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Zhao L, Pan J, Cai S, Chen L, Cai T, Ji XM. Biosynthesis of poly(3-hydroxybutyrate) by N,N-dimethylformamide degrading strain Paracoccus sp. PXZ: A strategy for resource utilization of pollutants. BIORESOURCE TECHNOLOGY 2023; 384:129318. [PMID: 37315624 DOI: 10.1016/j.biortech.2023.129318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 06/09/2023] [Accepted: 06/10/2023] [Indexed: 06/16/2023]
Abstract
N,N-dimethylformamide is a toxic chemical solvent, which widely exists in industrial wastewater. Nevertheless, the relevant methods merely achieved non-hazardous treatment of N,N-dimethylformamide. In this study, one efficient N,N-dimethylformamide degrading strain was isolated and developed for pollutant removal coupling with poly(3-hydroxybutyrate) (PHB) accumulation. The functional host was characterized as Paracoccus sp. PXZ, which could consume N,N-dimethylformamide as the nutrient substrate for cell reproduction. Whole-genome sequencing analysis confirmed that PXZ simultaneously possesses the essential genes for poly(3-hydroxybutyrate) synthesis. Subsequently, the approaches of nutrient supplementation and various physicochemical variables to strengthen poly(3-hydroxybutyrate) production were investigated. The optimal biopolymer concentration was 2.74 g·L-1 with a poly(3-hydroxybutyrate) proportion of 61%, showing a yield of 0.29 g-PHB·g-1-fructose. Furthermore, N,N-dimethylformamide served as the special nitrogen matter that could realize a similar poly(3-hydroxybutyrate) accumulation. This study provided a fermentation technology coupling with N,N-dimethylformamide degradation, offering a new strategy for resource utilization of specific pollutants and wastewater treatment.
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Affiliation(s)
- Leizhen Zhao
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Jiachen Pan
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Shu Cai
- Department of Biological and Agricultural Engineering, University of California, Davis, CA 95616, United States
| | - Liwei Chen
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Tianming Cai
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Xiao-Ming Ji
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China.
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2
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Ren J, Qi X, Zhang J, Niu D, Shen Y, Yu C, Zhi J, Wang C, Jiang X, Zhang W, Li C. Biodegradation efficiency and mechanism of erythromycin degradation by Paracoccus versutus W7. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 332:117372. [PMID: 36731410 DOI: 10.1016/j.jenvman.2023.117372] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2022] [Revised: 01/14/2023] [Accepted: 01/23/2023] [Indexed: 06/18/2023]
Abstract
Continuous and excessive usage of erythromycin results in serious environmental pollution and presents a health risk to humans. Biological treatment is considered as an efficient and economical method to remove it from the environment. In this study, a novel erythromycin-degrading bacterial strain, W7, isolated from sewage sludge was identified as Paracoccus versutus. Strain W7 degraded 58.5% of 50 mg/L erythromycin in 72 h under the optimal conditions of 35 °C, pH 7.0, and 0.1% sodium citrate with yeast powder in mineral salt medium. It completely eliminated erythromycin from erythromycin fermentation residue at concentrations of 100 and 300 mg/L within 36 and 60 h, respectively. Erythromycin esterase (EreA) was found to be involved in erythromycin metabolism in this strain and was expressed successfully. EreA could hydrolyze erythromycin, and its maximum activity occurred at pH 8.5 and 35 °C. Finally, six intermediates of erythromycin degraded by strain W7 were detected by high performance liquid chromatography mass spectrometry. Based on the novel intermediates and enzymes, we determined two possible pathways of erythromycin degradation by strain W7. This study broadened our understanding of the erythromycin catabolic processes of P. versutus and developed a feasible microbial strategy for removing erythromycin from erythromycin fermentation residue, wastewater, and other erythromycin-contaminated environments.
