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Wang Y, Zhu L, Guo P, Zhang Y, Lan X, Xu W. Research progress of All-in-One PCR tube biosensors based on functional modification and intelligent fabrication. Biosens Bioelectron 2024; 246:115824. [PMID: 38029707 DOI: 10.1016/j.bios.2023.115824] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 10/30/2023] [Accepted: 11/06/2023] [Indexed: 12/01/2023]
Abstract
PCR amplification technology is the cornerstone of molecular biology. All-in-One PCR tube, as an emerging integrated device, is booming in biosensors application. All-in-One PCR tube biosensors are integrated PCR tubes designed for signal recognition, signal amplification or signal output. They enable "one-pot" detection within functionally modified and intelligently fabricated PCR tubes, effectively overcoming the limitations of conventional PCR applications, like complex procedural steps, risk of contamination and so on. Based on this, the review article summarizes the recent advance of All-in-One PCR tube biosensors for the first time as well as systematically categorizes five approaches of functional modification, three types of intelligent fabrication and relevant property characterization techniques. More emphasis is placed on the review of five ways of functional modification, including physical modification, chemical modification, UV photografting surface treatment, plasma surface modification, and layer-by-layer assembly coating. Moreover, All-in-One PCR tube biosensors covering different recognition elements range from small molecules to protein are detailed discussed on principle of sensing, providing a deeper understanding of the design and application of All-in-One-tube biosensor. Last, the future opportunities and challenges in this fascinating field are also deliberated.
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Affiliation(s)
- Yanhui Wang
- Key Laboratory of Precision Nutrition and Food Quality, Beijing Laboratory for Food Quality and Safety, Department of Nutrition and Health, China Agricultural University, Beijing, 100191, China
| | - Longjiao Zhu
- Key Laboratory of Precision Nutrition and Food Quality, Beijing Laboratory for Food Quality and Safety, Department of Nutrition and Health, China Agricultural University, Beijing, 100191, China
| | - Peijin Guo
- Key Laboratory of Precision Nutrition and Food Quality, Beijing Laboratory for Food Quality and Safety, Department of Nutrition and Health, China Agricultural University, Beijing, 100191, China
| | - Yangzi Zhang
- Key Laboratory of Precision Nutrition and Food Quality, Beijing Laboratory for Food Quality and Safety, Department of Nutrition and Health, China Agricultural University, Beijing, 100191, China
| | - Xinyue Lan
- Key Laboratory of Precision Nutrition and Food Quality, Beijing Laboratory for Food Quality and Safety, Department of Nutrition and Health, China Agricultural University, Beijing, 100191, China
| | - Wentao Xu
- Key Laboratory of Precision Nutrition and Food Quality, Beijing Laboratory for Food Quality and Safety, Department of Nutrition and Health, China Agricultural University, Beijing, 100191, China.
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He J, Li H, Mai J, Ke Y, Zhai C, Li JJ, Jiang L, Shen G, Ding X. Profiling extracellular vesicle surface proteins with 10 µL peripheral plasma within 4 h. J Extracell Vesicles 2023; 12:e12364. [PMID: 37654045 PMCID: PMC10471920 DOI: 10.1002/jev2.12364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 07/19/2023] [Accepted: 08/22/2023] [Indexed: 09/02/2023] Open
Abstract
Extracellular vesicle (EV) surface proteins, expressed by primary tumours, are important biomarkers for early cancer diagnosis. However, the detection of these EV proteins is complicated by their low abundance and interference from non-EV components in clinical samples. Herein, we present a MEmbrane-Specific Separation and two-step Cascade AmpLificatioN (MESS2CAN) strategy for direct detection of EV surface proteins within 4 h. MESS2CAN utilises novel lipid probes (long chains linked by PEG2K with biotin at one end, and DSPE at the other end) and streptavidin-coated magnetic beads, permitting a 49.6% EV recovery rate within 1 h. A dual amplification strategy with a primer exchange reaction (PER) cascaded by the Cas12a system then allows sensitive detection of the target protein at 10 EV particles per microliter. Using 4 cell lines and 90 clinical test samples, we demonstrate MESS2CAN for analysing HER2, EpCAM and EGFR expression on EVs derived from cells and patient plasma. MESS2CAN reports the desired specificity and sensitivity of EGFR (AUC = 0.98) and of HER2 (AUC = 1) for discriminating between HER2-positive breast cancer, triple-negative breast cancer and healthy donors. MESS2CAN is a pioneering method for highly sensitive in vitro EV diagnostics, applicable to clinical samples with trace amounts of EVs.
