Microbial community dynamics linked to enhanced substrate availability and biogas production of electrokinetically pre-treated waste activated sludge

Effects of electrokinetic and ultrasonication pre-treatment and two-step anaerobic digestion of biowastes on the nitrogen fertiliser value by injection or surface banding to cereal crops

Biogas production from anaerobic digestion (AD) of biowastes is restricted by the recalcitrant nature of many substrates, and this may also reduce the fertiliser value of the produced digestate. The degradability of substrates can potentially be enhanced by physico-chemical pre-treatments before AD, and/or the degradation can be increased by a longer digestion time. In this study, we evaluated the effects of electrokinetic (high voltage) and ultrasonication pre-treatments of biowastes in a two-step AD process on nitrogen fertiliser replacement value (NFRV) of digestates obtained from two biogas plants with contrasting hydraulic retention time (HRT) in the primary AD step. The fertiliser value was tested by direct injection to spring barley and surface-banding to winter wheat, and the ammonium N was ¹⁵N-labelled to evaluate ammonia losses. The electrokinetic pre-treatment step significantly (p < 0.05) increased the NH₄⁺-N/total N in the digestates before the second AD step but had an insignificant effect on the fertiliser value in winter wheat and spring barley. Ultrasonication pre-treatment had also no significant effect on the fertiliser value. The two-step AD significantly (p < 0.001) increased ¹⁵N recoveries and mineral fertiliser equivalence of labelled ammonium-N in winter wheat and reduced ammonia losses, with a significant effect (p < 0.001) observed in digestates sourced from a shorter HRT biogas reactor. The fertiliser equivalence of labelled ammonium-N in the digestates was 80-88% after injection, indicating relatively low N immobilisation with all the digestates. NFRV in the crops was mainly explained by the NH₄⁺-N/total N ratio, C/N ratio and dry matter content of the digestates. The findings suggest that electrokinetic and ultrasonication pre-treatments combined with a second AD step have no considerable impact on the fertiliser value of digestates, whereas a second AD step significantly reduced ammonia losses after application by surface-banding in winter wheat.

A Review of Basic Bioinformatic Techniques for Microbial Community Analysis in an Anaerobic Digester

Biogas production involves various types of intricate microbial populations in an anaerobic digester (AD). To understand the anaerobic digestion system better, a broad-based study must be conducted on the microbial population. Deep understanding of the complete metagenomics including microbial structure, functional gene form, similarity/differences, and relationships between metabolic pathways and product formation, could aid in optimization and enhancement of AD processes. With advancements in technologies for metagenomic sequencing, for example, next generation sequencing and high-throughput sequencing, have revolutionized the study of microbial dynamics in anaerobic digestion. This review includes a brief introduction to the basic process of metagenomics research and includes a detailed summary of the various bioinformatics approaches, viz., total investigation of data obtained from microbial communities using bioinformatics methods to expose metagenomics characterization. This includes (1) methods of DNA isolation and sequencing, (2) investigation of anaerobic microbial communities using bioinformatics techniques, (3) application of the analysis of anaerobic microbial community and biogas production, and (4) restriction and prediction of bioinformatics analysis on microbial metagenomics. The review has been concluded, giving a summarized insight into bioinformatic tools and also promoting the future prospects of integrating humungous data with artificial intelligence and neural network software.

Cloacimonadota metabolisms include adaptations in engineered environments that are reflected in the evolutionary history of the phylum

Phylum Cloacimonadota (previously Cloacimonetes, WWE1) is an understudied bacterial lineage frequently associated with engineered and wastewater systems. Cloacimonadota members were abundant and diverse in metagenomic datasets from a municipal landfill, prompting an examination of phylogenetic relationships, metabolic diversity, and pangenomic dynamics across the phylum, based on the 30 publicly available genomes and 24 new metagenome-assembled genomes (MAGs) from landfill samples. We found that Cloacimonadota have distinct evolutionary histories associated with engineered versus natural environments and identified genomic features and metabolic strategies that correlate to habitat of origin. Metabolic reconstructions for MAGs predict an anaerobic, acetogenic, and mixed fermentative and flavin-bifurcation-based anaerobic respiratory lifestyle for the majority of Cloacimonadota surveyed. Genomes from engineered ecosystems encode a suite of genes not typically found in genomes from natural environments including acetate kinase, genes for cysteine degradation to pyruvate, increased diversity of carbon utilization enzymes, and different mechanisms for generating membrane potential and ATP synthesis. This phylum-level examination also clarifies the distribution of functions previously observed for members of the phylum, where propionate oxidation and reverse TCA cycles are not common components of Cloacimonadota metabolism.

