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Guseva EA, Buev VS, Mirzaeva SE, Pletnev PI, Dontsova OA, Sergiev PV. Structure and Composition of Spermatozoa Fibrous Sheath in Diverse Groups of Metazoa. Int J Mol Sci 2024; 25:7663. [PMID: 39062905 PMCID: PMC11276731 DOI: 10.3390/ijms25147663] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2024] [Revised: 07/01/2024] [Accepted: 07/08/2024] [Indexed: 07/28/2024] Open
Abstract
The proper functioning and assembly of the sperm flagella structures contribute significantly to spermatozoa motility and overall male fertility. However, the fine mechanisms of assembly steps are poorly studied due to the high diversity of cell types, low solubility of the corresponding protein structures, and high tissue and cell specificity. One of the open questions for investigation is the attachment of longitudinal columns to the doublets 3 and 8 of axonemal microtubules through the outer dense fibers. A number of mutations affecting the assembly of flagella in model organisms are known. Additionally, evolutionary genomics data and comparative analysis of flagella morphology are available for a set of non-model species. This review is devoted to the analysis of diverse ultrastructures of sperm flagellum of Metazoa combined with an overview of the evolutionary distribution and function of the mammalian fibrous sheath proteins.
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Affiliation(s)
- Ekaterina A. Guseva
- Center of Life Sciences, Skolkovo Institute of Science and Technology, 143025 Skolkovo, Russia; (E.A.G.); (O.A.D.)
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119991 Moscow, Russia
- Faculty of Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia; (V.S.B.); (S.E.M.); (P.I.P.)
| | - Vitaly S. Buev
- Faculty of Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia; (V.S.B.); (S.E.M.); (P.I.P.)
- Faculty of Bioengeneering and Bioinformatics, Lomonosov Moscow State University, 119991 Moscow, Russia
| | - Sabina E. Mirzaeva
- Faculty of Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia; (V.S.B.); (S.E.M.); (P.I.P.)
| | - Philipp I. Pletnev
- Faculty of Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia; (V.S.B.); (S.E.M.); (P.I.P.)
| | - Olga A. Dontsova
- Center of Life Sciences, Skolkovo Institute of Science and Technology, 143025 Skolkovo, Russia; (E.A.G.); (O.A.D.)
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119991 Moscow, Russia
- Faculty of Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia; (V.S.B.); (S.E.M.); (P.I.P.)
- Shemyakin–Ovchinnikov Institute of Bioorganic Chemistry, 117997 Moscow, Russia
| | - Petr V. Sergiev
- Center of Life Sciences, Skolkovo Institute of Science and Technology, 143025 Skolkovo, Russia; (E.A.G.); (O.A.D.)
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119991 Moscow, Russia
- Faculty of Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia; (V.S.B.); (S.E.M.); (P.I.P.)
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Satarić MV, Nemeš T. On the role of calcium diffusion and its rapid buffering in intraflagellar signaling. EUROPEAN BIOPHYSICS JOURNAL : EBJ 2023; 52:705-720. [PMID: 37851099 DOI: 10.1007/s00249-023-01685-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Revised: 09/13/2023] [Accepted: 09/23/2023] [Indexed: 10/19/2023]
Abstract
We have considered the realistic mechanism of rapid Ca2+ (calcium ion) buffering within the wave of calcium ions progressing along the flagellar axoneme. This buffering is an essential part of the Ca2+ signaling pathway aimed at controlling the bending dynamics of flagella. It is primarily achieved by the mobile region of calmodulin molecules and by stationary calaxin, as well as by the part of calmodulin bound to calcium/calmodulin-dependent kinase II and kinase C. We derived and elaborated a model of Ca2+ diffusion within a signaling wave in the presence of these molecules which rapidly buffer Ca2+. This approach has led to a single nonlinear transport equation for the Ca2+ wave that contains the effects brought about by both as necessary buffers for signaling. The presence of mobile buffer calmodulin gives rise to a transport equation that is not strictly diffusive but also exhibits a sink-like effect. We solved straightforwardly the final transport equation in an analytical framework and obtained the implied function of calcium concentration. The effective diffusion coefficient depends on local Ca2+ concentration. It is plausible that these buffers' presence can impact Ca2+ wave speed and shape, which are essential for decoding Ca2+ signaling in flagella. We present the solution of the transport equation for a few specified cases with physiologically reasonable sets of parameters involved.
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Affiliation(s)
- M V Satarić
- Serbian Academy of Science and Arts, Belgrade, Serbia
| | - T Nemeš
- Faculty of Technical Sciences, University of Novi Sad, Novi Sad, Serbia.