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Affiliation(s)
- Jianjun Ren
- Institute of Urban and Rural Mining, Changzhou University, No.21 Gehu Road, Wujin District, Changzhou 213164, China; National-Local Joint Engineering Research Center for Biomass Refining and High-Quality Utilization, Changzhou University, No.21 Gehu Road, Wujin District, Changzhou 213164, China
| | - Xiancheng Qi
- Institute of Urban and Rural Mining, Changzhou University, No.21 Gehu Road, Wujin District, Changzhou 213164, China; School of Pharmacy & School of Biological and Food Engineering, Changzhou University, No.21 Gehu Road, Wujin District, Changzhou 213164, China
| | - Jian Zhang
- Institute of Urban and Rural Mining, Changzhou University, No.21 Gehu Road, Wujin District, Changzhou 213164, China; National-Local Joint Engineering Research Center for Biomass Refining and High-Quality Utilization, Changzhou University, No.21 Gehu Road, Wujin District, Changzhou 213164, China
| | - Dongze Niu
- Institute of Urban and Rural Mining, Changzhou University, No.21 Gehu Road, Wujin District, Changzhou 213164, China; National-Local Joint Engineering Research Center for Biomass Refining and High-Quality Utilization, Changzhou University, No.21 Gehu Road, Wujin District, Changzhou 213164, China
| | - Yunpeng Shen
- Yili Chuanning Biotechnology Co., Ltd. No. 156 Alamutuya Country, Yining District, Yili 835000, China
| | - Changyong Yu
- Institute of Urban and Rural Mining, Changzhou University, No.21 Gehu Road, Wujin District, Changzhou 213164, China; National-Local Joint Engineering Research Center for Biomass Refining and High-Quality Utilization, Changzhou University, No.21 Gehu Road, Wujin District, Changzhou 213164, China
| | - Junqiang Zhi
- Beijing General Station of Animal Husbandry, No. 21 Chaoqian Road, Changping District, Beijing, 100101, China
| | - Chongqing Wang
- Beijing General Station of Animal Husbandry, No. 21 Chaoqian Road, Changping District, Beijing, 100101, China
| | - Xingmei Jiang
- Bijie Institute of Animal Husbandry and Veterinary Sciences, Degoumajiayuan Road, Qixingguan District, Bijie 551700, China
| | - Wenfan Zhang
- Institute of Urban and Rural Mining, Changzhou University, No.21 Gehu Road, Wujin District, Changzhou 213164, China; National-Local Joint Engineering Research Center for Biomass Refining and High-Quality Utilization, Changzhou University, No.21 Gehu Road, Wujin District, Changzhou 213164, China
| | - Chunyu Li
- Institute of Urban and Rural Mining, Changzhou University, No.21 Gehu Road, Wujin District, Changzhou 213164, China; National-Local Joint Engineering Research Center for Biomass Refining and High-Quality Utilization, Changzhou University, No.21 Gehu Road, Wujin District, Changzhou 213164, China.
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3
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Zhao L, Pan J, Ding Y, Cai S, Cai T, Chen L, Ji XM. Coupling continuous poly(3-hydroxybutyrate) synthesis with piperazine-contained wastewater treatment: Fermentation performance and microbial contamination deciphering. Int J Biol Macromol 2023; 226:1523-1532. [PMID: 36455823 DOI: 10.1016/j.ijbiomac.2022.11.264] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 11/21/2022] [Accepted: 11/24/2022] [Indexed: 11/30/2022]
Abstract
Open poly(3-hydroxybutyrate) (PHB) fermentation is of great potential, and batch PHB synthesis with piperazine as the nitrogen switch has been realized. However, it is vital to explore the feasibility of continuous PHB fermentation with piperazine-contained wastewater remediation collaboratively. Here, an aerobic membrane bioreactor was constructed for consecutive PHB synthesis. The removal efficiency of piperazine decreased from 100 % to 82.6 % after three cycles, meanwhile, the PHB concentration was 0.39 g·L-1, 0.18 g·L-1, and undetected for each cycle. Microbial community analysis showed that Proteobacteria, Actinobacteriota, and Bacteroidota were the main contaminating microbes. Furthermore, three metagenome-assembled genomes related to Flavobacterium collumnare, Herbaspirillum aquaticum, and Microbacterium enclense were identified as the dominant contaminating strains. These microbes obtained nitrogenous substrates transformed by Paracoccus sp. TOH, such as amino acids and dissolved organic matter, as nutrient for accumulation. This study verified the practicability of coupling continuous PHB synthesis with industrial wastewater treatment and revealed the derivation mechanism of contaminating species, which could provide a reference for the targeted nitrogen release gene knockout of functional PHB fermentation chassis.
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Affiliation(s)
- Leizhen Zhao
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Jiachen Pan
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Yi Ding
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Shu Cai
- Department of Biological and Agricultural Engineering, University of California, Davis, CA 95616, United States
| | - Tianming Cai
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Liwei Chen
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
| | - Xiao-Ming Ji
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
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4
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Wang G, Li X, Zheng J, Li X, Bai L, Yue W, Li J. Isolation of a diazinon-degrading strain Sphingobium sp. DI-6 and its novel biodegradation pathway. Front Microbiol 2022; 13:929147. [PMID: 36081782 PMCID: PMC9445152 DOI: 10.3389/fmicb.2022.929147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Accepted: 07/26/2022] [Indexed: 11/13/2022] Open
Abstract
Diazinon is one of the most widely used organophosphate insecticides, one that is frequently detected in the environment. In this study, a diazinon-degrading bacterium, DI-6, previously isolated from diazinon-contaminated soil in China has been subsequently identified as Sphingobium sp. on the basis of its physiological and biochemical characteristics, as well as by virtue of a comparative analysis of 16S rRNA gene sequences. This strain is capable of using diazinon as its sole carbon source for growth and was able to degrade 91.8% of 100 mg L–1 diazinon over a 60-h interval. During the degradation of diazinon, the following seven metabolites were captured and identified by gas chromatography/mass spectrometry (GC–MS) analysis: diazoxon, diazinon aldehyde, isopropenyl derivative of diazinon, hydroxyethyl derivative of diazinon, diazinon methyl ketone, O-[2-(1-hydroxyethyl)-6-methylpyrimidin-4-yl] O-methyl O-hydrogen phosphorothioate, and O-(6-methyl pyrimidin-4-yl) O,O-dihydrogen phosphorothioate. Based on these metabolites, a novel microbial biodegradation pathway of diazinon by Sphingobium sp. DI-6 is proposed. This research provides potentially useful information for the application of the DI-6 strain in bioremediation of diazinon-contaminated environments.
