1
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He R, Liu B, Geng B, Li N, Geng Q. The role of HDAC3 and its inhibitors in regulation of oxidative stress and chronic diseases. Cell Death Discov 2023; 9:131. [PMID: 37072432 PMCID: PMC10113195 DOI: 10.1038/s41420-023-01399-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2022] [Revised: 03/01/2023] [Accepted: 03/06/2023] [Indexed: 04/20/2023] Open
Abstract
HDAC3 is a specific and crucial member of the HDAC family. It is required for embryonic growth, development, and physiological function. The regulation of oxidative stress is an important factor in intracellular homeostasis and signal transduction. Currently, HDAC3 has been found to regulate several oxidative stress-related processes and molecules dependent on its deacetylase and non-enzymatic activities. In this review, we comprehensively summarize the knowledge of the relationship of HDAC3 with mitochondria function and metabolism, ROS-produced enzymes, antioxidant enzymes, and oxidative stress-associated transcription factors. We also discuss the role of HDAC3 and its inhibitors in some chronic cardiovascular, kidney, and neurodegenerative diseases. Due to the simultaneous existence of enzyme activity and non-enzyme activity, HDAC3 and the development of its selective inhibitors still need further exploration in the future.
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Affiliation(s)
- Ruyuan He
- Department of Thoracic Surgery, Renmin Hospital of Wuhan University, Wuhan, China
| | - Bohao Liu
- Department of Thoracic Surgery, Renmin Hospital of Wuhan University, Wuhan, China
| | - Boxin Geng
- School of Basic Medicine, Army Medical University (Third Military Medical University), Chongqing, China
| | - Ning Li
- Department of Thoracic Surgery, Renmin Hospital of Wuhan University, Wuhan, China.
| | - Qing Geng
- Department of Thoracic Surgery, Renmin Hospital of Wuhan University, Wuhan, China.
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2
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Moinul M, Amin SA, Khatun S, Das S, Jha T, Gayen S. A detail survey and analysis of selectivity criteria for indole-based histone deacetylase 8 (HDAC8) inhibitors. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.133967] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
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3
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Scala MC, Di Micco S, Lanzillotta D, Musella S, Di Sarno V, Parrino B, Casciofierro SM, Bifulco G, Trapasso F, Campiglia P, Sala M. Overcome Chemoresistance: Biophysical and Structural Analysis of Synthetic FHIT-Derived Peptides. Front Mol Biosci 2021; 8:715263. [PMID: 34901149 PMCID: PMC8655160 DOI: 10.3389/fmolb.2021.715263] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Accepted: 10/07/2021] [Indexed: 11/24/2022] Open
Abstract
The fragile histidine triad (FHIT) protein is a member of the large and ubiquitous histidine triad (HIT) family of proteins. On the basis of genetic evidence, it has been postulated that the FHIT protein may function as tumor suppressor, implying a role for the FHIT protein in carcinogenesis. Recently, Gaudio et al. reported that FHIT binds and delocalizes annexin A4 (ANXA4) from plasma membrane to cytosol in paclitaxel-resistant lung cancer cells, thus restoring their chemosensitivity to the drug. They also identified the smallest protein sequence of the FHIT still interacting with ANXA4, ranging from position 7 to 13: QHLIKPS. This short sequence of FHIT protein was not only able to bind ANXA4 but also to hold its target in the cytosol during paclitaxel treatment, thus avoiding ANXA4 translocation to the inner side of the cell membrane. Starting from these results, to obtain much information about structure requirements involved in the interaction of the peptide mentioned above, we synthetized a panel of seven peptides through an Ala-scan approach. In detail, to study the binding of FHIT derived peptides with ANXA4, we applied a combination of different biophysical techniques such as differential scanning fluorimetry (DSF), surface plasmon resonance (SPR), and microscale thermophoresis (MST). Circular dichroism (CD) and nuclear magnetic resonance (NMR) were used to determine the conformational structure of the lead peptide (7–13) and peptides generated from ala-scan technique. The application of different biophysical and structural techniques, integrated by a preliminary biological evaluation, allowed us to build a solid structure activity relationship on the synthesized peptides.