Optimization of electrokinetic pretreatment for enhanced methane production and toxicity reduction from petroleum refinery sludge

This study examined the effect of electrokinetic pretreatment on petroleum sludge (PS) released from the wastewater treatment plants of petrochemical industries for enhanced biodegradation and contaminant removal. The application of electric field on PS through direct current is optimized with the combined variation of applied voltage (40-80 V), exposure duration (20-120 min) and distance between graphite electrodes (8-16 cm) using central composite design-response surface methodology (CCD-RSM). The optimization study revealed significant interaction among the response variables to obtain an optimum condition (60 V, 83.5 min, 11.6 spacing) for maximization of solubilization in terms of soluble chemical oxygen demand (230% increment against untreated) and volatile fatty acids (172% increment against untreated) concentrations for accelerated hydrolysis of complex PS. BMP batch assays were performed at different inoculum and sludge ratios (0.3, 0.4, 0.5 and 0.7) based on volatile solids content after pretreatment at the optimized condition which resulted in accumulated methane ranging from 5.16 to 6.61 L/gVS_added (untreated - 3.9 L/gVS_added). The mixing ratio of 0.4 showed the maximum methane enhancement of 69.2% compared to untreated. The maximum removal of organic content (62.8%), oil and grease (71.74%), and total petroleum hydrocarbon (52.9%) were also observed for the mixing ratio of 0.4. The FTIR study showed the efficacy in hydrocarbon dissociation and decomposition after pretreatment of PS. The net energy gain (3508 kJ) and phytotoxicity reduction of batch digestate after the anaerobic digestion suggest the economic feasibility and decontamination efficiency of the electrokinetic pretreatment technique respectively. Further research could be performed to evaluate the viability of this pretreatment for enhanced methane recovery at field-scale levels to relate to these lab-scale postulations.

Perspectives on microbial community in anaerobic digestion with emphasis on environmental parameters: A systematic review

This paper review is aiming to comprehensively identify and appraise the current available knowledge on microbial composition and microbial dynamics in anaerobic digestion with focus on the interconnections between operational parameters and microbial community. We systematically searched Scopus, Web of Science, pubmed and Embase (up to August 2019) with relative keywords to identify English-language studies published in peer-reviewed journals. The data and information on anaerobic reactor configurations, operational parameters such as pretreatment methods, temperature, trace elements, ammonia, organic loading rate, and feedstock composition and their association with the microbial community and microbial dynamics were extracted from eligible articles. Of 306 potential articles, 112 studies met the present review objectives and inclusion criteria. The results indicated that both aceticlastic and hydrogenotrophic methanogenesis are dominant in anaerobic digesters and their relative composition is depending on environmental conditions. However, hydrogenotrophic methanogens are more often observed in extreme conditions due to their higher robustness compared to aceticlastic methangoens. Firmicutes and Bacteroidetes phyla are most common fermentative bacteria of the acidogenic phase. These bacteria secrete lytic enzymes to degrade organic matters and are able to survive in extreme conditions and environments due to their spores. In addition, among archaea Methanosaeta, Methanobacterium, and Methanosarcinaceae are found at high relative abundance in anaerobic digesters operated with different operational parameters. Overall, understanding the shifts in microbial composition and diversity as results of operational parameters variation in anaerobic digestion process would improve the stability and process performance.

Development of an alkaline/acid pre-treatment and anaerobic digestion (APAD) process for methane generation from waste activated sludge

Anaerobic sludge digesters are biorefineries for energy recovery from waste activated sludge (WAS) via methane production, in which disintegration of floc structure and microbial cells is a major challenge in releasing extracellular polymeric substances (EPS) and cytoplasmic macromolecules for subsequent hydrolysis and fermentation. Here, we developed a new process combining alkaline/acid pre-treatments and anaerobic digestion (APAD) to improve sludge digestion. Both alkaline and acid pre-treatments effectively disintegrated the floc structure and microbial cells to release sludge organic contents. Under the optimized alkaline/acid pre-treatment condition, carbon removal achieved 52.8 ± 1.7% in APAD digesters, in contrast to 30.9 ± 2.2% and 42.4 ± 1.6% in anaerobic digesters fed with fresh WAS (control-AD) and thermal pre-treated sludge (thermal-AD), respectively. Both alkaline/acid and thermal pre-treatments largely shifted sludge community composition and function, but in distinct ways, possibly due to their different sludge constitutes (i.e., dissolved organic matter and NaCl). Correspondingly, microbial network analysis identified three modules with varied keystone taxa and interaction patterns in the three digesters. Life cycle assessment showed the comparable environmental impacts of APAD, thermal-AD and control-AD. In all, this study provided a new solution for WAS treatment and insights into impact of sludge pre-treatments on sludge digestion microbiome.