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Affiliation(s)
- Guangli Wang
- Anhui Province Key Laboratory of Pollutant Sensitive Materials and Environmental Remediation, School of Life Sciences, Huaibei Normal University, Huaibei, China
| | - Xiang Li
- Anhui Province Key Laboratory of Pollutant Sensitive Materials and Environmental Remediation, School of Life Sciences, Huaibei Normal University, Huaibei, China
| | - Jiaxin Zheng
- Anhui Province Key Laboratory of Pollutant Sensitive Materials and Environmental Remediation, School of Life Sciences, Huaibei Normal University, Huaibei, China
| | - Xuedong Li
- Anhui Province Key Laboratory of Pollutant Sensitive Materials and Environmental Remediation, School of Life Sciences, Huaibei Normal University, Huaibei, China
| | - Lingling Bai
- Anhui Province Key Laboratory of Pollutant Sensitive Materials and Environmental Remediation, School of Life Sciences, Huaibei Normal University, Huaibei, China
| | - Wenlong Yue
- Laboratory of Applied Microbiology and Biotechnology, School of Pharmaceutical Engineering & Life Science, Changzhou University, Changzhou, China
- *Correspondence: Wenlong Yue,
| | - Jiang Li
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Ürümqi, China
- Jiang Li,
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5
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Zhao L, Cai S, Zhang J, Zhang Q, Chen L, Ji X, Zhang R, Cai T. Poly(3-hydroxybutyrate) biosynthesis under non-sterile conditions: Piperazine as nitrogen substrate control switch. Int J Biol Macromol 2022; 209:1457-1464. [PMID: 35461873 DOI: 10.1016/j.ijbiomac.2022.04.122] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Revised: 04/14/2022] [Accepted: 04/17/2022] [Indexed: 11/16/2022]
Abstract
Poly(3-hydroxybutyrate) (PHB), as a kind of bioplastics for sustainable development, can be synthesized by various microorganisms, however, the high cost of its microbial fermentation is a challenge for its large-scale application. In this study, piperazine degrading strain, Paracoccus sp. TOH, was developed as an excellent chassis for open PHB fermentation with piperazine as controlling element. Whole-genome analysis showed that TOH possesses multi-substrate metabolic pathways to synthesize PHB. Next, TOH could achieve a maximum PHB concentration of 2.42 g L-1, representing a yield of 0.36 g-PHB g-1-glycerol when C/N ratio was set as 60:1 with 10 g L-1 glycerol as substrate. Furthermore, TOH could even synthesize 0.39 g-PHB g-1-glycerol under non-sterile conditions when piperazine was fed with a suitable rate of 1 mg L-1 h-1. 16S rRNA gene sequencing analysis showed that microbial contamination could be effectively inhibited through the regulation of piperazine under non-sterile conditions and TOH dominated the microbial community with a relative abundance of 72.3% at the end of the operational period. This study offers an inspired open PHB fermentation system with piperazine as the control switch, which will realize the goal of efficient industrial biotechnology as well as industrial wastewater treatment.
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Affiliation(s)
- Leizhen Zhao
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Shu Cai
- Department of Biological and Agricultural Engineering, University of California, Davis, CA 95616, United States
| | - Jiaqi Zhang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Qi Zhang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Liwei Chen
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Xiaoming Ji
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Ruihong Zhang
- Department of Biological and Agricultural Engineering, University of California, Davis, CA 95616, United States
| | - Tianming Cai
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China.
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6
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Puri A, Bajaj A, Singh Y, Lal R. Harnessing taxonomically diverse and metabolically versatile genus Paracoccus for bioplastic synthesis and xenobiotic biodegradation. J Appl Microbiol 2022; 132:4208-4224. [PMID: 35294092 DOI: 10.1111/jam.15530] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2021] [Revised: 03/11/2022] [Accepted: 03/12/2022] [Indexed: 11/26/2022]
Abstract
The genus Paracoccus represents a taxonomically diverse group comprising more than 80 novel species isolated from various pristine and polluted environments. The species are characterized as coccoid shaped Gram-negative bacteria with versatile metabolic attributes and classified as autotrophs, heterotrophs and/or methylotrophs. Present study highlights the up-to-date global taxonomic diversity and critically discusses the significance of genome analysis for identifying the genomic determinants related to functional attributes mainly bioplastic synthesis and biodegradation potential that makes these isolates commercially viable. The analysis accentuates polyphasic and genomic attributes of Paracoccus spp. which could be harnessed for commercial applications and emphasizes the need of integrating genome based computational analysis for evolutionary species and functional diversification. The work reflects on the underexplored genetic potential for bioplastic synthesis which can be harnessed using advanced genomic methods. It also underlines the degradation potential and possible use of naturally-occurring pollutant-degrading Paracoccus isolates for development of biodegradation system and efficient removal of contaminants. The work contemplates plausible use of such potent isolates to establish the plant-microbe interaction, contributing towards contaminated land reclamation. Overall; the work signifies need and application of genome analysis to identify and explore prospective potential of Paracoccus spp. for environmental application towards achieving sustainability.