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Affiliation(s)
| | - Simone Di Micco
- European Biomedical Research Institute of Salerno (EBRIS), Salerno, Italy
| | - Delia Lanzillotta
- Department of Experimental and Clinical Medicine, University Magna Græcia, Campus S. Venuta, Catanzaro, Italy
| | - Simona Musella
- European Biomedical Research Institute of Salerno (EBRIS), Salerno, Italy
| | | | - Barbara Parrino
- Department of Biological Chemical and Pharmaceutical Sciences and Technologies (STEBICEF), University of Palermo, Palermo, Italy
| | - Stella Maria Casciofierro
- Department of Biological Chemical and Pharmaceutical Sciences and Technologies (STEBICEF), University of Palermo, Palermo, Italy
| | | | - Francesco Trapasso
- Department of Experimental and Clinical Medicine, University Magna Græcia, Campus S. Venuta, Catanzaro, Italy
| | | | - Marina Sala
- Department of Pharmacy, University of Salerno, Fisciano, Italy
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4
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Muhajir MI, Hardianto A, Al‐Anshori J, Sumiarsa D, Mayanti T, Nurlelasari, Harneti D, Hidayat AT, Supratman U, Maharani R. Total Synthesis of Nocardiotide A by Using a Combination of Solid‐ and Solution‐Phase Methods. ChemistrySelect 2021. [DOI: 10.1002/slct.202103441] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Muhamad Imam Muhajir
- Department of Chemistry Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
| | - Ari Hardianto
- Department of Chemistry Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
| | - Jamaludin Al‐Anshori
- Department of Chemistry Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
- Study Center of Natural Products and Synthesis Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
| | - Dadan Sumiarsa
- Department of Chemistry Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
- Study Center of Natural Products and Synthesis Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
| | - Tri Mayanti
- Department of Chemistry Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
- Study Center of Natural Products and Synthesis Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
| | - Nurlelasari
- Department of Chemistry Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
- Study Center of Natural Products and Synthesis Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
| | - Desi Harneti
- Department of Chemistry Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
- Study Center of Natural Products and Synthesis Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
| | - Ace Tatang Hidayat
- Department of Chemistry Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
- Central Laboratory Universitas Padjadjaran Jatinangor West Java Indonesia
- Study Center of Natural Products and Synthesis Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
| | - Unang Supratman
- Department of Chemistry Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
- Central Laboratory Universitas Padjadjaran Jatinangor West Java Indonesia
- Study Center of Natural Products and Synthesis Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
| | - Rani Maharani
- Department of Chemistry Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
- Central Laboratory Universitas Padjadjaran Jatinangor West Java Indonesia
- Study Center of Natural Products and Synthesis Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Jatinangor West Java Indonesia
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5
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Kurnia DY, Maharani R, Hidayat AT, Al‐Anshori J, Wiani I, Mayanti T, Nurlelasari, Harneti D, Supratman U. Total synthesis of xylapeptide B [Cyclo‐(
L‐Leu‐L‐Pro‐
N‐
Me‐Phe‐L‐Val‐D‐Ala
)]. J Heterocycl Chem 2021. [DOI: 10.1002/jhet.4371] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Dessy Yulyani Kurnia
- Department of Chemistry, Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Sumedang Indonesia
| | - Rani Maharani
- Department of Chemistry, Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Sumedang Indonesia
- Laboratorium Sentral Universitas Padjadjaran Sumedang Indonesia
| | - Ace Tatang Hidayat
- Department of Chemistry, Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Sumedang Indonesia
- Laboratorium Sentral Universitas Padjadjaran Sumedang Indonesia
| | - Jamaludin Al‐Anshori
- Department of Chemistry, Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Sumedang Indonesia
| | - Ika Wiani
- Department of Chemistry, Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Sumedang Indonesia
| | - Tri Mayanti
- Department of Chemistry, Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Sumedang Indonesia
| | - Nurlelasari
- Department of Chemistry, Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Sumedang Indonesia
| | - Desi Harneti
- Department of Chemistry, Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Sumedang Indonesia
| | - Unang Supratman
- Department of Chemistry, Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Sumedang Indonesia
- Laboratorium Sentral Universitas Padjadjaran Sumedang Indonesia
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6
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Adhikari N, Jha T, Ghosh B. Dissecting Histone Deacetylase 3 in Multiple Disease Conditions: Selective Inhibition as a Promising Therapeutic Strategy. J Med Chem 2021; 64:8827-8869. [PMID: 34161101 DOI: 10.1021/acs.jmedchem.0c01676] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
The acetylation of histone and non-histone proteins has been implicated in several disease states. Modulation of such epigenetic modifications has therefore made histone deacetylases (HDACs) important drug targets. HDAC3, among various class I HDACs, has been signified as a potentially validated target in multiple diseases, namely, cancer, neurodegenerative diseases, diabetes, obesity, cardiovascular disorders, autoimmune diseases, inflammatory diseases, parasitic infections, and HIV. However, only a handful of HDAC3-selective inhibitors have been reported in spite of continuous efforts in design and development of HDAC3-selective inhibitors. In this Perspective, the roles of HDAC3 in various diseases as well as numerous potent and HDAC3-selective inhibitors have been discussed in detail. It will surely open up a new vista in the discovery of newer, more effective, and more selective HDAC3 inhibitors.
