose catabolism in bacteria and yeasts are known. There are even more common and really ubiquitous though not so abundant pentoses, D-ribose and 2-deoxy-D-ribose, the constituents of all living cells. Thus, ribose metabolism is example of endogenous metabolism whereas metabolism of other pentoses, including xylose and L-arabinose, represents examples of the metabolism of foreign exogenous compounds which normally are not constituents of yeast cells. As a rule, pentose degradation by the wild-type strains of microorganisms does not lead to accumulation of high amounts of valuable substances; however, productive strains have been obtained by random selection and metabolic engineering. There are numerous reviews on xylose and (less) L-arabinose metabolism and conversion to high value substances; however, they mostly are devoted to bacteria or the yeast Saccharomyces cerevisiae. This review is devoted to reviewing pentose metabolism and bioconversion mostly in non-conventional yeasts, which naturally metabolize xylose. Pentose metabolism in the recombinant strains of S. cerevisiae is also considered for comparison. The available data on ribose, xylose, L-arabinose transport, metabolism, regulation of these processes, interaction with glucose catabolism and construction of the productive strains of high-value chemicals or pentose (ribose) itself are described. In addition, genome studies of the natural xylose metabolizing yeasts and available tools for their molecular research are reviewed. Metabolism of other pentoses (2-deoxyribose, D-arabinose, lyxose) is briefly reviewed.
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Affiliation(s)
- Justyna Ruchala
- Department of Microbiology and Molecular Genetics, University of Rzeszow, Zelwerowicza 4, Rzeszow 35-601, Poland.,Department of Molecular Genetics and Biotechnology, Institute of Cell Biology NAS of Ukraine, Drahomanov Street, 14/16, Lviv 79005, Ukraine
| | - Andriy A Sibirny
- Department of Microbiology and Molecular Genetics, University of Rzeszow, Zelwerowicza 4, Rzeszow 35-601, Poland.,Department of Molecular Genetics and Biotechnology, Institute of Cell Biology NAS of Ukraine, Drahomanov Street, 14/16, Lviv 79005, Ukraine
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Saccharification Yield through Enzymatic Hydrolysis of the Steam-Exploded Pinewood. ENERGIES 2020. [DOI: 10.3390/en13174552] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
Pressure, temperature, and retention time are the most studied parameters in steam explosion pretreatment. However, this work aimed to fix these parameters and to evaluate the influences of several less investigated steam explosion parameters on the saccharification yield in hydrolysis. In this study, firstly, pinewood samples smaller than 200 µm were treated with steam explosion at 190 °C for 10 min. The variable parameters were biomass loading, N2 pressure, and release time. Steam-exploded samples were hydrolyzed with the Trichoderma reesei enzyme for saccharification for 72 h. The sugar content of the resultant products was analyzed to estimate the yield of sugars (such as glucose, xylose, galactose, mannose, and arabinose). The best glucose yield in the pulp was achieved with 4 g of sample, N2 pressure of 0.44 MPa, and short release time (22 s). These conditions gave a glucose yield of 97.72% in the pulp, and the xylose, mannose, galactose, and arabinose yields in the liquid fraction were found to be 85.59%, 87.76%, 86.43%, and 90.3%, respectively.