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Affiliation(s)
- Akshita Puri
- Department of Zoology, University of Delhi, Delhi, India.,Present addresses: P.G.T.D, Zoology, R.T.M Nagpur University, Nagpur, 440033, India
| | - Abhay Bajaj
- Department of Zoology, University of Delhi, Delhi, India.,Present addresses: CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440020, India
| | - Yogendra Singh
- Department of Zoology, University of Delhi, Delhi, India
| | - Rup Lal
- Department of Zoology, University of Delhi, Delhi, India.,Present addresses: NASI Senior Scientist Platinum Jubilee Fellow, The Energy and Resources Institute Darbari Seth Block, IHC Complex, Lodhi Road New Delhi-110003, India
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7
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Aravind M, Kappen J, Varalakshmi P, John SA, Ashokkumar B. Bioengineered Graphene Oxide Microcomposites Containing Metabolically Versatile Paracoccus sp. MKU1 for Enhanced Catechol Degradation. ACS OMEGA 2020; 5:16752-16761. [PMID: 32685843 PMCID: PMC7364705 DOI: 10.1021/acsomega.0c01693] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/13/2020] [Accepted: 06/10/2020] [Indexed: 06/11/2023]
Abstract
Paracoccus sp. MKU1, a metabolically versatile bacterium that encompasses diverse metabolic pathways in its genome for the degradation of aromatic compounds, was investigated for catechol bioremediation here for the first time to our knowledge. Paracoccus sp. MKU1 degraded catechol at an optimal pH of 7.5 and a temperature of 37 °C, wherein 100 mg/L catechol was completely mineralized in 96 h but required 192 h for complete mineralization of 500 mg/L catechol. While investigating the molecular mechanisms of its degradation potential, it was unveiled that Paracoccus sp. MKU1 employed both the ortho and meta pathways by inducing the expression of catechol 1,2-dioxygenase (C12O) and catechol 2,3-dioxygenase (C23O), respectively. C23O expression at transcriptional levels was significantly more abundant than C12O, which indicated that catechol degradation was primarily mediated by extradiol cleavage by MKU1. Furthermore, poly(MAA-co-BMA)-GO (PGO) microcomposites containing Paracoccus sp. MKU1 were synthesized, which degraded catechol (100 mg/L) completely within 48 h with excellent recycling performance for three cycles. Thus, PGO@Paracoccus microcomposites proved to be efficient in catechol degradation at not only faster rates but also with excellent recycling performances than free cells. These findings accomplish that Paracoccus sp. MKU1 could serve as a potential tool for bioremediation of catechol-polluted industrial wastewater and soil.
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Affiliation(s)
- Manikka
Kubendran Aravind
- Department
of Genetic Engineering, School of Biotechnology, Madurai Kamaraj University, Madurai 625021, Tamil Nadu, India
| | - Jincymol Kappen
- Centre
for Nanoscience and Nanotechnology, Department of Chemistry, Gandhigram Rural Institute, Gandhigram 624302, Tamil Nadu, India
| | - Perumal Varalakshmi
- Department
of Molecular Microbiology, School of Biotechnology, Madurai Kamaraj University, Madurai 625021, Tamil Nadu, India
| | - Swamidoss Abraham John
- Centre
for Nanoscience and Nanotechnology, Department of Chemistry, Gandhigram Rural Institute, Gandhigram 624302, Tamil Nadu, India
| | - Balasubramaniem Ashokkumar
- Department
of Genetic Engineering, School of Biotechnology, Madurai Kamaraj University, Madurai 625021, Tamil Nadu, India
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8
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Poursat BAJ, van Spanning RJM, Braster M, Helmus R, de Voogt P, Parsons JR. Long-term exposure of activated sludge in chemostats leads to changes in microbial communities composition and enhanced biodegradation of 4-chloroaniline and N-methylpiperazine. CHEMOSPHERE 2020; 242:125102. [PMID: 31669985 DOI: 10.1016/j.chemosphere.2019.125102] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Revised: 10/04/2019] [Accepted: 10/10/2019] [Indexed: 06/10/2023]
Abstract
Exposure history and adaptation of the inoculum to chemicals have been shown to influence the outcome of ready biodegradability tests. However, there is a lack of information about the mechanisms involved in microbial adaptation and the implication thereof for the tests. In the present study, we investigated the impact of a long-term exposure to N-methylpiperazine (NMP) and 4-chloroaniline (4CA) of an activated sludge microbial community using chemostat systems. The objective was to characterize the influence of adaptation to the chemicals on an enhanced biodegradation testing, following the OECD 310 guideline. Cultures were used to inoculate the enhanced biodegradability tests, in batch, before and after exposure to each chemical independently in chemostat culture. Composition and diversity of the microbial communities were characterised by 16s rRNA gene amplicon sequencing. Using freshly sampled activated sludge, NMP was not degraded within the 28 d frame of the test while 4CA was completely eliminated. However, after one month of exposure, the community exposed to NMP was adapted and could completely degrade it. This result was in complete contrast with that from the culture exposed for 3 months to 4CA. Long term incubation in the chemostat system led to a progressive loss of the initial biodegradation capacity of the community, as a consequence of the loss of key degrading microorganisms. This study highlights the potential of chemostat systems to induce adaptation to a specific chemical, ultimately resulting in its biodegradation. At the same time, one should be critical of these observations as the dynamics of a microbial community are difficult to maintain in chemostat, as the loss of 4CA biodegradation capacity demonstrates.