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Affiliation(s)
- Nilanjan Adhikari
- Natural Science Laboratory, Division of Medicinal and Pharmaceutical Chemistry, Department of Pharmaceutical Technology, Jadavpur University, P.O. Box 17020, Kolkata, 700032 West Bengal, India
| | - Tarun Jha
- Natural Science Laboratory, Division of Medicinal and Pharmaceutical Chemistry, Department of Pharmaceutical Technology, Jadavpur University, P.O. Box 17020, Kolkata, 700032 West Bengal, India
| | - Balaram Ghosh
- Epigenetic Research Laboratory, Department of Pharmacy, BITS-Pilani, Hyderabad Campus, Shamirpet, Hyderabad 500078, India
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7
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Corpas-López V, Tabraue-Chávez M, Sixto-López Y, Panadero-Fajardo S, Alves de Lima Franco F, Domínguez-Seglar JF, Morillas-Márquez F, Franco-Montalbán F, Díaz-Gavilán M, Correa-Basurto J, López-Viota J, López-Viota M, Pérez del Palacio J, de la Cruz M, de Pedro N, Martín-Sánchez J, Gómez-Vidal JA. O-Alkyl Hydroxamates Display Potent and Selective Antileishmanial Activity. J Med Chem 2020; 63:5734-5751. [DOI: 10.1021/acs.jmedchem.9b02016] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Victoriano Corpas-López
- Departamento de Parasitologı́a, Facultad de Farmacia, Universidad de Granada, Campus de Cartuja, 18071 Granada, Spain
| | - Mavys Tabraue-Chávez
- Departamento de Quı́mica Farmacéutica y Orgánica, Facultad de Farmacia, Universidad de Granada, Campus de Cartuja, 18071 Granada, Spain
| | - Yudibeth Sixto-López
- Laboratorio de Diseño y Desarrollo de Nuevos Fármacos y Productos Biotecnológicos, Sección de Estudios de Posgrado e Investigación, Escuela Superior de Medicina, Instituto Politécnico Nacional, Plan de San Luis y Díaz Mirón, 11340 México City, México
| | - Sonia Panadero-Fajardo
- Departamento de Quı́mica Farmacéutica y Orgánica, Facultad de Farmacia, Universidad de Granada, Campus de Cartuja, 18071 Granada, Spain
| | - Fernando Alves de Lima Franco
- Departamento de Parasitologı́a, Facultad de Farmacia, Universidad de Granada, Campus de Cartuja, 18071 Granada, Spain
| | - José F. Domínguez-Seglar
- Departamento de Quı́mica Farmacéutica y Orgánica, Facultad de Farmacia, Universidad de Granada, Campus de Cartuja, 18071 Granada, Spain
| | - Francisco Morillas-Márquez
- Departamento de Parasitologı́a, Facultad de Farmacia, Universidad de Granada, Campus de Cartuja, 18071 Granada, Spain
| | - Francisco Franco-Montalbán
- Departamento de Quı́mica Farmacéutica y Orgánica, Facultad de Farmacia, Universidad de Granada, Campus de Cartuja, 18071 Granada, Spain
| | - Mónica Díaz-Gavilán
- Departamento de Quı́mica Farmacéutica y Orgánica, Facultad de Farmacia, Universidad de Granada, Campus de Cartuja, 18071 Granada, Spain
| | - José Correa-Basurto
- Laboratorio de Diseño y Desarrollo de Nuevos Fármacos y Productos Biotecnológicos, Sección de Estudios de Posgrado e Investigación, Escuela Superior de Medicina, Instituto Politécnico Nacional, Plan de San Luis y Díaz Mirón, 11340 México City, México
| | - Julián López-Viota
- Departamento de Farmacia y Tecnologı́a Farmacéutica, Facultad de Farmacia, Universidad de Granada, Campus de Cartuja, 18071 Granada, Spain
| | - Margarita López-Viota