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Ruchala J, Kurylenko OO, Dmytruk KV, Sibirny AA. Construction of advanced producers of first- and second-generation ethanol in Saccharomyces cerevisiae and selected species of non-conventional yeasts (Scheffersomyces stipitis, Ogataea polymorpha). J Ind Microbiol Biotechnol 2019; 47:109-132. [PMID: 31637550 PMCID: PMC6970964 DOI: 10.1007/s10295-019-02242-x] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Accepted: 10/01/2019] [Indexed: 12/20/2022]
Abstract
This review summarizes progress in the construction of efficient yeast ethanol producers from glucose/sucrose and lignocellulose. Saccharomyces cerevisiae is the major industrial producer of first-generation ethanol. The different approaches to increase ethanol yield and productivity from glucose in S. cerevisiae are described. Construction of the producers of second-generation ethanol is described for S. cerevisiae, one of the best natural xylose fermenters, Scheffersomyces stipitis and the most thermotolerant yeast known Ogataea polymorpha. Each of these organisms has some advantages and drawbacks. S. cerevisiae is the primary industrial ethanol producer and is the most ethanol tolerant natural yeast known and, however, cannot metabolize xylose. S. stipitis can effectively ferment both glucose and xylose and, however, has low ethanol tolerance and requires oxygen for growth. O. polymorpha grows and ferments at high temperatures and, however, produces very low amounts of ethanol from xylose. Review describes how the mentioned drawbacks could be overcome.
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Affiliation(s)
- Justyna Ruchala
- Department of Microbiology and Biotechnology, University of Rzeszow, Zelwerowicza 4, 35-601, Rzeszow, Poland
| | - Olena O Kurylenko
- Department of Molecular Genetics and Biotechnology, Institute of Cell Biology, NAS of Ukraine, Drahomanov Street, 14/16, Lviv, 79005, Ukraine
| | - Kostyantyn V Dmytruk
- Department of Molecular Genetics and Biotechnology, Institute of Cell Biology, NAS of Ukraine, Drahomanov Street, 14/16, Lviv, 79005, Ukraine
| | - Andriy A Sibirny
- Department of Microbiology and Biotechnology, University of Rzeszow, Zelwerowicza 4, 35-601, Rzeszow, Poland.
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Zhao W, Zhao F, Zhang S, Gong Q, Chen G. Ethanol production by simultaneous saccharification and cofermentation of pretreated corn stalk. J Basic Microbiol 2019; 59:744-753. [DOI: 10.1002/jobm.201900117] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Revised: 03/28/2019] [Accepted: 05/05/2019] [Indexed: 12/12/2022]
Affiliation(s)
- Wenxuan Zhao
- Jilin Agricultural University; Innovation Platform of Straw Comprehensive Utilization of Jilin Province; Changchun China
| | - Fuguang Zhao
- Jilin Agricultural University; Innovation Platform of Straw Comprehensive Utilization of Jilin Province; Changchun China
| | - Sitong Zhang
- Jilin Agricultural University; Innovation Platform of Straw Comprehensive Utilization of Jilin Province; Changchun China
| | - Qinglong Gong
- Jilin Agricultural University; Innovation Platform of Straw Comprehensive Utilization of Jilin Province; Changchun China
| | - Guang Chen
- Jilin Agricultural University; Innovation Platform of Straw Comprehensive Utilization of Jilin Province; Changchun China
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Cunha-Pereira FD, Hickert LR, Rech R, Dillon AP, Ayub MAZ. Fermentation of hexoses and pentoses from hydrolyzed soybean hull into ethanol and xylitol by Candida guilliermondii BL 13. BRAZILIAN JOURNAL OF CHEMICAL ENGINEERING 2017. [DOI: 10.1590/0104-6632.20170344s20160005] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
| | | | - R. Rech
- Federal University of Rio Grande do Sul, Brazil
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Ma K, He M, You H, Pan L, Hu G, Cui Y, Maeda T. Enhanced fuel ethanol production from rice straw hydrolysate by an inhibitor-tolerant mutant strain of Scheffersomyces stipitis. RSC Adv 2017. [DOI: 10.1039/c7ra04049k] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A novel process for bioethanol production from lignocellulosic biomass using an inhibitor-tolerant mutant strain of Scheffersomyces stipitis and cell-recycling continuous fermentation.