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Affiliation(s)
- Baptiste A J Poursat
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands; Department of Molecular Cell Biology, Vrije Universteit, de Boelelaan 1108, 1081 HZ, Amsterdam, the Netherlands.
| | - Rob J M van Spanning
- Department of Molecular Cell Biology, Vrije Universteit, de Boelelaan 1108, 1081 HZ, Amsterdam, the Netherlands
| | - Martin Braster
- Department of Molecular Cell Biology, Vrije Universteit, de Boelelaan 1108, 1081 HZ, Amsterdam, the Netherlands
| | - Rick Helmus
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands
| | - Pim de Voogt
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands; KWR Watercycle Research Institute, Nieuwegein, the Netherlands
| | - John R Parsons
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands
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9
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Li H, Zhang S, Yang XL, Xu H, Yang YL, Wang YW, Song HL. Simulated wastewater reduced Klebsiella michiganensis strain LH-2 viability and corresponding antibiotic resistance gene abundance in bio-electrochemical reactors. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2018; 162:376-382. [PMID: 30015182 DOI: 10.1016/j.ecoenv.2018.07.018] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2018] [Revised: 06/25/2018] [Accepted: 07/05/2018] [Indexed: 06/08/2023]
Abstract
A previous study revealed that the electrolytic stimulation process in bio-electrochemical reactors (BER) can accelerate growth of sulfadiazine (SDZ) antibiotic resistant bacteria (ARB) in nutrient broth medium. However, the influence of different medium nutrient richness on the fate of ARB and the relative abundance of their corresponding antibiotic resistance genes (ARGs) in this process is unknown. Specifically, it is not clear if the fate of ARB in minimal nutrition simulated wastewater is the same as in nutrient broth under electrolytic stimulation. Therefore, in this study, nutrient broth medium and the simulated wastewater were compared to identify differences in the relative abundance of Klebsiella michiganensis LH-2 ARGs in response to the electrolytic stimulation process, as well as the fate of the strain in simulated wastewater. Lower biomass, specific growth rates and viable bacterial counts were obtained in response to the application of increasing current to simulated wastewater medium. Furthermore, the percentage of ARB lethality, which was reflected by flow cytometry analysis, increased with current in the medium. A significant positive correlation of sul genes and intI gene relative abundance versus current was also observed in nutrient broth. However, a significant negative correlation was observed in simulated wastewater because of the higher metabolic burden, which may have led to decreased ARB viability. Further investigation showed that the decrease in ARGs abundance was responsible for decreased strain tolerance to SDZ in simulated wastewater. These results reveal that minimal nutrition simulated wastewater may reduce ARB and ARGs propagation in BER.
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Affiliation(s)
- Hua Li
- School of Energy and Environment, Southeast University, Nanjing 210096, China.
| | - Shuai Zhang
- School of Energy and Environment, Southeast University, Nanjing 210096, China.
| | - Xiao-Li Yang
- School of Civil Engineering, Southeast University, Nanjing 210096, China.
| | - Han Xu
- School of Energy and Environment, Southeast University, Nanjing 210096, China.
| | - Yu-Li Yang
- School of Civil Engineering, Southeast University, Nanjing 210096, China; School of Environment, Nanjing Normal University, Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, Jiangsu Engineering Lab of Water and Soil Eco-remediation, Wenyuan Road 1, Nanjing 210023, China; Department of Civil and Environmental Engineering, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.
| | - Ya-Wen Wang
- School of Environment, Nanjing Normal University, Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, Jiangsu Engineering Lab of Water and Soil Eco-remediation, Wenyuan Road 1, Nanjing 210023, China.
| | - Hai-Liang Song
- School of Environment, Nanjing Normal University, Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, Jiangsu Engineering Lab of Water and Soil Eco-remediation, Wenyuan Road 1, Nanjing 210023, China.