- Departamento de Farmacia y Tecnologı́a Farmacéutica, Facultad de Farmacia, Universidad de Granada, Campus de Cartuja, 18071 Granada, Spain
| | | | | | - Nuria de Pedro
- Fundación MEDINA, Parque Tecnológico de la Salud, 18016 Granada, Spain
| | - Joaquina Martín-Sánchez
- Departamento de Parasitologı́a, Facultad de Farmacia, Universidad de Granada, Campus de Cartuja, 18071 Granada, Spain
| | - José A. Gómez-Vidal
- Departamento de Quı́mica Farmacéutica y Orgánica, Facultad de Farmacia, Universidad de Granada, Campus de Cartuja, 18071 Granada, Spain
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8
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Napitupulu OI, Sumiarsa D, Subroto T, Nurlelasari, Harneti D, Supratman U, Maharani R. Synthesis of cyclo-PLAI using a combination of solid- and solution-phase methods. SYNTHETIC COMMUN 2019. [DOI: 10.1080/00397911.2018.1554148] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Orin Inggriani Napitupulu
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor, West Java, Indonesia
| | - Dadan Sumiarsa
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor, West Java, Indonesia
| | - Toto Subroto
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor, West Java, Indonesia
| | - Nurlelasari
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor, West Java, Indonesia
| | - Desi Harneti
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor, West Java, Indonesia
| | - Unang Supratman
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor, West Java, Indonesia
- Laboratorium Sentral, Universitas Padjadjaran, Jatinangor, West Java, Indonesia
| | - Rani Maharani
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor, West Java, Indonesia
- Laboratorium Sentral, Universitas Padjadjaran, Jatinangor, West Java, Indonesia
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9
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Histone deacetylase 8 (HDAC8) and its inhibitors with selectivity to other isoforms: An overview. Eur J Med Chem 2018; 164:214-240. [PMID: 30594678 DOI: 10.1016/j.ejmech.2018.12.039] [Citation(s) in RCA: 70] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2018] [Revised: 12/04/2018] [Accepted: 12/16/2018] [Indexed: 01/08/2023]
Abstract
The histone deacetylases (HDACs) enzymes provided crucial role in transcriptional regulation of cells through deacetylation of nuclear histone proteins. Discoveries related to the HDAC8 enzyme activity signified the importance of HDAC8 isoform in cell proliferation, tumorigenesis, cancer, neuronal disorders, parasitic/viral infections and other epigenetic regulations. The pan-HDAC inhibitors can confront these conditions but have chances to affect epigenetic functions of other HDAC isoforms. Designing of selective HDAC8 inhibitors is a key feature to combat the pathophysiological and diseased conditions involving the HDAC8 activity. This review is concerned about the structural and positional aspects of HDAC8 in the HDAC family. It also covers the contributions of HDAC8 in the pathophysiological conditions, a preliminary discussion about the recent scenario of HDAC8 inhibitors. This review might help to deliver the structural, functional and computational information in order to identify and design potent and selective HDAC8 inhibitors for target specific treatment of diseases involving HDAC8 enzymatic activity.