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Affiliation(s)
- Kedong Ma
- College of Environmental and Chemical Engineering
- Dalian University
- Dalian 116622
- PR China
- Key Laboratory of Development and Application of Rural Renewable Energy
| | - Mingxiong He
- Key Laboratory of Development and Application of Rural Renewable Energy
- Ministry of Agriculture
- Biomass Energy Technology Research Centre
- Biogas Institute of Ministry of Agriculture
- Chengdu 610041
| | - Huiyan You
- College of Environmental and Chemical Engineering
- Dalian University
- Dalian 116622
- PR China
| | - Liwei Pan
- College of Environmental and Chemical Engineering
- Dalian University
- Dalian 116622
- PR China
| | - Guoquan Hu
- Key Laboratory of Development and Application of Rural Renewable Energy
- Ministry of Agriculture
- Biomass Energy Technology Research Centre
- Biogas Institute of Ministry of Agriculture
- Chengdu 610041
| | - Yubo Cui
- Department of Environmental Science and Technology
- Dalian Nationalities University
- Dalian 116600
- PR China
| | - Toshinari Maeda
- Department of Biological Functions Engineering
- Graduate School of Life Science and Systems Engineering
- Kyushu Institute of Technology
- Kitakyushu 808-0196
- Japan
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Genetic improvement of native xylose-fermenting yeasts for ethanol production. J Ind Microbiol Biotechnol 2014; 42:1-20. [DOI: 10.1007/s10295-014-1535-z] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2014] [Accepted: 11/02/2014] [Indexed: 12/27/2022]
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Moreno AD, Ibarra D, Alvira P, Tomás-Pejó E, Ballesteros M. A review of biological delignification and detoxification methods for lignocellulosic bioethanol production. Crit Rev Biotechnol 2014; 35:342-54. [DOI: 10.3109/07388551.2013.878896] [Citation(s) in RCA: 121] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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Nguyen CM, Nguyen TN, Choi GJ, Choi YH, Jang KS, Park YJ, Kim JC. Acid hydrolysis of Curcuma longa residue for ethanol and lactic acid fermentation. BIORESOURCE TECHNOLOGY 2014; 151:227-235. [PMID: 24240182 DOI: 10.1016/j.biortech.2013.10.039] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2013] [Revised: 10/08/2013] [Accepted: 10/11/2013] [Indexed: 06/02/2023]
Abstract
This research examines the acid hydrolysis of Curcuma longa waste, to obtain the hydrolysate containing lactic acid and ethanol fermentative sugars. A central composite design for describing regression equations of variables was used. The selected optimum condition was 4.91% sulphuric acid, 122.68°C and 50 min using the desirability function under the following conditions: the maximum reducing sugar (RS) yield is within the limited range of the 5-hydroxymethylfurfural (HMF) and furfural concentrations. Under the condition, the obtained solution contained 144 g RS/L, 0.79 g furfural/L and 2.59 g HMF/L and was directly fermented without a detoxification step. The maximum product concentration, average productivity, RS conversion and product yield were 115.36 g/L, 2.88 g/L/h, 89.43% and 64% for L-lactic acid; 113.92 g/L, 2.59 g/L/h, 88.31% and 63.29% for D-lactic acid; and 55.03 g/L, 1.38 g/L/h, 42.66 and 30.57%, respectively, for ethanol using a 7-L jar fermenter.
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Affiliation(s)
- Cuong Mai Nguyen
- Department of Green Chemistry and Environmental Biotechnology, University of Science and Technology, 217, Gajungro, Yuseong-gu, Daejeon 305-333, Republic of Korea; Research Center for Biobased Chemistry, Division of Convergence Chemistry, Korea Research Institute of Chemical Technology, Daejeon 305-600, Republic of Korea
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Enzymatic Hydrolysis and Succinic Acid Fermentation from Steam-Exploded Corn Stalk at High Solid Concentration by Recombinant Escherichia coli. Appl Biochem Biotechnol 2013; 170:1942-9. [DOI: 10.1007/s12010-013-0319-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2012] [Accepted: 05/31/2013] [Indexed: 10/26/2022]
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