Fluorescent "on-off-on" switching sensor based on CdTe quantum dots coupled with multiwalled carbon nanotubes@graphene oxide nanoribbons for simultaneous monitoring of dual foreign DNAs in transgenic soybean

Simultaneous detection of CaMV35S and NOS using fluorescence sensors with dual-emission silver nanoclusters and catalytic hairpin amplification strategy

A dual-emission fluorescent biosensing method was developed for simultaneous determination of CaMV35S and NOS in genetically modified (GM) plants. Two designed hairpin DNA (H1, H2) sequences were used as templates to synthesize H1-AgNCs (λex = 570 nm, λem = 625 nm) and H2-AgNCs (λex = 470 nm, λem = 555 nm). By using H1-AgNCs and H2-AgNCs as dual-signal tags, combined with signal amplification strategy of magnetic separation to reduce background signal and an enzyme-free catalytic hairpin assembly (CHA) signal amplification strategy, a novel multi-target fluorescent biosensor was fabricated to detect multiple targets based on FRET between signal tags (donors) and magnetic Fe3O4 modified graphene oxide (Fe3O4@GO, acceptors). In the presence of the target NOS and CaMV35S, the hairpin structures of H1 and H2 can be opened respectively, and the exposed sequences will hybridize with the G-rich hairpin sequences HP1 and HP2 respectively, displacing the target sequences to participate in the next round of CHA cycle. Meanwhile, H1-HP1 and H2-HP2 double-stranded DNA sequences (dsDNA) were formed, resulting in the desorption of dsDNA from the surface of Fe3O4@GO due to weak π-π interaction between dsDNA and Fe3O4@GO and leading to the fluorescence recovery of AgNCs. Under optimal conditions, the linear ranges of this fluorescence sensor were 5 ~ 300 nmol L-1 for NOS and 5 ~ 200 nmol L-1 CaMV35S, and the LODs were 0.14 nmol L-1 and 0.18 nmol L-1, respectively. In addition, the fluorescence sensor has good selectivity for the detection of NOS and CaMV35S in GM soybean samples, showing the potential applications in GM screening.

Smartphone-assisted lab-in-a-tube device using gold nanocluster-based aptasensor for detection of MUC1-overexpressed tumor cells

Developing smartphone technology for point-of-care diagnosis is one of the current favorable trends in the field of biosensors. In fact, using smartphones can provide better accessibility and facility for rapid diagnosis of diseases. On the other hand, the detection of circulating tumor cells (CTCs) is one of the recent methods for the early diagnosis of cancer. Here, a new smartphone-assisted lab-in-a-tube device is introduced for the detection of Mucin 1 (MUC1) overexpressed tumor-derived cell lines using gold nanoclusters (GNCs)-based aptasensor. Accordingly, commercial polyurethane (PU) foam was first coated with graphene oxide (GO) to increase its surface area (8.45-fold), and improve its wettability. The surface of the resulting three-dimensional PU-GO (3DPU-GO) platform was then modified by MUC1 aptamer-GNCs to provide the required sensitivity and specificity through a turn "on/off" detection system. The proposed biosensor was first optimized with a spectrophotometer method. Afterward, findings were evaluated based on the red color intensity of the lab-in-a-tube system; and indicated the high ability of the biosensor for detection of MUC1-overexpressed tumor cell lines in the range of 250-20,000 cells mL^-1 with a limit of detection of 221 cells mL^-1. In addition, the developed biosensor showed a decent selectivity against positive-control cell lines (MCF-7, and HT-29) in comparison to negative-control cell lines (HEK293, and L929). Notably, the results represented good accordance with reference methods including spectroscopy devices. Ultimately, the results of this work bring a new perspective to the field of point-of-care detection and can be considered in future biosensors.