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10
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Li H, Yang XL, Song HL, Zhang S, Long XZ. Effects ofdirect current on Klebsiella spp. viability and corresponding resistance gene expression in simulative bio-electrochemical reactors. CHEMOSPHERE 2018; 196:251-259. [PMID: 29306197 DOI: 10.1016/j.chemosphere.2017.12.176] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2017] [Revised: 12/02/2017] [Accepted: 12/27/2017] [Indexed: 06/07/2023]
Abstract
The fate of antibiotic-resistant bacteria (ARB) and associated antibiotic-resistant gene (ARG) expression under electrolytic stimulation in bio-electrochemical reactors (BERs) was unknown. In this study, sulfadiazine resistant bacteria (Klebsiella spp.), which were isolated from a BER, were subjected to constant direct current (DC) stimulation in a simulated BER. With an increase of the current from 7 to 28 mA, it was found that lactic dehydrogenase (LDH) showed a 1.03-, 1.21-, 1.34-, and 1.46-fold value compared with the control at 48 h, indicating that the cell membrane permeability had increased. Since the adenosine triphosphate (ATP) concentration increased with the current, the specific growth rate of Klebsiella spp. increased (R = 0.98). The viable count of Klebsiella spp. reached a maximum at 19 mA and then decreased. The percentage of ARB lethality, which was reflected by flow cytometry analysis, increased from 18% (7 mA) to 37.8% (28 mA) at 48 h. Reactive oxygen species (ROS) produced from the electrolysis of water were greater with the increasing current (R = 0.94), which may be responsible for the high lethality rate of Klebsiella spp.. Scanning electronic microscope results showed that electrolytic stimulation changed the cell surface morphology with some cell disruption. An upregulation of sulII and int1 expression was observed. A significant correlation between int1 and the current (R = 0.97) were observed. Taken together, BERs possess potential risks in accelerating ARB multiplication and promoting ARG expression.
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Affiliation(s)
- Hua Li
- School of Energy and Environment, Southeast University, Nanjing 210096, China.
| | - Xiao-Li Yang
- School of Civil Engineering, Southeast University, Nanjing 210096, China.
| | - Hai-Liang Song
- School of Environment, Nanjing Normal University, Jiangsu Engineering Lab of Water and Soil Eco-remediation, Wenyuan Road 1, Nanjing 210023, China.
| | - Shuai Zhang
- School of Energy and Environment, Southeast University, Nanjing 210096, China.
| | - Xi-Zi Long
- School of Energy and Environment, Southeast University, Nanjing 210096, China.
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11
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Biodegradation of 2-hydroxyl-1,4 naphthoquinone (lawsone) by Pseudomonas taiwanensis LH-3 isolated from activated sludge. Sci Rep 2017; 7:6795. [PMID: 28754900 PMCID: PMC5533781 DOI: 10.1038/s41598-017-06338-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2016] [Accepted: 06/13/2017] [Indexed: 11/09/2022] Open
Abstract
2-hydroxy-1,4 naphthoquinone (lawsone) is widely used and induces environmental pollutions during its production and application. In the present study, a lawsone-degrading bacterium strain, LH-3 was successfully isolated from the activated sludge. Based on the 16S rRNA gene analysis, the strain LH-3 phylogenetically belonged to the Pseudomonas taiwanensis. It could degrade 200 mg L−1 lawsone completely in 9 h with an inoculum quantity of 1% (v/v). The effects of environmental conditions on the degradation process and the degradation pathway were systematically investigated. LH-3 could maintain its high degradation efficiency under high salt condition. The identified intermediates of salicylic acid, 2-hydroxy-4-oxo-chroman-2-carboxylic acid, and catechol elucidated the potential degradation pathway. Furthermore, the immobilized LH-3 strain cells prepared with alginate gel and biochar performed excellent stability in nine successive degradation runs. It could sucessfully survive in laboratory scale sequencing batch reactor and become to be the dominant species. This study clearly revealed that LH-3 could serve as an attractive candidate for the microbial remediation of lawsone-containing wastewater.
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12
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Wang G, Liu Y. Diazinon degradation by a novel strain Ralstonia sp. DI-3 and X-ray crystal structure determination of the metabolite of diazinon. J Biosci 2017; 41:359-66. [PMID: 27581928 DOI: 10.1007/s12038-016-9619-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Diazinon is a widely used organophosphorus insecticide often detected in the environment. A highly effective diazinon-degrading Ralstonia sp. strain DI-3 was isolated from agricultural soil. Strain DI-3 can utilize dimethoate as its sole carbon source for growth and degrade an initial concentration of 100 mg L-1 diazinon to non-detectable levels within 60 h in liquid culture. A small amount of second carbon source as co-substrate could slightly enhance the biodegradation of diazinon. In addition, a less toxic metabolic intermediate formed during the degradation of diazinon mediated by strain DI-3 was purified using thin-layer chromatography (TLC) and identified based on single-crystal Xray diffraction analysis, allowing a degradation pathway for diazinon by pure culture to be proposed. Finally, this is the first providing authentic evidence to describe the metabolite.
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Affiliation(s)
- Guangli Wang
- College of Life Sciences, Huaibei Normal University, Huaibei 235000, P.R of China
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13
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Yang Q, Cai S, Dong S, Chen L, Chen J, Cai T. Biodegradation of 3-methyldiphenylether (MDE) by Hydrogenophaga atypical strain QY7-2 and cloning of the methy-oxidation gene mdeABCD. Sci Rep 2016; 6:39270. [PMID: 27995977 PMCID: PMC5172442 DOI: 10.1038/srep39270] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2016] [Accepted: 11/21/2016] [Indexed: 11/29/2022] Open
Abstract
3-Methyldiphenylether (MDE) is an important alkyl-substituted diphenyl ether compound that is widely used as an intermediate in the synthesis of pyrethroid insecticides. An efficient MDE-degrading strain QY7-2, identified as Hydrogenophaga atypical, was isolated from activated sludge for the first time. Strain QY7-2 can utilize MDE as the sole carbon and energy source and completely mineralize MDE. The degradation pathway of MDE was proposed in the strain through metabolites identification. A gene cluster involving in methy-oxidation of MDE was cloned from QY7-2 and expressed in Escherichia coli BL21 (DE3), and the products were purified by SDS-PAGE. The specific activities of the recombinant enzymes MdeAB, MdeC and MdeD were 113.8 ± 3.5, 274.5 ± 6.2 and 673.4 ± 8.7 nmol min−1 mg−1, respectively. These results provide the biochemical and genetic foundation of microbial degradation pathway of MDE and benefit the bioremediation of MDE-contaminated environments.