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10
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Sangwan R, Rajan R, Mandal PK. HDAC as onco target: Reviewing the synthetic approaches with SAR study of their inhibitors. Eur J Med Chem 2018; 158:620-706. [DOI: 10.1016/j.ejmech.2018.08.073] [Citation(s) in RCA: 53] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2017] [Revised: 01/09/2018] [Accepted: 08/26/2018] [Indexed: 02/06/2023]
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11
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Adhikari N, Amin SA, Trivedi P, Jha T, Ghosh B. HDAC3 is a potential validated target for cancer: An overview on the benzamide-based selective HDAC3 inhibitors through comparative SAR/QSAR/QAAR approaches. Eur J Med Chem 2018; 157:1127-1142. [DOI: 10.1016/j.ejmech.2018.08.081] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2018] [Revised: 08/08/2018] [Accepted: 08/27/2018] [Indexed: 02/06/2023]
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12
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Identification by Inverse Virtual Screening of magnolol-based scaffold as new tankyrase-2 inhibitors. Bioorg Med Chem 2018; 26:3953-3957. [DOI: 10.1016/j.bmc.2018.06.019] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2018] [Revised: 06/12/2018] [Accepted: 06/13/2018] [Indexed: 12/27/2022]
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13
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Giordano A, del Gaudio F, Johansson C, Riccio R, Oppermann U, Di Micco S. Virtual Fragment Screening Identification of a Quinoline-5,8-dicarboxylic Acid Derivative as a Selective JMJD3 Inhibitor. ChemMedChem 2018; 13:1160-1164. [PMID: 29633584 PMCID: PMC6055880 DOI: 10.1002/cmdc.201800198] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2018] [Indexed: 11/08/2022]
Abstract
The quinoline-5,8 dicarboxylic acid scaffold has been identified by a fragment-based approach as new potential lead compound for the development of JMJD3 inhibitors. Among them, 3-(2,4-dimethoxypyrimidin-5-yl)quinoline-5,8-dicarboxylic acid (compound 3) shows low micromolar inhibitory activity against Jumonji domain-containing protein 3 (JMJD3). The experimental evaluation of inhibitory activity against seven related isoforms of JMJD3 highlighted an unprecedented selectivity toward the biological target of interest.
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Affiliation(s)
- Assunta Giordano
- Institute of Biomolecular Chemistry (ICB)Consiglio Nazionale delle Ricerche (CNR)Via Campi Flegrei 3480078Pozzuoli (Napoli)Italy
- Department of PharmacyUniversity of SalernoVia Giovanni Paolo II, 13284084Fisciano (Salerno)Italy
| | - Federica del Gaudio
- Department of PharmacyUniversity of SalernoVia Giovanni Paolo II, 13284084Fisciano (Salerno)Italy
- PhD Program in Drug Discovery and DevelopmentUniversity of SalernoVia Giovanni Paolo II, 13284084Fisciano (Salerno)Italy
- Farmaceutici Damor S.p.AVia E. Scaglione 2780145NaplesItaly
| | - Catrine Johansson
- Botnar Research Centre, Oxford NIHR BRUOxford University, Oxford Centre for Translational Myeloma ResearchOxfordOX3 7LDUK
| | - Raffaele Riccio
- Department of PharmacyUniversity of SalernoVia Giovanni Paolo II, 13284084Fisciano (Salerno)Italy
| | - Udo Oppermann
- Botnar Research Centre, Oxford NIHR BRUOxford University, Oxford Centre for Translational Myeloma ResearchOxfordOX3 7LDUK
- Freiburg Institute for Advanced Studies (FRIAS)University of FreiburgAlbertstraße 1979104FreiburgGermany
| | - Simone Di Micco
- Department of PharmacyUniversity of SalernoVia Giovanni Paolo II, 13284084Fisciano (Salerno)Italy
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14
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Structure–activity relationships of hydroxamate-based histone deacetylase-8 inhibitors: reality behind anticancer drug discovery. Future Med Chem 2017; 9:2211-2237. [PMID: 29182018 DOI: 10.4155/fmc-2017-0130] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
The pan-histone deacetylase (HDAC) inhibitors comprise a fish-like structural orientation where hydrophobic aryl- and zinc-binding groups act as head and tail, respectively of a fish. The linker moiety correlates the body of the fish linking head and tail groups. Despite these pan-HDAC inhibitors, selective HDAC-8 inhibitors are still in demand as a safe remedy. HDAC-8 is involved in invasion and metastasis in cancer. This review deals with the rationale behind HDAC-8 inhibitory activity and selectivity along with detailed structure–activity relationships of diverse hydroxamate-based HDAC-8 inhibitors. HDAC-8 inhibitory potency may be increased by modifying the fish-like pharmacophoric features of such type of pan-HDAC inhibitors. This review may provide a preliminary basis to design and optimize new lead molecules with higher HDAC-8 inhibitory activity. This work may surely enlighten in providing useful information in the field of target-specific anticancer therapy.