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Affiliation(s)
- Jie He
- Department of Anesthesiology and Surgical Intensive Care Unit School of Medicine and School of Biomedical EngineeringXinhua Hospital, Shanghai Jiao Tong UniversityShanghaiChina
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized MedicineShanghai Jiao Tong UniversityShanghaiChina
| | - Hengyu Li
- Department of Breast and Thyroid SurgeryChanghai Hospital, Naval Military Medical UniversityShanghaiChina
| | - John Mai
- Alfred E. Mann Institute for Biomedical EngineeringUniversity of Southern CaliforniaLos AngelesCaliforniaUSA
| | - Yuqing Ke
- Department of Anesthesiology and Surgical Intensive Care Unit School of Medicine and School of Biomedical EngineeringXinhua Hospital, Shanghai Jiao Tong UniversityShanghaiChina
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized MedicineShanghai Jiao Tong UniversityShanghaiChina
| | - Chunhui Zhai
- Department of Anesthesiology and Surgical Intensive Care Unit School of Medicine and School of Biomedical EngineeringXinhua Hospital, Shanghai Jiao Tong UniversityShanghaiChina
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized MedicineShanghai Jiao Tong UniversityShanghaiChina
| | - Jiao Jiao Li
- School of Biomedical Engineering Faculty of Engineering and ITUniversity of Technology SydneySydneyNSWAustralia
| | - Lai Jiang
- Department of Anesthesiology and Surgical Intensive Care Unit School of Medicine and School of Biomedical EngineeringXinhua Hospital, Shanghai Jiao Tong UniversityShanghaiChina
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized MedicineShanghai Jiao Tong UniversityShanghaiChina
| | - Guangxia Shen
- Department of Anesthesiology and Surgical Intensive Care Unit School of Medicine and School of Biomedical EngineeringXinhua Hospital, Shanghai Jiao Tong UniversityShanghaiChina
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized MedicineShanghai Jiao Tong UniversityShanghaiChina
| | - Xianting Ding
- Department of Anesthesiology and Surgical Intensive Care Unit School of Medicine and School of Biomedical EngineeringXinhua Hospital, Shanghai Jiao Tong UniversityShanghaiChina
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized MedicineShanghai Jiao Tong UniversityShanghaiChina
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Niu P, Jiang J, Liu K, Wang S, Jing J, Xu T, Wang T, Liu Y, Liu T. Fiber-integrated WGM optofluidic chip enhanced by microwave photonic analyzer for cardiac biomarker detection with ultra-high resolution. Biosens Bioelectron 2022; 208:114238. [PMID: 35390720 DOI: 10.1016/j.bios.2022.114238] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Revised: 02/28/2022] [Accepted: 03/29/2022] [Indexed: 12/30/2022]
Abstract
Cardiac troponin I (cTnI) plays an important role in emergency diagnosis of cardiovascular diseases, which exists predominately in the form of cardiac troponin I-C (cTnI-C) complex. We proposed a fiber-integrated optofluidic chip immunosensor with time-delay-dispersion based microwave photonic analyzer (MPA) for cTnI-C detection. The whispering gallery mode (WGM) fiber probe was fabricated by embedding a polydopamine functionalized hollow glass microsphere (HGMS) into the etched capillary-fiber structure, and the WGMs could be excited through the efficient coupling between the thin-wall capillary and the HGMS. The reflective WGM optofluidic chip functioned as a wavelength tuner to construct fiber ring laser cavity, whose laser output wavelength was cTnI-C concentration-dependent. The tiny wavelength variation of sensing laser was converted into a radio-frequency (RF) response, which was retrieved by measuring the change of RF-domain free spectrum range (FSR) in time-delay-dispersion based MPA, and the quantitative detection of cTnI-C complex can be achieved with high resolution. Experimental results show that this immunosensor had a limit of detection (LOD) of 0.59 ng/mL, and a detection resolution of 1.2 fg/mL. The relative resolving power was 102-104-fold higher than that of others optical fiber cTnI biosensors. The proposed fiber-integrated optofluidic chip provides an innovative lab-on-chip diagnostic tool for myocardial damage.
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Affiliation(s)
- Panpan Niu
- School of Precision Instrument and Opto-electronics Engineering, Tianjin University, Tianjin, 300072, China; Key Laboratory of Opto-electronics Information Technology (Tianjin University), Key Laboratory of Micro Opto-electro Mechanical System Technology (Tianjin University), Ministry of Education, Tianjin, 300072, China; Tianjin Optical Fiber Sensing Engineering Center, Institute of Optical Fiber Sensing of Tianjin University, Tianjin, 300072, China
| | - Junfeng Jiang
- School of Precision Instrument and Opto-electronics Engineering, Tianjin University, Tianjin, 300072, China; Key Laboratory of Opto-electronics Information Technology (Tianjin University), Key Laboratory of Micro Opto-electro Mechanical System Technology (Tianjin University), Ministry of Education, Tianjin, 300072, China; Tianjin Optical Fiber Sensing Engineering Center, Institute of Optical Fiber Sensing of Tianjin University, Tianjin, 300072, China.