Biological pretreatment enhances the activity of functional microorganisms and the ability of methanogenesis during anaerobic digestion

Biological pretreatment can increase the methane production of anaerobic digestion. In this study, stover was pretreated via microbial consortium prior to anaerobic digestion; through 16S rRNA gene and 16S rRNA amplicon sequencing and metatranscriptomic analysis, and the effects of the pretreatment on the microbial community and critical factors of the increased methane production were studied. Microbial community structure was less affected by the pretreatment, which ensures the stable performance of anaerobic digestion. The methane production increased by 62.85% at the peak phase compared to the untreated stover. The activity of Methanosaeta increased from 2.0% to 10.1%, significantly enhancing the ability of the community to capture acetic acid and reduce CO₂ to methane. The main contribution to the increase in methane production was a unique acetyl-CoA synthetase, which showed significant up-regulation (121.8%). This research demonstrated the importance of Methanosaeta and its unique metabolic pathways in anaerobic digestion utilizing a biological pretreatment.

Importance of inoculum source and initial community structure for biogas production from agricultural substrates

This study evaluated the importance of inoculum source for start-up and operation of biogas processes. Three different inocula with different community structure were used to initiate six laboratory continuous stirred tank reactor (CSTR) processes operated with a grass manure mixture as substrate. The processes were evaluated by chemical and microbiological analysis, by targeting the overall bacterial community and potential cellulose-degrading bacteria. As expected, the results showed a large difference in community structure in the inocula and in process performance during the first hydraulic retention time (HRT). However, the performance and overall microbial community structure became similar in the reactors over time. An inoculum from a high-ammonia process, characterized by low diversity and low degradation efficiency, took the longest time to reach stability and final methane yield. The overall bacterial community was mainly shaped by the operating conditions but, interestingly, potential cellulose-degrading bacteria seemed mainly to originate from the substrate.

Phase separation and microbial distribution in the hyperthermophilic-mesophilic-type temperature-phased anaerobic digestion (TPAD) of waste activated sludge (WAS)

In order to investigate the phase separation and microbial distribution in the TPAD, the conventional thermophilic-mesophilic type (TM-TPAD) and the hyperthermophilic-mesophilic type (HM-TPAD) were operated with a single-stage mesophilic anaerobic digestion (MAD) as control. HM-TPAD accomplished the volatile solids destruction 14.5% higher than MAD. Calculating conversion efficiencies distinguished the separation of acidogenic and methanogenic phases in HM-TPAD, which was not found in TM-TPAD. The differences on microbial distributions also reflected the phase separation in HM-TPAD. The protein degraders, Coprothermobacter had higher abundance in the first stage than the second stage of HM-TPAD but it had similar abundance between the two stages of TM-TPAD. Also, the archaeal communities from the two stages of HM-TPAD shared the least similarity but those from the two stages of TM-TPAD were closely similar.

Effect of Nickel Levels on Hydrogen Partial Pressure and Methane Production in Methanogens

Hydrogen (H₂) consumption and methane (CH₄) production in pure cultures of three different methanogens were investigated during cultivation with 0, 0.2 and 4.21 μM added nickel (Ni). The results showed that the level of dissolved Ni in the anaerobic growth medium did not notably affect CH₄ production in the cytochrome-free methanogenic species Methanobacterium bryantii and Methanoculleus bourgensis MAB1, but affected CH₄ formation rate in the cytochrome-containing Methanosarcina barkeri grown on H₂and CO₂. Methanosarcina barkeri also had the highest amounts of Ni in its cells, indicating that more Ni is needed by cytochrome-containing than by cytochrome-free methanogenic species. The concentration of Ni affected threshold values of H₂ partial pressure (pH₂) for all three methanogen species studied, with M. bourgensis MAB1 reaching pH₂ values as low as 0.1 Pa when Ni was available in amounts used in normal anaerobic growth medium. To our knowledge, this is the lowest pH₂ threshold recorded to date in pure methanogen culture, which suggests that M.bourgensis MAB1 have a competitive advantage over other species through its ability to grow at low H₂ concentrations. Our study has implications for research on the H₂-driven deep subsurface biosphere and biogas reactor performance.