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Affiliation(s)
- Qian Yang
- The College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, People's Republic of China
| | - Shu Cai
- Jiangsu Academy of Agriculture Science, Nanjing 210014, People's Republic of China
| | - Shaowei Dong
- The College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, People's Republic of China
| | - Lulu Chen
- The College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, People's Republic of China
| | - Jifei Chen
- The College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, People's Republic of China
| | - Tianming Cai
- The College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, People's Republic of China
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14
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Wang G, Xu D, Xiong M, Zhang H, Li F, Liu Y. Novel degradation pathway and kinetic analysis for buprofezin removal by newly isolated Bacillus sp. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2016; 180:59-67. [PMID: 27208995 DOI: 10.1016/j.jenvman.2016.04.061] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2016] [Revised: 04/25/2016] [Accepted: 04/27/2016] [Indexed: 06/05/2023]
Abstract
Given the intensive and widespread application of the pesticide, buprofezin, its environmental residues potentially pose a problem; yet little is known about buprofezin's kinetic and metabolic behaviors. In this study, a novel gram-positive strain, designated BF-5, isolated from aerobic activated sludge, was found to be capable of metabolizing buprofezin as its sole energy, carbon, and nitrogen source. Based on its physiological and biochemical characteristics, other aspects of its phenotype, and a phylogenetic analysis, strain BF-5 was identified as Bacillus sp. This study investigated the effect of culture conditions on bacterial growth and substrate degradation, such as pH, temperature, initial concentration, different nitrogen source, and additional nitrogen sources as co-substrates. The degradation rate parameters, qmax, Ks, Ki and Sm were determined to be 0.6918 h(-1), 105.4 mg L(-1), 210.5 mg L(-1), and 148.95 mg L(-1) respectively. The capture of unpublished potential metabolites by gas chromatography-mass spectrometry (GC-MS) analysis has led to the proposal of a novel degradation pathway. Taken together, our results clarify buprofezin's biodegradation pathway(s) and highlight the promising potential of strain BF-5 in bioremediation of buprofezin-contaminated environments.
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Affiliation(s)
- Guangli Wang
- College of Life Sciences, Huaibei Normal University, 235000, Huaibei, China
| | - Dayong Xu
- College of Life Sciences, Huaibei Normal University, 235000, Huaibei, China
| | - Minghua Xiong
- College of Life Sciences, Huaibei Normal University, 235000, Huaibei, China
| | - Hui Zhang
- College of Life Sciences, Huaibei Normal University, 235000, Huaibei, China
| | - Feng Li
- College of Life Sciences, Huaibei Normal University, 235000, Huaibei, China
| | - Yuan Liu
- College of Life Sciences, Huaibei Normal University, 235000, Huaibei, China.
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15
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Yue W, Xiong M, Li F, Wang G. The isolation and characterization of the novel chlorothalonil-degrading strain Paracoccus sp. XF-3 and the cloning of the chd gene. J Biosci Bioeng 2015; 120:544-8. [PMID: 26100322 DOI: 10.1016/j.jbiosc.2015.03.013] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2014] [Revised: 02/02/2015] [Accepted: 03/23/2015] [Indexed: 11/28/2022]
Abstract
Chlorothalonil (CTN) is one of the most widely used fungicides and is often detected in the environment. Here, we report the isolation and characterization of a novel CTN-degrading bacterial strain XF-3 from long-term CTN-contaminated sites and identify it as a strain of the Paracoccus sp. The isolate could utilise CTN as the sole source of carbon and energy for growth. The optimal pH and temperature for degradation by XF-3 were 7.0 and 30°C, respectively. The CTN degradation gene was cloned by PCR. Although the results of a BLAST sequence search indicated that this gene has a 99% similarity with chd (a gene encoding the CTN hydrolytic dehalogenase), its hydrolytic efficiency for CTN was slightly greater than the chd from strain CTN-3. This is the first report of this gene from the genus Paracoccus. Therefore, there is a practical significance and a potential value of the isolated novel strain, XF-3.
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Affiliation(s)
- Wenlong Yue
- Department of Bioengineering, College of Life Sciences, Huaibei Normal University, 235000 Huaibei, Anhui Province, PR China
| | - Minghua Xiong
- Department of Bioengineering, College of Life Sciences, Huaibei Normal University, 235000 Huaibei, Anhui Province, PR China
| | - Feng Li
- Department of Bioengineering, College of Life Sciences, Huaibei Normal University, 235000 Huaibei, Anhui Province, PR China
| | - Guangli Wang
- Department of Bioengineering, College of Life Sciences, Huaibei Normal University, 235000 Huaibei, Anhui Province, PR China.