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15
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Lactoferrin-derived Peptides Active towards Influenza: Identification of Three Potent Tetrapeptide Inhibitors. Sci Rep 2017; 7:10593. [PMID: 28878220 PMCID: PMC5587682 DOI: 10.1038/s41598-017-10492-x] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2017] [Accepted: 08/09/2017] [Indexed: 11/08/2022] Open
Abstract
Bovine lactoferrin is a biglobular multifunctional iron binding glycoprotein that plays an important role in innate immunity against infections. We have previously demonstrated that selected peptides from bovine lactoferrin C-lobe are able to prevent both Influenza virus hemagglutination and cell infection. To deeper investigate the ability of lactoferrin derived peptides to inhibit Influenza virus infection, in this study we identified new bovine lactoferrin C-lobe derived sequences and corresponding synthetic peptides were synthesized and assayed to check their ability to prevent viral hemagglutination and infection. We identified three tetrapeptides endowed with broad anti-Influenza activity and able to inhibit viral infection in a concentration range femto- to picomolar. Our data indicate that these peptides may constitute a non-toxic tool for potential applications as anti-Influenza therapeutics.
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16
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Roche J, Bertrand P. Inside HDACs with more selective HDAC inhibitors. Eur J Med Chem 2016; 121:451-483. [PMID: 27318122 DOI: 10.1016/j.ejmech.2016.05.047] [Citation(s) in RCA: 234] [Impact Index Per Article: 29.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2016] [Revised: 05/20/2016] [Accepted: 05/21/2016] [Indexed: 01/08/2023]
Abstract
Inhibitors of histone deacetylases (HDACs) are nowadays part of the therapeutic arsenal mainly against cancers, with four compounds approved by the Food and Drug Administration. During the last five years, several groups have made continuous efforts to improve this class of compounds, designing more selective compounds or compounds with multiple capacities. After a survey of the HDAC biology and structures, this review summarizes the results of the chemists working in this field, and highlights when possible the behavior of the molecules inside their targets.
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Affiliation(s)
- Joëlle Roche
- Laboratoire Ecologie et Biologie des Interactions, Equipe « SEVE Sucres & Echanges Végétaux-Environnement », Université de Poitiers, UMR CNRS 7267, F-86073 Poitiers Cedex 09, France; Réseau Epigénétique du Cancéropôle Grand Ouest, France
| | - Philippe Bertrand
- Institut de Chimie des Milieux et Matériaux de Poitiers, UMR CNRS 7285, 4 rue Michel Brunet, TSA 51106, B28, F-86073 Poitiers Cedex 09, France; Réseau Epigénétique du Cancéropôle Grand Ouest, France.
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17
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Noor Z, Afzal N, Rashid S. Exploration of Novel Inhibitors for Class I Histone Deacetylase Isoforms by QSAR Modeling and Molecular Dynamics Simulation Assays. PLoS One 2015; 10:e0139588. [PMID: 26431201 PMCID: PMC4592208 DOI: 10.1371/journal.pone.0139588] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2015] [Accepted: 09/15/2015] [Indexed: 12/20/2022] Open
Abstract
Histone deacetylases (HDAC) are metal-dependent enzymes and considered as important targets for cell functioning. Particularly, higher expression of class I HDACs is common in the onset of multiple malignancies which results in deregulation of many target genes involved in cell growth, differentiation and survival. Although substantial attempts have been made to control the irregular functioning of HDACs by employing various inhibitors with high sensitivity towards transformed cells, limited success has been achieved in epigenetic cancer therapy. Here in this study, we used ligand-based pharmacophore and 2-dimensional quantitative structure activity relationship (QSAR) modeling approaches for targeting class I HDAC isoforms. Pharmacophore models were generated by taking into account the known IC50 values and experimental energy scores with extensive validations. The QSAR model having an external R2 value of 0.93 was employed for virtual screening of compound libraries. 10 potential lead compounds (C1-C10) were short-listed having strong binding affinities for HDACs, out of which 2 compounds (C8 and C9) were able to interact with all members of class I HDACs. The potential binding modes of HDAC2 and HDAC8 to C8 were explored through molecular dynamics simulations. Overall, bioactivity and ligand efficiency (binding energy/non-hydrogen atoms) profiles suggested that proposed hits may be more effective inhibitors for cancer therapy.
