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Inaba H, Hatta K, Matsuura K. Directional Propulsion of DNA Microspheres Based on Light-Induced Asymmetric Growth of Peptide Nanofibers. ACS APPLIED BIO MATERIALS 2021; 4:5425-5434. [PMID: 35006731 DOI: 10.1021/acsabm.1c00146] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Inspired by natural motors, synthetic motors powered by light have emerged as promising platforms for constructing artificial micro/nanorobots. As a concept of light-driven motors, we have previously reported propulsion of giant liposomes driven by light-induced peptide nanofiber growth on the surface, inspired by natural pathogens using external actin polymerization for their propulsion. However, their movement was nondirectional. Here, we used DNA microspheres (also known as nucleospheres) comprising DNA three-way junctions with self-complementary sticky ends as vehicles for directional propulsion by light-induced peptide nanofiber growth. By introducing a peptide-DNA conjugate connected by a photocleavage unit to the surface of nucleospheres, ultraviolet (UV) light irradiation induced the asymmetric peptide nanofiber growth on the surface. Nucleospheres exhibited directional movement away from the light source, showing negative phototaxis. This directional movement was maintained even after the light irradiation was ceased. Our phototactic system helps to better understand the mechanism of natural motors and construct bioinspired motors with controlled movement.
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Affiliation(s)
- Hiroshi Inaba
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Koyama-Minami 4-101, Tottori 680-8552, Japan.,Centre for Research on Green Sustainable Chemistry, Tottori University, Koyama-Minami 4-101, Tottori 680-8552, Japan
| | - Kenji Hatta
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Koyama-Minami 4-101, Tottori 680-8552, Japan
| | - Kazunori Matsuura
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Koyama-Minami 4-101, Tottori 680-8552, Japan.,Centre for Research on Green Sustainable Chemistry, Tottori University, Koyama-Minami 4-101, Tottori 680-8552, Japan
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Long K, Liu Y, Li Y, Wang W. Self-assembly of trigonal building blocks into nanostructures: molecular design and biomedical applications. J Mater Chem B 2021; 8:6739-6752. [PMID: 32686806 DOI: 10.1039/d0tb01128b] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Trigonal molecules have a special triskelion structure similar to clathrin protein, providing great inspiration for constructing artificial nanoassemblies. To date, various synthetic trigonal conjugates have been designed for supramolecular self-assembly, which have demonstrated versatile and controllable self-assembly ability in materials science. Here we will review the design of trigonal (sometimes called three-legged, tripodal, C3-symmetric, or triskelion) building blocks that can self-assemble into various nanostructures and discuss the biomedical applications of the self-assembled nanomaterials.
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Affiliation(s)
- Kaiqi Long
- Department of Pharmacology and Pharmacy, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, China.
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Matsuura K. Synthetic approaches to construct viral capsid-like spherical nanomaterials. Chem Commun (Camb) 2018; 54:8944-8959. [DOI: 10.1039/c8cc03844a] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This feature article describes recent progress in synthetic strategies to construct viral capsid-like spherical nanomaterials using the self-assembly of peptides and/or proteins.
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Affiliation(s)
- Kazunori Matsuura
- Department of Chemistry and Biotechnology
- Graduate School of Engineering
- Tottori University
- Tottori 680-8552
- Japan
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Kamiya Y, Yamada Y, Muro T, Matsuura K, Asanuma H. DNA Microcapsule for Photo-Triggered Drug Release Systems. ChemMedChem 2017; 12:2016-2021. [DOI: 10.1002/cmdc.201700512] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2017] [Revised: 09/21/2017] [Indexed: 12/20/2022]
Affiliation(s)
- Yukiko Kamiya
- Department of Biomolecular Engineering; Graduate School of Engineering; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8603 Japan
- Institute of Materials and Systems for Sustainability; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8603 Japan
| | - Yoshinobu Yamada
- Department of Biomolecular Engineering; Graduate School of Engineering; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8603 Japan
| | - Takahiro Muro
- Department of Biomolecular Engineering; Graduate School of Engineering; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8603 Japan
| | - Kazunori Matsuura
- Department of Chemistry and Biotechnology; Graduate School of Engineering; Tottori University; Koyama-Minami 4-101 Tottori 680-8552 Japan
| | - Hiroyuki Asanuma
- Department of Biomolecular Engineering; Graduate School of Engineering; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8603 Japan
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Matsuura K. Construction of Functional Biomaterials by Biomolecular Self-Assembly. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2017. [DOI: 10.1246/bcsj.20170133] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Kazunori Matsuura
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Tottori 680-8552