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16
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Křížek K, Růžička J, Julinová M, Husárová L, Houser J, Dvořáčková M, Jančová P. N-methyl-2-pyrrolidone-degrading bacteria from activated sludge. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2015; 71:776-782. [PMID: 25768226 DOI: 10.2166/wst.2015.031] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
N-methyl-2-pyrrolidone (NMP) is a widely used solvent for many organic compounds and a component found in a vast array of chemical preparations. For this research paper, NMP degrading bacteria were isolated from two samples of activated sludge. They pertained to both Gram-negative and Gram-positive members, and belong to the Pseudomonas, Paracoccus, Acinetobacter and Rhodococcus genera. All the strains utilized 300 mg/L of NMP as the only source of carbon, energy and nitrogen over several days, and they were shown to additionally be able to degrade N-acetylphenylalanine (NAP). The growth of all the isolated strains was recorded at different NMP concentrations, to a maximum of 20 g/L.
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Affiliation(s)
- Karel Křížek
- Department of Environmental Engineering, Faculty of Technology, Tomas Bata University in Zlin, TGM Square 275, 762 72 Zlin, Czech Republic E-mail:
| | - Jan Růžička
- Department of Environmental Engineering, Faculty of Technology, Tomas Bata University in Zlin, TGM Square 275, 762 72 Zlin, Czech Republic E-mail: ; Centre of Polymer Systems, TGM Square 5555, 76001 Zlin, Czech Republic
| | - Markéta Julinová
- Department of Environmental Engineering, Faculty of Technology, Tomas Bata University in Zlin, TGM Square 275, 762 72 Zlin, Czech Republic E-mail: ; Centre of Polymer Systems, TGM Square 5555, 76001 Zlin, Czech Republic
| | - Lucie Husárová
- Department of Environmental Engineering, Faculty of Technology, Tomas Bata University in Zlin, TGM Square 275, 762 72 Zlin, Czech Republic E-mail:
| | - Josef Houser
- Department of Environmental Engineering, Faculty of Technology, Tomas Bata University in Zlin, TGM Square 275, 762 72 Zlin, Czech Republic E-mail:
| | - Marie Dvořáčková
- Department of Environmental Engineering, Faculty of Technology, Tomas Bata University in Zlin, TGM Square 275, 762 72 Zlin, Czech Republic E-mail:
| | - Petra Jančová
- Department of Environmental Engineering, Faculty of Technology, Tomas Bata University in Zlin, TGM Square 275, 762 72 Zlin, Czech Republic E-mail:
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17
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Wang G, Chen X, Yue W, Zhang H, Li F, Xiong M. Microbial degradation of acetamiprid by Ochrobactrum sp. D-12 isolated from contaminated soil. PLoS One 2013; 8:e82603. [PMID: 24386105 PMCID: PMC3873909 DOI: 10.1371/journal.pone.0082603] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2013] [Accepted: 10/25/2013] [Indexed: 11/18/2022] Open
Abstract
Neonicotinoid insecticides are one of the most important commercial insecticides used worldwide. The potential toxicity of the residues present in environment to humans has received considerable attention. In this study, a novel Ochrobactrum sp. strain D-12 capable of using acetamiprid as the sole carbon source as well as energy, nitrogen source for growth was isolated and identified from polluted agricultural soil. Strain D-12 was able to completely degrade acetamiprid with initial concentrations of 0–3000 mg·L−1 within 48 h. Haldane inhibition model was used to fit the special degradation rate at different initial concentrations, and the parameters qmax, Ks and Ki were determined to be 0.6394 (6 h)−1, 50.96 mg·L−1 and 1879 mg·L−1, respectively. The strain was found highly effective in degrading acetamiprid over a wide range of temperatures (25–35°C) and pH (6–8). The effects of co-substrates on the degradation efficiency of acetamiprid were investigated. The results indicated that exogenously supplied glucose and ammonium chloride could slightly enhance the biodegradation efficiency, but even more addition of glucose or ammonium chloride delayed the biodegradation. In addition, one metabolic intermediate identified as N-methyl-(6-chloro-3-pyridyl)methylamine formed during the degradation of acetamiprid mediated by strain D-12 was captured by LC-MS, allowing a degradation pathway for acetamiprid to be proposed. This study suggests the bacterium could be a promising candidate for remediation of environments affected by acetamiprid.
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Affiliation(s)
- Guangli Wang
- College of Life Sciences, Huaibei Normal University, Huaibei, People's Republic of China
- * E-mail:
| | - Xiao Chen
- College of Life Sciences, Huaibei Normal University, Huaibei, People's Republic of China
| | - Wenlong Yue
- College of Life Sciences, Huaibei Normal University, Huaibei, People's Republic of China
| | - Hui Zhang
- College of Life Sciences, Huaibei Normal University, Huaibei, People's Republic of China
| | - Feng Li
- College of Life Sciences, Huaibei Normal University, Huaibei, People's Republic of China
| | - Minghua Xiong
- College of Life Sciences, Huaibei Normal University, Huaibei, People's Republic of China
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