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Affiliation(s)
- Zainab Noor
- National Center for Bioinformatics, Quaid I Azam University, Islamabad, Pakistan
| | - Noreen Afzal
- National Center for Bioinformatics, Quaid I Azam University, Islamabad, Pakistan
| | - Sajid Rashid
- National Center for Bioinformatics, Quaid I Azam University, Islamabad, Pakistan
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Jędrzejczak K, Hrynczyszyn P, Artym J, Kocięba M, Zimecki M, Zabrocki J, Jankowski S. Synthesis and biological activity of cyclolinopeptide A analogues modified with γ(3)-bis(homophenylalanine). Eur J Med Chem 2014; 86:515-27. [PMID: 25203781 DOI: 10.1016/j.ejmech.2014.09.014] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2014] [Revised: 09/01/2014] [Accepted: 09/04/2014] [Indexed: 01/01/2023]
Abstract
Cyclolinopeptide A, naturally occurring immunomodulatory nonapeptide, was modified with S or R-γ(3)-bis(homophenylalanine) in positions 3 or 4, or both 3 and 4. The replacement of one or both Phe residues by γ(3)-hhPhe led to decrease of their conformational flexibility in the analogues in comparison to CLA. All cyclic peptides, except 11, exist as isomers with the cis Pro-Pro peptide bond. Cyclic peptide 11 with single modification S-γ(3)-hhPhe(4) exists as a mixture of two isomers and the major isomer (89%) contains all peptide bonds of the trans geometry. The peptides were subjected to several immunological tests in vitro and in vivo. Linear peptides 1-8, precursors of CLA analogues 9-16, were not toxic against human peripheral blood mononuclear cells (PBMC) but cyclic analogues showed dose-dependent toxicity with exception of peptide 11. Linear peptides did not inhibit mitogen-induced PBMC proliferation whereas cyclic ones inhibited the proliferation in a dose-dependent manner. The actions of linear and cyclic peptides with regard to lipopolysaccharide (LPS) -induced tumour necrosis factor alpha (TNF α) production in whole human blood cultures were differential but particularly suppressive in the case of linear compound 6. Therefore, for in vivo tests compounds 6 and 11 were selected. The compounds showed comparable, suppressive actions in induction and effector phases of delayed type hypersensitivity as well as in the carrageenan-induced foot pad edema in mouse models. In summary, linear peptide 6 and cyclic peptide 11 are attractive as potential immune suppressor drugs.
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Affiliation(s)
- Karol Jędrzejczak
- Institute of Organic Chemistry, Faculty of Chemistry, Technical University of Łódź, Żeromskiego 116, 90-924, Poland
| | - Paweł Hrynczyszyn
- Institute of Organic Chemistry, Faculty of Chemistry, Technical University of Łódź, Żeromskiego 116, 90-924, Poland
| | - Jolanta Artym
- Institute of Immunology and Experimental Therapy, Polish Academy of Science, R. Weigla 12, 53-114 Wroclaw, Poland
| | - Maja Kocięba
- Institute of Immunology and Experimental Therapy, Polish Academy of Science, R. Weigla 12, 53-114 Wroclaw, Poland
| | - Michał Zimecki
- Institute of Immunology and Experimental Therapy, Polish Academy of Science, R. Weigla 12, 53-114 Wroclaw, Poland
| | - Janusz Zabrocki
- Institute of Organic Chemistry, Faculty of Chemistry, Technical University of Łódź, Żeromskiego 116, 90-924, Poland; Peptaderm Ltd., Rydygiera 8, 01-793 Warsaw, Poland
| | - Stefan Jankowski
- Institute of Organic Chemistry, Faculty of Chemistry, Technical University of Łódź, Żeromskiego 116, 90-924, Poland.