| | - Kun Liu
- School of Precision Instrument and Opto-electronics Engineering, Tianjin University, Tianjin, 300072, China; Key Laboratory of Opto-electronics Information Technology (Tianjin University), Key Laboratory of Micro Opto-electro Mechanical System Technology (Tianjin University), Ministry of Education, Tianjin, 300072, China; Tianjin Optical Fiber Sensing Engineering Center, Institute of Optical Fiber Sensing of Tianjin University, Tianjin, 300072, China
| | - Shuang Wang
- School of Precision Instrument and Opto-electronics Engineering, Tianjin University, Tianjin, 300072, China; Key Laboratory of Opto-electronics Information Technology (Tianjin University), Key Laboratory of Micro Opto-electro Mechanical System Technology (Tianjin University), Ministry of Education, Tianjin, 300072, China; Tianjin Optical Fiber Sensing Engineering Center, Institute of Optical Fiber Sensing of Tianjin University, Tianjin, 300072, China
| | - Jianying Jing
- School of Precision Instrument and Opto-electronics Engineering, Tianjin University, Tianjin, 300072, China; Key Laboratory of Opto-electronics Information Technology (Tianjin University), Key Laboratory of Micro Opto-electro Mechanical System Technology (Tianjin University), Ministry of Education, Tianjin, 300072, China; Tianjin Optical Fiber Sensing Engineering Center, Institute of Optical Fiber Sensing of Tianjin University, Tianjin, 300072, China
| | - Tianhua Xu
- School of Precision Instrument and Opto-electronics Engineering, Tianjin University, Tianjin, 300072, China; Key Laboratory of Opto-electronics Information Technology (Tianjin University), Key Laboratory of Micro Opto-electro Mechanical System Technology (Tianjin University), Ministry of Education, Tianjin, 300072, China; Tianjin Optical Fiber Sensing Engineering Center, Institute of Optical Fiber Sensing of Tianjin University, Tianjin, 300072, China
| | - Tong Wang
- School of Precision Instrument and Opto-electronics Engineering, Tianjin University, Tianjin, 300072, China; Key Laboratory of Opto-electronics Information Technology (Tianjin University), Key Laboratory of Micro Opto-electro Mechanical System Technology (Tianjin University), Ministry of Education, Tianjin, 300072, China; Tianjin Optical Fiber Sensing Engineering Center, Institute of Optical Fiber Sensing of Tianjin University, Tianjin, 300072, China
| | - Yize Liu
- School of Precision Instrument and Opto-electronics Engineering, Tianjin University, Tianjin, 300072, China; Key Laboratory of Opto-electronics Information Technology (Tianjin University), Key Laboratory of Micro Opto-electro Mechanical System Technology (Tianjin University), Ministry of Education, Tianjin, 300072, China; Tianjin Optical Fiber Sensing Engineering Center, Institute of Optical Fiber Sensing of Tianjin University, Tianjin, 300072, China
| | - Tiegen Liu
- School of Precision Instrument and Opto-electronics Engineering, Tianjin University, Tianjin, 300072, China; Key Laboratory of Opto-electronics Information Technology (Tianjin University), Key Laboratory of Micro Opto-electro Mechanical System Technology (Tianjin University), Ministry of Education, Tianjin, 300072, China; Tianjin Optical Fiber Sensing Engineering Center, Institute of Optical Fiber Sensing of Tianjin University, Tianjin, 300072, China
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Yan S, Ahmad KZ, Warden AR, Ke Y, Maboyi N, Zhi X, Ding X. One-pot pre-coated interface proximity extension assay for ultrasensitive co-detection of anti-SARS-CoV-2 antibodies and viral RNA. Biosens Bioelectron 2021; 193:113535. [PMID: 34399194 PMCID: PMC8336976 DOI: 10.1016/j.bios.2021.113535] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 07/12/2021] [Accepted: 07/24/2021] [Indexed: 12/11/2022]
Abstract
In the field of in vitro diagnostics, detection of nucleic acids and proteins from biological samples is typically performed with independent platforms; however, co-detection remains a major technical challenge. Specifically, during the coronavirus disease 2019 (COVID-19) pandemic, the ability to simultaneously detect viral RNA and human antibodies would prove highly useful for efficient diagnosis and disease course management. Herein, we present a multiplex one-pot pre-coated interface proximity extension (OPIPE) assay that facilitates the simultaneous recognition of antibodies using a pre-coated antigen interface and a pair of anti-antibodies labeled with oligonucleotides. Following anti-antibody-bound nucleic acid chain extension to form templates in proximity, antibody signals can be amplified, together with that of targeted RNA, via a reverse transcription-polymerase chain reaction. Using four-color fluorescent TaqMan probes, we demonstrate the co-detection of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)-specific antibodies and viral nucleic acids in a single bio-complex sample, including nucleocapsid protein-specific IgG and IgM, and the RNA fragments of RdRp and E genes. The serum detection limit for this platform is 100 fg/mL (0.67 fM) for the anti-SARS-CoV-2 antibody and 10 copies/μL for viral RNA. The OPIPE assay offers a practical and affordable solution for ultrasensitive co-detection of nucleic acids and antibodies from the same trace biological sample without the additional requirement of complicated equipment.
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Affiliation(s)
- Sijia Yan
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200030, China
| | - Khan Zara Ahmad
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200030, China
| | - Antony R Warden
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200030, China
| | - Yuqing Ke
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200030, China
| | - Nokuzola Maboyi
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200030, China
| | - Xiao Zhi
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200030, China
| | - Xianting Ding
- State Key Laboratory of Oncogenes and Related Genes, Institute for Personalized Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200030, China.
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