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Affiliation(s)
- Yoshiko Miura
- Department of Chemical Engineering, Graduate
School of Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Yu Hoshino
- Department of Chemical Engineering, Graduate
School of Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Hirokazu Seto
- Department of Chemical Engineering, Graduate
School of Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
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Li X, Qin Z, Wu Y, Liu W, Li L, Guo L, Li Y, Yin L, Pu Y. Improvement of transfection efficiency by galactosylated N-3-guanidinopropyl methacrylamide-co-poly (ethylene glycol) methacrylate copolymers. Eur Polym J 2013. [DOI: 10.1016/j.eurpolymj.2013.06.034] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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8
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Maalouli N, Barras A, Siriwardena A, Bouazaoui M, Boukherroub R, Szunerits S. Comparison of photo- and Cu(i)-catalyzed “click” chemistries for the formation of carbohydrate SPR interfaces. Analyst 2013; 138:805-12. [DOI: 10.1039/c2an36272d] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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9
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Synthesis of protected sugar-amino acid hybrid molecules as platform for further derivatization. Tetrahedron Lett 2012. [DOI: 10.1016/j.tetlet.2012.10.042] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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10
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Enhanced binding of trigonal DNA–carbohydrate conjugates to lectin. Bioorg Med Chem Lett 2012; 22:6139-43. [DOI: 10.1016/j.bmcl.2012.08.028] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2012] [Revised: 07/26/2012] [Accepted: 08/07/2012] [Indexed: 11/16/2022]
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Harvey DJ. Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: an update for 2007-2008. MASS SPECTROMETRY REVIEWS 2012; 31:183-311. [PMID: 21850673 DOI: 10.1002/mas.20333] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2010] [Revised: 01/04/2011] [Accepted: 01/04/2011] [Indexed: 05/31/2023]
Abstract
This review is the fifth update of the original review, published in 1999, on the application of MALDI mass spectrometry to the analysis of carbohydrates and glycoconjugates and brings coverage of the literature to the end of 2008. The first section of the review covers fundamental studies, fragmentation of carbohydrate ions, use of derivatives and new software developments for analysis of carbohydrate spectra. Among newer areas of method development are glycan arrays, MALDI imaging and the use of ion mobility spectrometry. The second section of the review discusses applications of MALDI MS to the analysis of different types of carbohydrate. Specific compound classes that are covered include carbohydrate polymers from plants, N- and O-linked glycans from glycoproteins, biopharmaceuticals, glycated proteins, glycolipids, glycosides and various other natural products. There is a short section on the use of MALDI mass spectrometry for the study of enzymes involved in glycan processing and a section on the use of MALDI MS to monitor products of the chemical synthesis of carbohydrates with emphasis on carbohydrate-protein complexes and glycodendrimers. Corresponding analyses by electrospray ionization now appear to outnumber those performed by MALDI and the amount of literature makes a comprehensive review on this technique impractical. However, most of the work relating to sample preparation and glycan synthesis is equally relevant to electrospray and, consequently, those proposing analyses by electrospray should also find material in this review of interest.
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Affiliation(s)
- David J Harvey
- Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.
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Matsuura K, Fujino K, Teramoto T, Murasato K, Kimizuka N. Glutathione Nanosphere: Self-Assembly of Conformation-Regulated Trigonal-Glutathiones in Water. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2010. [DOI: 10.1246/bcsj.20100048] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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13
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Affiliation(s)
- Kazunori Matsuura
- Department of Chemistry and Biochemisry, Graduate School of Engineering, Kyushu University
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Cho CC, Liu JN, Chien CH, Shie JJ, Chen YC, Fang JM. Direct amidation of aldoses and decarboxylative amidation of alpha-keto acids: an efficient conjugation method for unprotected carbohydrate molecules. J Org Chem 2009; 74:1549-56. [PMID: 19159243 DOI: 10.1021/jo802338k] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
With use of iodine as an appropriate oxidant, unprotected and unmodified aldoses undergo oxidative amidation with a variety of functionalized amines, alpha-amino esters, and peptides, whereas KDO, sialic acid, and other alpha-keto acids proceed with oxidative decarboxylation followed by in situ amidation. Glycoside bond and many other functional groups are inert under such mild reaction conditions. This reaction protocol for direct ligation of carbohydrate molecules looks promising in the development of a general and efficient synthesis of glycoconjugates.