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Di Micco S, Chini MG, Terracciano S, Bruno I, Riccio R, Bifulco G. Structural basis for the design and synthesis of selective HDAC inhibitors. Bioorg Med Chem 2013; 21:3795-807. [DOI: 10.1016/j.bmc.2013.04.036] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2013] [Revised: 04/09/2013] [Accepted: 04/10/2013] [Indexed: 10/26/2022]
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20
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Traoré M, Mietton F, Maubon D, Peuchmaur M, Francisco Hilário F, Pereira de Freitas R, Bougdour A, Curt A, Maynadier M, Vial H, Pelloux H, Hakimi MA, Wong YS. Flexible Synthesis and Evaluation of Diverse Anti-Apicomplexa Cyclic Peptides. J Org Chem 2013; 78:3655-75. [DOI: 10.1021/jo4001492] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Mariam Traoré
- Département de Pharmacochimie Moléculaire, Université Joseph Fourier-Grenoble 1, CNRS UMR 5063, CNRS ICMG FR 2607, bâtiment André
Rassat, 470 rue de la Chimie, F-38041 Grenoble Cedex 9, France
| | - Flore Mietton
- Laboratoire Adaptation et Pathogénie des Micro-organismes, Université Joseph Fourier-Grenoble 1, CNRS UMR 5163, BP 170, F-38042 Grenoble Cedex 9, France
| | - Danièle Maubon
- Laboratoire Adaptation et Pathogénie des Micro-organismes, Université Joseph Fourier-Grenoble 1, CNRS UMR 5163, BP 170, F-38042 Grenoble Cedex 9, France
- Laboratoire de Parasitologie-Mycologie, Département des Agents Infectieux, Centre Hospitalier Universitaire, BP
217, 38043 Grenoble cedex 9, France
| | - Marine Peuchmaur
- Département de Pharmacochimie Moléculaire, Université Joseph Fourier-Grenoble 1, CNRS UMR 5063, CNRS ICMG FR 2607, bâtiment André
Rassat, 470 rue de la Chimie, F-38041 Grenoble Cedex 9, France
| | - Flaviane Francisco Hilário
- Département de Pharmacochimie Moléculaire, Université Joseph Fourier-Grenoble 1, CNRS UMR 5063, CNRS ICMG FR 2607, bâtiment André
Rassat, 470 rue de la Chimie, F-38041 Grenoble Cedex 9, France
- Departamento de Quı́mica, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais,
Brasil
- CAPES Foundation, Ministry of Education of Brazil, Brasilia DF 70040-020, Brazil
| | | | - Alexandre Bougdour
- Laboratoire Adaptation et Pathogénie des Micro-organismes, Université Joseph Fourier-Grenoble 1, CNRS UMR 5163, BP 170, F-38042 Grenoble Cedex 9, France
| | - Aurélie Curt
- Laboratoire Adaptation et Pathogénie des Micro-organismes, Université Joseph Fourier-Grenoble 1, CNRS UMR 5163, BP 170, F-38042 Grenoble Cedex 9, France
- Laboratoire de Parasitologie-Mycologie, Département des Agents Infectieux, Centre Hospitalier Universitaire, BP
217, 38043 Grenoble cedex 9, France
| | - Marjorie Maynadier
- Dynamique
des Interactions Membranaires Normales et Pathologiques, Université de Montpellier 2,
CNRS UMR 5235, CP 107, Place E. Bataillon, F-34095 Montpellier Cedex
5, France
| | - Henri Vial
- Dynamique
des Interactions Membranaires Normales et Pathologiques, Université de Montpellier 2,
CNRS UMR 5235, CP 107, Place E. Bataillon, F-34095 Montpellier Cedex
5, France
| | - Hervé Pelloux
- Laboratoire Adaptation et Pathogénie des Micro-organismes, Université Joseph Fourier-Grenoble 1, CNRS UMR 5163, BP 170, F-38042 Grenoble Cedex 9, France
- Laboratoire de Parasitologie-Mycologie, Département des Agents Infectieux, Centre Hospitalier Universitaire, BP
217, 38043 Grenoble cedex 9, France
| | - Mohamed-Ali Hakimi
- Laboratoire Adaptation et Pathogénie des Micro-organismes, Université Joseph Fourier-Grenoble 1, CNRS UMR 5163, BP 170, F-38042 Grenoble Cedex 9, France
| | - Yung-Sing Wong
- Département de Pharmacochimie Moléculaire, Université Joseph Fourier-Grenoble 1, CNRS UMR 5063, CNRS ICMG FR 2607, bâtiment André
Rassat, 470 rue de la Chimie, F-38041 Grenoble Cedex 9, France
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21
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Herndon JW. The chemistry of the carbon–transition metal double and triple bond: Annual survey covering the year 2010. Coord Chem Rev 2012. [DOI: 10.1016/j.ccr.2012.02.015] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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22
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AS1387392, a novel immunosuppressive cyclic tetrapeptide compound with inhibitory activity against mammalian histone deacetylase. J Antibiot (Tokyo) 2012. [DOI: 10.1038/ja.2012.13] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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