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Satarić MV, Nemeš T, Zdravković S. Calcium messages in flagella are faster than messenger particles. Biosystems 2023; 232:105003. [PMID: 37625514 DOI: 10.1016/j.biosystems.2023.105003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 08/17/2023] [Accepted: 08/17/2023] [Indexed: 08/27/2023]
Abstract
Calcium is one of the most versatile messengers for intracellular signaling. In the case of cilia and flagella calcium has the central role in transfer of communications between extracellular stimuli and intracellular formation of frequency modulated signal and their deciphering by target proteins. In this paper, the diffusion of fluorescently or otherwise tagged and un-tagged Ca2+ particles is analyzed by solving the system of pertaining reaction-diffusion equations. We used Fourier transform tools to get asymptotic eigenfunctions for tagged (un-tagged) free and buffered Ca2+ ions. We made some numerical estimations for diffusion coefficients corroborating the fact that messages diffuse faster than Ca2+ messengers. From the best of our knowledge, this is the first time that Ca2+ signaling in living cells is biophysically elaborated within the framework of model presented here. We suggest the experimental assay on the basis of radioactive Ca2+ as tagged probe.
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Affiliation(s)
| | - Tomas Nemeš
- Faculty of Technical Sciences, Novi Sad, Serbia.
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Han L, Rao Q, Yang R, Wang Y, Chai P, Xiong Y, Zhang K. Cryo-EM structure of an active central apparatus. Nat Struct Mol Biol 2022; 29:472-482. [PMID: 35578022 PMCID: PMC9113940 DOI: 10.1038/s41594-022-00769-9] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Accepted: 03/30/2022] [Indexed: 12/13/2022]
Abstract
Accurately regulated ciliary beating in time and space is critical for diverse cellular activities, which impact the survival and development of nearly all eukaryotic species. An essential beating regulator is the conserved central apparatus (CA) of motile cilia, composed of a pair of microtubules (C1 and C2) associated with hundreds of protein subunits per repeating unit. It is largely unclear how the CA plays its regulatory roles in ciliary motility. Here, we present high-resolution structures of Chlamydomonas reinhardtii CA by cryo-electron microscopy (cryo-EM) and its dynamic conformational behavior at multiple scales. The structures show how functionally related projection proteins of CA are clustered onto a spring-shaped scaffold of armadillo-repeat proteins, facilitated by elongated rachis-like proteins. The two halves of the CA are brought together by elastic chain-like bridge proteins to achieve coordinated activities. We captured an array of kinesin-like protein (KLP1) in two different stepping states, which are actively correlated with beating wave propagation of cilia. These findings establish a structural framework for understanding the role of the CA in cilia.
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Affiliation(s)
- Long Han
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA
| | - Qinhui Rao
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA
| | - Renbin Yang
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA
- Center for Molecular Microscopy, Frederick National Laboratory for Cancer Research, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, MD, USA
| | - Yue Wang
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA
| | - Pengxin Chai
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA
| | - Yong Xiong
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA
| | - Kai Zhang
- Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.
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Satarić M, Nemeš T, Tuszynski J. Decoding the Bell-Shaped Calcium Spikes in Phosphorylation Cycles of Flagella. Int J Mol Sci 2022; 23:ijms23073760. [PMID: 35409111 PMCID: PMC8998650 DOI: 10.3390/ijms23073760] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Revised: 03/15/2022] [Accepted: 03/23/2022] [Indexed: 11/16/2022] Open
Abstract
We investigate the messenger role of calcium ions implicated in the regulation of wave-like bending dynamics of flagella. The emphasis is on microtubules of flagellar axoneme serving as nonlinear transmission lines for bell-shaped spikes of calcium ions. The calcium sensitive proteins, such as calmodulin, exhibit activation dependence on the spike train frequency and amplitude. Here, we analyze a Ca2+ decoding module IDA-I1 whose activity is controlled by Ca2+ activated kinase. We find that trains of Ca2+ spikes are advantageous compared to a constant rise in Ca2+ concentration as being more efficient and much less prone to noisy fluctuations.
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Affiliation(s)
- Miljko Satarić
- Faculty of Technical Sciences, University of Novi Sad, 21000 Novi Sad, Serbia; (M.S.); (T.N.)
- Serbian Academy of Sciences and Arts, 11000 Belgrade, Serbia
| | - Tomas Nemeš
- Faculty of Technical Sciences, University of Novi Sad, 21000 Novi Sad, Serbia; (M.S.); (T.N.)
| | - Jack Tuszynski
- Department of Physics, University of Alberta, Edmonton, AB T6G 2R3, Canada
- Correspondence:
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Kalra AP, Eakins BB, Vagin SI, Wang H, Patel SD, Winter P, Aminpour M, Lewis JD, Rezania V, Shankar K, Scholes GD, Tuszynski JA, Rieger B, Meldrum A. A Nanometric Probe of the Local Proton Concentration in Microtubule-Based Biophysical Systems. NANO LETTERS 2022; 22:517-523. [PMID: 34962401 DOI: 10.1021/acs.nanolett.1c04487] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
We show a double-functional fluorescence sensing paradigm that can retrieve nanometric pH information on biological structures. We use this method to measure the extent of protonic condensation around microtubules, which are protein polymers that play many roles crucial to cell function. While microtubules are believed to have a profound impact on the local cytoplasmic pH, this has been hard to show experimentally due to the limitations of conventional sensing techniques. We show that subtle changes in the local electrochemical surroundings cause a double-functional sensor to transform its spectrum, thus allowing a direct measurement of the protonic concentration at the microtubule surface. Microtubules concentrate protons by as much as one unit on the pH scale, indicating a charge storage role within the cell via the localized ionic condensation. These results confirm the bioelectrical significance of microtubules and reveal a sensing concept that can deliver localized biochemical information on intracellular structures.