A "bottle-around-ship" method to encapsulated carbon nitride and CdTe quantum dots in ZIF-8 as the dual emission fluorescent probe for detection of mercury (II) ion

A facile and efficient "bottle-around-ship" approach for preparing the ratiometric fluorescent probe has been developed by encapsulating the red-colored fluorescence CdTe quantum dots (QDs) and blue-colored fluorescence graphitic carbon nitride quantum dots (g-CNQDs) into the zeolitic imidazolate metal-organic frameworks (ZIF-8) in one step. At a single excitation of 360 nm, the obtained probe ZIF-8@g-CNQD/CdTe shows the dual-emission peaked at 450 and 633 nm, respectively. The red emission of CdTe QDs is selectively quenched by the Hg²⁺, whereas the blue fluorescence of g-CNQDs as an internal reference is insensitive, resulting in an apparent color transformation from pink to blue for special recognition of Hg²⁺. By this approach, the relative fluorescence intensity ratio (F₆₃₃/F₄₅₀) decreased linearly with increasing Hg²⁺ concentration in the 0.2-3.5 μM range with a low limit of detection (LOD) of ~ 46 nM. Therefore, we demonstrate that this "bottle-around-ship" process provides a new strategy for the construction of ratiometric fluorescent Hg²⁺ probes with good simplicity, high efficiency, and excellent stabilities. Moreover, the obtained Hg²⁺ fluorescent probe shows good results in the detection of actual samples.

Detection of Hg2+ by a Dual-Fluorescence Ratio Probe Constructed with Rare-Earth-Element-Doped Cadmium Telluride Quantum Dots and Fluorescent Carbon Dots

Quantum dots (QDs) and carbon quantum dots (CDs) are classes of zero-dimensional materials whose sizes can be ≤10 nm. They exhibit excellent optical properties and are widely used to prepare fluorescent probes for qualitative and quantitative detection of test objects. In this article, we used cerium chloride as the cerium source and used the in situ doped cerium (rare-earth element) to develop cadmium telluride (CdTe) quantum dots following the aqueous phase method. CdTe: Ce quantum dots were successfully synthesized. The solution of CdTe:Ce QDs was mixed with the CD solution prepared following the green microwave method to form a ratio fluorescence sensor that can be potentially used for the selective detection of mercury ions (Hg²⁺). We used transmission electron microscopy, X-ray photoelectron spectroscopy, X-ray diffraction, and other microscopy and spectral characterization techniques to validate that Ce had been successfully doped. The test results on the fluorescence performance revealed that Ce doping enhances the predoped fluorescence performance of the CdTe QDs. We have quantitatively detected Hg²⁺ using a ratiometric fluorescence sensor to show that in the range of 10-60 nM, the fluorescence quenching efficiency increases linearly with the increase in Hg²⁺ concentration. The linear correlation coefficient R ² = 0.9978, and its detection limit was found to be 2.63 nM L^-1. It was observed that other interfering ions do not significantly affect the fluorescence intensity of the probe. According to the results of the blank addition experiment, the developed proportional fluorescence probe can be used for the detection of Hg²⁺ in actual samples.

A review on recent advances in amino acid and peptide-based fluorescence and its potential applications

Fluorescence is widely used to detect functional groups and ions, and peptides are used in various fields due to their excellent biological activity.

Development of dual-emission cluster of Ag atoms for genetically modified organisms detection

A DNA-silver nanocluster with two distinct emissions is devised, in which this unique modality has been exploited to develop a novel nanosensor for transgenic DNA detection. TEM and fluorescence analysis revealed the formation of Ag nanoclusters with a size of around 2 nm, which exhibit dual-emissions at 550 nm (green) and 630 nm (red). Moreover, in the presence of the target sequence (CaMV 35S promoter) from the transgenic plant, the nanoclusters showed an enhancement in the green emission and a reduction in the red emission. This property provided a ratiometric-sensing platform which lacks unavoidable noises. The ratio of green to red fluorescence emission (G/R) of the nanoclusters exhibited a linear relation with the target concentration in the range 10 to 1000 nM. However, the control DNA did not affect this ratio, which clearly confirmed the selective response of the designed nanosensor. This sensing platform had a detection limit of 1.5 nM and identified the DNA of transgenic soybeans within a short time. The mechanistic evaluation of the nanoclusters further revealed the role of protonated cytosine bases in the dual emission behavior. Finally, unique features of the designed nanosensor may improve the current approaches for the development and manufacturing of GMO detection tools.

