An integrated NAD+-dependent dehydrogenase-based biosensor for xylose fermentation sample analysis

Directed evolution of linker helix as an efficient strategy for engineering LysR-type transcriptional regulators as whole-cell biosensors

Whole-cell biosensors based on transcriptional regulators are powerful tools for rapid measurement, high-throughput screening, dynamic metabolic regulation, etc. To optimize the biosensing performance of transcriptional regulator, its effector-binding domain is commonly engineered. However, this strategy is encumbered by the limitation of diversifying such a large domain and the risk of affecting effector specificity. Molecular dynamics simulation of effector binding of LysG (an LysR-type transcriptional regulator, LTTR) suggests the crucial role of the short linker helix (LH) connecting effector- and DNA-binding domains in protein conformational change. Directed evolution of LH efficiently produced LysG variants with extended operational range and unaltered effector specificity. The whole-cell biosensor based on the best LysG^E58V variant outperformed the wild-type LysG in enzyme high-throughput screening and dynamic regulation of l-lysine biosynthetic pathway. LH mutations are suggested to affect DNA binding and facilitate transcriptional activation upon effector binding. LH engineering was also successfully applied to optimize another LTTR BenM for biosensing. Since LTTRs represent the largest family of prokaryotic transcriptional regulators with highly conserved structures, LH engineering is an efficient and universal strategy for development and optimization of whole-cell biosensors.

Protein engineering for electrochemical biosensors

The development of electrochemical biosensors has gained tremendous attention. Protein engineering has been applied for enhancing properties of native redox enzymes, such as selectivity, sensitivity, and stability required for applicable biosensors. This review highlights recent advances of protein engineering to improve enzymatic catalysis of biosensors, facilitate electron transfer and enzyme immobilization, and construct allosteric protein biosensors. The pros and cons of different protein engineering strategies are briefly discussed, and perspectives are further provided.

In situ fabrication of urchin-like Cu@carbon nanoneedles based aptasensor for ultrasensitive recognition of trace mercury ion

Mercury ion (Hg²⁺) is a strong toxic heavy ion that causes severe damages to the environment and readily accumulates in the food chain. However, it remains a major challenge to realize a sensitive and precise recognition of Hg²⁺ with a trace concentration for early identifying the pollution source. In this work, a novel electrochemical aptasensor was designed to achieve an ultrasensitive and quantitative detection of trace Hg²⁺, relying on an urchin-like architecture of Cu@carbon nanoneedles (Cu@CNNs) as the electroactive probe. This specific nanostructure was in-situ constructed through a controllable pyrolysis process, serving as a signal magnifier and DNA loading platform owing to its outstanding electrocatalysis and large specific surface areas. Meanwhile, an exonuclease III-assisted cycling amplification strategy was designed to efficiently amplify the signal strength of trace Hg²⁺via the consecutive release of report probes in nicking reaction. This as-prepared Hg²⁺ aptasensor exhibited an ultralow detection limit of 3.7 fM (7 × 10^-6 ppm) and a wide linear range from 10 fM to 10 μM, together with the satisfactory stability and reusability for assay in real water samples. It is highly expected that this Cu@CNNs based aptasensor will have tremendous potentials in the early warning and efficient pollution monitoring of heavy metal ions.