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Affiliation(s)
- Chia-Ching Cho
- Department of Chemistry, National Taiwan University, Taipei 106, Taiwan
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Matsuura K, Masumoto K, Igami Y, Kim K, Kimizuka N. CTAB-induced morphological transition of DNA micro-assembly from filled spheres to hollow capsules. MOLECULAR BIOSYSTEMS 2009; 5:921-3. [PMID: 19668854 DOI: 10.1039/b903382c] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
DNA microspheres formed by self-assembly of DNA three-way junctions with self-complementary sticky-ends undergo an unexpected dynamic transformation from filled spheres into hollow capsules upon addition of cationic surfactants such as cetyltrimethylammonium bromide.
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Affiliation(s)
- Kazunori Matsuura
- Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University, Moto-oka 744, Nishi-ku, Fukuoka, 819-0395, Japan.
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Colombeau L, Traoré T, Compain P, Martin OR. Metal-free one-pot oxidative amidation of aldoses with functionalized amines. J Org Chem 2008; 73:8647-50. [PMID: 18841916 DOI: 10.1021/jo801626v] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Metal-free one-pot oxidative amidation of aldoses with functionalized amines using iodine provides a rapid access to functionalized aldonamides. The main advantage of this approach relies on the fact that aldehyde oxidation and C-N bond formation are performed in a single synthetic operation.
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Affiliation(s)
- Ludovic Colombeau
- Institut de Chimie Organique et Analytique, Université d'Orléans, CNRS UMR 6005, BP 6759, 45067 Orléans, France
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Murasato K, Matsuura K, Kimizuka N. Self-assembly of nanofiber with uniform width from wheel-type trigonal-beta-sheet-forming peptide. Biomacromolecules 2008; 9:913-8. [PMID: 18288799 DOI: 10.1021/bm701302p] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A novel C3 symmetric peptide conjugate "Wheel-FKFE" consisting of three beta-sheet-forming peptides with wheel-like arrangement is developed, and the morphology of self-assembled peptide conjugates in aqueous solutions is observed at various pH. The CD spectra of Wheel-FKFE show the formation of beta-sheet structures in pH 6.9 phosphate buffer, whereas random structures are formed in aqueous HCl (pH 3.3) and NaOH (pH 11) solutions. In transmission electron microscopy, nanofibers with a uniform width of 3-4 nm and lengths of several micrometers are observed in pH 6.9 phosphate buffer, whereas nanorods with the width of several nanometers and the length of several tens of nanometers are observed for that of aqueous HCl (pH 3.3) and NaOH (pH 11) solutions. The uniform width (3-4 nm) of the fibers observed in neutral solution indicates formation of columnar self-assembly of Wheel-FKFEs. The fluorescence spectrum of polarity sensitive dye, sodium 8-anilino-1-naphthalenesulfonate (ANS), in the presence of Wheel-FKFE fibers revealed that the polarity inside the fibers corresponds to that of acetone, indicating that the internal space of the fibers possesses medium hydrophobic environment.
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Affiliation(s)
- Kazuya Murasato
- Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University, Moto-oka 744, Nishi-ku, Fukuoka 819-0395, Japan
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Röglin L, Seitz O. Controlling the activity of peptides and proteins with smart nucleic acid–protein hybrids. Org Biomol Chem 2008; 6:3881-7. [DOI: 10.1039/b807838f] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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Matsuura K, Masumoto K, Igami Y, Fujioka T, Kimizuka N. In Situ Observation of Spherical DNA Assembly in Water and the Controlled Release of Bound Dyes. Biomacromolecules 2007; 8:2726-32. [PMID: 17705427 DOI: 10.1021/bm070357w] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Three strands of 30-mer oligodeoxyribonucleotides (ODNs) were designed to form three-way junctions that possess self-complementary sticky ends. The morphology of self-assembled ODNs in water was observed in situ by confocal laser scanning fluorescence microscopy. The three-way junctions self-assembled into spherical assemblies, in accordance with transmission and scanning electron microscopy. The size of nucleospheres was in the range of several tens of nanometers to micrometers, which varied depending on the concentration of ODNs and added salts. Fluorescence images of spherical ODN assemblies suggested that the nucleospheres possess multiwalled structures. The fluorescence of sodium 1-anilinonaphthalene-8-sulfonate in the presence of nucleospheres revealed that the interior of nucleospheres possesses polarity corresponding to that between methanol and ethanol. A dye-inclusion experiment showed that cationic and even anionic dyes were adsorbed to the interior of the nucleospheres. The dye-included nucleospheres released dyes by thermal dissociation or digestion of the constituent ODNs.
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Affiliation(s)
- Kazunori Matsuura
- Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University, Moto-oka 744, Nishi-ku, Fukuoka 819-0395.
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