A peptide nucleic acid-regulated fluorescence resonance energy transfer DNA assay based on the use of carbon dots and gold nanoparticles

A convenient fluorometric method was developed for specific determination of DNA based on peptide nuclei acid (PNA)-regulated fluorescence resonance energy transfer (FRET) between carbon dots (CDs) and gold nanoparticles (AuNPs). In this system, CDs that display lake blue fluorescence with excitation/emission maxima at 345/445 nm were used as fluorometric reporter, while AuNPs were used as fluorescence nanoquencher. A neutral PNA probe, which is designed to recognize the target DNA, was used as a coagulant to control the dispersion and aggregation of AuNPs. Without DNA, PNA can induce immediate AuNP aggregation, thus leading to the recovery of the FRET-quenched fluorescence emission of CDs. However, the addition of the complementary target DNA can protect AuNPs from being aggregated due to the formation of DNA/PNA complexes, which subsequently produces a high fluorescence quenching efficiency of CDs by dispersed AuNPs. Under optimized conditions, quantitative evaluation of DNA was achieved in a linear range of 5-100 nM with a detection limit of 0.21 nM. This method exhibited an excellent specificity towards fully matched DNA. In addition, the application of this assay for sensitive determination of DNA in cell lysate demonstrates its potential for bioanalysis and biodetection. Graphical abstract A simple fluorometric biosensor for specific detection of DNA was developed based on peptide nuclei acid (PNA)-regulated fluorescence resonance energy transfer (FRET) between carbon dots (CDs) and gold nanoparticles (AuNPs).

Colorimetric biosensing of nopaline synthase terminator using Fe3O4@Au and hemin-functionalized reduced graphene oxide

In this paper, we present a simple and label-free colorimetric biosensor for detection of the nopaline synthase (NOS) terminator in genetically modified (GM) plants. The "signal on" colorimetric biosensor was developed using a nanocomposite consisted of gold nanoparticles doped magnetic Fe₃O₄ nanoparticles (Fe₃O₄@Au NP), capture probe DNA (cDNA), and hemin-functionalized reduced graphene oxide nanosheets (H-GN). The nanocomposite was successfully prepared by means of Au-S bonds and the strong π interactions between cDNA and H-GN. The sensing approach is based on the excellent peroxidase-mimicking activity of H-GN and its different electrostatic interactions with single-stranded DNA (ssDNA) and double-stranded DNA (dsDNA). In presence of the target NOS, the cDNA in the nanocomposite will hybridize with its complementary sequence, and form dsDNA structure. Due to the weak π interactions between dsDNA and H-GN, a portion of H-GN will be released from the surface of Fe₃O₄@Au NPs and transferred into solution. After magnetic separation was performed, the supernatant was incubated with 3,3',5,5'-tetramethylbenzidine (TMB) in the presence of H₂O₂. The released H-GN can catalyze the oxidation reaction of TMB and turn the colorless solution blue. This "signal-on" colorimetric biosensor shows a broad linear range of 0.5-100 nM for the target NOS, with a 0.19 nM detection limit. The application of the biosensor for determination of NOS segments in samples of GM and non-GM tomatoes shows that it can discriminate between GM and non-GM plants. The reliability of the method for samples of NOS-spiked GM tomato suggests satisfactory recoveries in the range of 93.6%-94.2%.

Simultaneous detection of TNOS and P35S in transgenic soybean based on magnetic bicolor fluorescent probes

A magnetic-separation-dual-targets fluorescent biosensor was fabricated to detect terminator nopaline synthase (TNOS) and promoter of cauliflower mosaic virus 35s (P35S) in transgenic soybean based on incorporation of bicolor CdTe quantum dots carried by silica nanospheres. In this protocol, the fixed probes for TNOS or P35S were magnetized firstly with Fe3O4@Au magnetic nanosphere by Au-S covalent bonding to achieve magnetized probes. Meanwhile, the capture probes for TNOS or P35S were functionalized with green or red fluorescent microspheres respectively to obtain fluorescently-labeled probes, which could emit relative strong green or red fluorescent signal. Two terminals of TNOS or P35S were recognized by magnetized probes and fluorescently-labeled probes respectively to form the sandwiched structures in the process of biosensor development subsequently, and it was separated by a magnet instantly. The fluorescence intensities of remnant supernatant were measured and analyzed accordingly to achieve simultaneous detection of TNOS and P35S. This biosensor exhibited a good dynamic range, low limit of detection and excellent selectivity in detecting transgenic soybean.