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Affiliation(s)
- Aarat P Kalra
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States of America
| | - Boden B Eakins
- Department of Electrical and Computer Engineering, University of Alberta, 9107-116 St, Edmonton, Alberta T6G 2 V4, Canada
| | - Sergei I Vagin
- Department of Chemistry, Technical University of Munich, Lichtenbergstraße 4, 85747 Garching bei München, Germany
| | - Hui Wang
- Department of Physics, University of Alberta, 11335 Saskatchewan Dr NW, Edmonton, Alberta T6G 2E1, Canada
| | - Sahil D Patel
- Electrical and Computer Engineering Department, University of California, Santa Barbara, California 93106, United States of America
| | - Philip Winter
- Department of Oncology, University of Alberta, Edmonton, Alberta T6G 1Z2, Canada
| | - Maral Aminpour
- Department of Electrical and Computer Engineering, University of Alberta, 9107-116 St, Edmonton, Alberta T6G 2 V4, Canada
- Department of Oncology, University of Alberta, Edmonton, Alberta T6G 1Z2, Canada
| | - John D Lewis
- Department of Oncology, University of Alberta, Edmonton, Alberta T6G 1Z2, Canada
| | - Vahid Rezania
- Department of Physical Sciences, MacEwan University, Edmonton, Alberta T5J 4S2, Canada
| | - Karthik Shankar
- Department of Electrical and Computer Engineering, University of Alberta, 9107-116 St, Edmonton, Alberta T6G 2 V4, Canada
| | - Gregory D Scholes
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States of America
| | - Jack A Tuszynski
- Department of Physics, University of Alberta, 11335 Saskatchewan Dr NW, Edmonton, Alberta T6G 2E1, Canada
- Department of Oncology, University of Alberta, Edmonton, Alberta T6G 1Z2, Canada
- Department of Mechanical and Aerospace Engineering (DIMEAS), Politecnico di Torino, Torino 10129, Italy
| | - Bernhard Rieger
- Department of Chemistry, Technical University of Munich, Lichtenbergstraße 4, 85747 Garching bei München, Germany
| | - Alkiviathes Meldrum
- Department of Physics, University of Alberta, 11335 Saskatchewan Dr NW, Edmonton, Alberta T6G 2E1, Canada
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Calcium signal transmission by axonemal microtubules as an optimized information pathway in cilia and flagella. J Bioenerg Biomembr 2021; 53:633-641. [PMID: 34537954 DOI: 10.1007/s10863-021-09920-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Accepted: 09/07/2021] [Indexed: 10/20/2022]
Abstract
Calcium plays a key role in signal transduction in eukaryotic cells. Besides controlling local functions of cells calcium ions are responsible for the generation of global signals such as waves and spikes. Pulsatile increases of calcium concentrations are generally considered to have a much higher fidelity of information transfer than simple tonic changes, since they are much less prone to noisy fluctuations. In that respect, it was clearly revealed that Ca2+ has very crucial involvement in many signaling pathways in cilia and flagella. We earlier established a model in which axonemal microtubules exhibit the features of nonlinear polyelectrolitic electric transmissions lines for efficient transport of cations, primarily Ca2+. These microtubules guide accumulated "ionic clods" which serve as the pulsatile signals aimed to regulate pertaining motor proteins, dyneins and kinesis. We here consider such Ca2+ signals in axoneme in the context of Shannon's and Fisher's information theories. It appears that the fast drift of these "ionic clouds" represents the optimized calcium signaling for control of "flagellary beats" as well as intraflagellary transport of proteins essential for the construction, elongation and maintenance of eukaryotic cilia and flagella themselves.
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Calcium signaling modulates the dynamics of cilia and flagella. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2020; 49:619-631. [PMID: 33105487 DOI: 10.1007/s00249-020-01471-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2020] [Accepted: 10/12/2020] [Indexed: 10/23/2022]
Abstract
To adapt to changing environments cells must signal and signaling requires messengers whose concentration varies with time in space. We here consider the messenger role of calcium ions implicated in regulation of the wave-like bending dynamics of cilia and flagella. The emphasis is on microtubules as polyelectrolytes serving as transmission lines for the flow of Ca2+ signals in the axoneme. This signaling is superimposed with a geometric clutch mechanism for the regulation of flagella bending dynamics and our modeling produces results in agreement with experimental data.
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Satarić MV, Nemeš T, Satarić B, Sekulić D, Zdravković S. Calcium ions tune the beats of cilia and flagella. Biosystems 2020; 196:104172. [DOI: 10.1016/j.biosystems.2020.104172] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2020] [Revised: 05/13/2020] [Accepted: 05/13/2020] [Indexed: 01/19/2023]
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