Ultrasensitive voltammetric and impedimetric aptasensor for diazinon pesticide detection by VS2 quantum dots-graphene nanoplatelets/carboxylated multiwalled carbon nanotubes as a new group nanocomposite for signal enrichment

Polluted water and groundwater resources contaminated by pesticides are among the most important environmental distresses. Therefore, a simple, ultrasensitive, and selective electrochemical aptasensor is proposed for diazinon (DZN) determination as an organophosphorus compound. The vanadium disulfide quantum dots (VS₂QDs) were synthesized by a facile hydrothermal method and doped on the graphene nanoplatelets/carboxylated multiwalled carbon nanotubes (GNP/CMWCNTs) as a new group of nanocomposite. The prepared nanocomposite (VS₂QDs-GNP/CMWCNTs) on a glassy carbon electrode (GCE) was incubated with the DZN binding aptamer (DZBA) through electrostatic interaction (GCE/VS₂QDs-GNP/CMWCNTs/DZBA). The modified electrode was used for the low detection of DZN by monitoring the oxidation of [Fe(CN)6]^3-/4- as the redox probe. The characterizations of the modified electrode were performed by several electrochemical methods include: cyclic voltammetry (CV), differential pulse voltammetry (DPV), and electrochemical impedance spectroscopy (EIS). Also, the prepared nanocomposite was characterized with field emission scanning electron microscopy (FE-SEM), transmission electron microscopy (TEM), UV-Vis absorption spectroscopy, fourier transform infrared (FT-IR), fluorescence emission spectroscopy, dynamic light scattering (DLS), elemental mapping, and energy dispersive spectroscopy (EDS). The DZBA selectively adsorbs DZN on the modified electrode, leading to a decrease and increase in the current of DPV and charge transfer resistance (R_CT) of EIS, respectively, as analytical signals. The developed electrochemical aptasensor at the optimal conditions have low limits of detection (LOD) equal to 1.1 × 10^-14 and 2.0 × 10^-15 mol L^-1 with wide dynamic ranges of 5.0 × 10^-14-1.0 × 10^-8 mol L^-1 and 1.0 × 10^-14-1.0 × 10^-8 mol L^-1 for DPV and EIS calibration curves, respectively. Finally, this aptasensor had good selectivity, stability, reproducibility, and feasibility for the DZN detection in various real samples.

A high-performance histidine-functionalized MWCNT-GONR/Co–Ni LDH flower cluster structural composite via a microwave synthesis for supercapacitors

A flower cluster structural histidine-functionalized multi-walled carbon nanotube-graphene oxide nanoribbon/Co–Ni LDH (His-MW/LDH) composite was synthesized via the microwave method.

Harnessing multiplex PCR assay targeting specific mitochondrial DNA elements for simultaneous identification of antelope species in Cornu Saigae Tataricae

A multiplex PCR assay was developed to simultaneously differentiate four antelope species and identify adulteration in Cornu Saigae Tataricae. Four novel primer sets were designed with high inter-species specificity and intra-species stability. Limit of detection was estimated to be 10 ng of genomes. When a mixture of antelope hornand fake species was assayed, it exhibited powerful differentiation capability. 5 out of 12 batches of commercialproducts were identified to be counterfeited or adulterated with Ovis aries Linnaeus and/or Capra hircus Linnaeus. It is readily applicable in routine analysis for identification of sham or adulterants of Cornu Saigae Tataricae.

Ultrasensitive electrochemical genosensor for detection of CaMV35S gene with Fe3O4-Au@Ag nanoprobe

We report an attomolar sensitive electrochemical genosensor for the detection of cauliflower mosaic virus 35S (CaMV35S) gene. The sandwich-type genosensor uses gold-silver core-shell (Au@Ag)-loaded iron oxide (Fe₃O₄) nanocomposite (Fe₃O₄-Au@Ag) as label of signal DNA probe (sDNA). Electrochemical sensing is accomplished at interface of electrodeposited AuNPs and carboxylated multiwalled carbon nanotubes-modified glassy carbon electrode through the specific interaction between the capture probe and target CaMV35S (tDNA), and tDNA and the labeled sDNA. The detection sensitivity was improved by the amplified reduction signal of hydrogen peroxide (H₂O₂), which takes advantage of the enhanced electrocatalytic activity of Fe₃O₄-Au@Ag. Under the optimal experimental conditions, an ultralow limit of detection was calculated to be 1.26 × 10^-17 M (S/N = 3), and the blank value subtracted reduction signal of H₂O₂ of the sensor increased linearly with the logarithm of CaMV35S concentration over a wide range (1 × 10^-16 M to 1 × 10^-10 M). This genosensor displayed excellent stability, selectivity and reproducibility, and was successful in detecting the target CaMV35S in genetically modified tomato samples.

Target-driven switch-on fluorescence aptasensor for trace aflatoxin B1 determination based on highly fluorescent ternary CdZnTe quantum dots

Development of sensitive methods for trace aflatoxin B1 (AFB1) determination is of great significance due to its high toxicity and carcinogenicity. Herein, 3-mercaptopropionic acid (MPA)-capped ternary CdZnTe quantum dots (QDs) have been prepared via a simple hydrothermal route. We found that they exhibited enhanced intensity when benchmarked against their binary counterpart CdTe QDs. On this basis, a target-driven switch-on fluorescence aptasensor for trace AFB1 determination has been developed by employing the fluorescence resonance energy transfer (FRET) between the CdZnTe QDs and Au nanoparticles (AuNPs) pair. In the detection diagram, amino group-functionalized aptamers against AFB1 were firstly labelled with the CdZnTe QDs donors coated on silica nanospheres while the AuNPs acceptors were bioconjugated with the thiol group-modified complementary DNA (cDNA) of aptamer. By taking advantage of the DNA hybridization of aptamer and cDNA, the CdZnTe QDs (energy donor) and AuNPs (energy acceptor) were brought into close proximity, thereby leading to the occurrence of FRET during the aptasensor fabrication. When the aptasensor was incubated with AFB1, the specific binding between aptamer and target resulted in the detachment of AuNPs acceptors. This behavior would disturb the FRET process and led to the subsequent fluorescence recovery of CdZnTe QDs. Such designed aptasensor showed an increased fluorescence recovery upon the increasing concentration of AFB1 over a broad range of 50 pg mL^-1 - 100 ng mL^-1 and succeeded in spiked peanut samples. The proposed aptasensor is separation-free and easy-to-use, which might open up new possibilities in aptasensor fabrication by employing the novel CdZnTe QDs-AuNPs pair.

Graphene-Based Materials for Biosensors: A Review

The advantages conferred by the physical, optical and electrochemical properties of graphene-based nanomaterials have contributed to the current variety of ultrasensitive and selective biosensor devices. In this review, we present the points of view on the intrinsic properties of graphene and its surface engineering concerned with the transduction mechanisms in biosensing applications. We explain practical synthesis techniques along with prospective properties of the graphene-based materials, which include the pristine graphene and functionalized graphene (i.e., graphene oxide (GO), reduced graphene oxide (RGO) and graphene quantum dot (GQD). The biosensing mechanisms based on the utilization of the charge interactions with biomolecules and/or nanoparticle interactions and sensing platforms are also discussed, and the importance of surface functionalization in recent up-to-date biosensors for biological and medical applications.

An electricity-fluorescence double-checking biosensor based on graphene for detection of binding kinetics of DNA hybridization

In this paper, an electricity-fluorescence double-checking biosensor based on graphene materials has been presented for detection of DNA hybridization kinetics.