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Dawbaa S, Türkeş C, Nuha D, Demir Y, Evren AE, Yurttaş L, Beydemir Ş. New N-(1,3,4-thiadiazole-2-yl)acetamide derivatives as human carbonic anhydrase I and II and acetylcholinesterase inhibitors. J Biomol Struct Dyn 2024:1-19. [PMID: 38533902 DOI: 10.1080/07391102.2024.2331085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Accepted: 03/11/2024] [Indexed: 03/28/2024]
Abstract
Various carbonic anhydrase (CA) enzyme isoforms are known today. In addition to the use of CA inhibitors as diuretics, antiepileptics and antiglaucoma agents, the inhibition of other specific isoforms of CA was reported to have clinical benefits in cancers. In this study, two groups of 1,3,4-thiadiazole derivatives were designed and synthesized to act as human CA I and II (hCA I and hCA II) inhibitors. The activities of these compounds were tested in vitro and evaluated in silico studies. The activity of the synthesized compounds was also tested against acetylcholinesterase (AChE) to evaluate the relation of the newly designed structures to the activity against AChE. The synthesized compounds were analyzed by 1H NMR,13C NMR and high-resolution mass spectroscopy (HRMS). The results displayed a better activity of all the synthesized compounds against hCA I than that of the commonly used standard drug, Acetazolamide (AAZ). The compounds also showed better activity against hCA II, except for compounds 5b and 6b. Only compounds 6a and 6c showed superior activity against AChE compared to the standard agent, tacrine (THA). In silico studies, including absorption, distribution, metabolism and excretion (ADME) and drug-likeness evaluation, molecular docking, molecular dynamic simulations (MDSs) and density functional theory (DFT) calculations, were compatible with the in vitro results and presented details regarding the structure-activity relationship.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Sam Dawbaa
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Anadolu University, Eskişehir, Turkey
- Department of Doctor of Pharmacy (PharmD), Faculty of Medical Sciences, Thamar University, Dhamar, Yemen
- Department of Pharmacy, Faculty of Medical Sciences, Al-Hikma University, Dhamar, Yemen
| | - Cüneyt Türkeş
- Department of Biochemistry, Faculty of Pharmacy, Erzincan Binali Yıldırım University, Erzincan, Turkey
| | - Demokrat Nuha
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Anadolu University, Eskişehir, Turkey
- Department of Chemistry, Faculty of Science, Eskisehir Technical University, Eskişehir, Turkey
- Faculty of Pharmacy, University for Business and Technology, Prishtina, Kosovo
| | - Yeliz Demir
- Department of Pharmacy Services, Nihat Delibalta Göle Vocational High School, Ardahan University, Ardahan, Turkey
| | - Asaf Evrim Evren
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Anadolu University, Eskişehir, Turkey
- Department of Pharmacy Services, Vocational School of Health Services, Bilecik Şeyh Edebali University, Bilecik, Turkey
| | - Leyla Yurttaş
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Anadolu University, Eskişehir, Turkey
| | - Şükrü Beydemir
- Department of Biochemistry, Faculty of Pharmacy, Anadolu University, Eskişehir, Turkey
- The Rectorate of Bilecik Seyh Edebali University, Bilecik, Turkey
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2
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Nuha D, Evren AE, Kapusiz Ö, Gül ÜD, Gundogdu-Karaburun N, Karaburun AÇ, Berber H. Design, synthesis, and antimicrobial activity of novel coumarin derivatives: An in-silico and in-vitro study. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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3
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Nuha D, Evren AE, Çiyanci ZŞ, Temel HE, Akalin Çiftçi G, Yurttaş L. Synthesis, density functional theory calculation, molecular docking studies, and evaluation of novel 5-nitrothiophene derivatives for anticancer activity. Arch Pharm (Weinheim) 2022; 355:e2200105. [PMID: 35584987 DOI: 10.1002/ardp.202200105] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 04/19/2022] [Accepted: 04/21/2022] [Indexed: 12/29/2022]
Abstract
Within the scope of this study, new 2-{2-[(5-nitrothiophen-2-yl)methylene]hydrazinyl}thiazole derivatives (2a-j) were synthesized and investigated for their potential anticancer and enzyme inhibition activities. Spectroscopic techniques were used to determine the structures of substances. The anticancer activities of compounds were detected in A549 human lung carcinoma and L929 murine fibroblast cell lines, determining cytotoxicity, apoptosis, mitochondrial membrane integrity, and caspase-3 activation. Compounds 2b bearing 4-nitrophenyl, 2c bearing phenyl, and 2d bearing 4-cyanophenyl moieties were specified with high anticancer activity, acting through an apoptotic pathway with an apoptosis ratio of 9.61%-15.59%. Mitochondrial membrane depolarization was determined to be 25.53% and 22.33% for compounds 2b and 2c, respectively. Furthermore, compound 2c exhibited excellent caspase-3 activation. A molecular docking study was realized with compound 2c on the caspase-3 enzyme. Furthermore, the electronic characteristics of the active compounds were investigated using density functional theory (DFT) at the B3LYP/6-31G (d, p) level. The frontier molecular orbital energy and atomic net charges were examined.
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Affiliation(s)
- Demokrat Nuha
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Anadolu University, Eskişehir, Turkey.,Department of Chemistry, Faculty of Science, Eskisehir Technical University, Eskişehir, Turkey.,Faculty of Pharmacy, University of Business and Technology, Prishtina, Kosovo
| | - Asaf E Evren
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Anadolu University, Eskişehir, Turkey.,Department of Pharmacy Services, Vocational School of Health Services, Bilecik Seyh Edebali University, Bilecik, Turkey
| | - Zennure Ş Çiyanci
- Department of Biochemistry, Faculty of Pharmacy, Anadolu University, Eskişehir, Turkey
| | - Halide E Temel
- Department of Biochemistry, Faculty of Pharmacy, Anadolu University, Eskişehir, Turkey
| | - Gülşen Akalin Çiftçi
- Department of Biochemistry, Faculty of Pharmacy, Anadolu University, Eskişehir, Turkey
| | - Leyla Yurttaş
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Anadolu University, Eskişehir, Turkey
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4
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Saigal, Khizr M, Sahoo SC, Khan MM. Synthesis, characterization, X-ray crystallographic study and in silico ADME predictions of functionalized nitropyrrole derivatives. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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5
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Evren AE, Nuha D, Dawbaa S, Sağlık BN, Yurttaş L. Synthesis of novel thiazolyl hydrazone derivatives as potent dual monoamine oxidase-aromatase inhibitors. Eur J Med Chem 2022; 229:114097. [PMID: 34998057 DOI: 10.1016/j.ejmech.2021.114097] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2021] [Revised: 12/20/2021] [Accepted: 12/29/2021] [Indexed: 12/18/2022]
Abstract
The inhibitory effects of 2-thiazolyl hydrazones on monoamine oxidase enzymes are known for a long time. In this study, a new series of 2-thiazolyl hydrazone derivatives were synthesized starting from 6-methoxy-2-naphthaldehyde. All of the synthesized compounds were investigated in terms of their monoamine oxidase (MAO) inhibitory effects and significant results were found. The results showed that compound 2j potently inhibited MAO-A and MAO-B, while compound 2t strongly and selectively inhibited MAO-B compared to standard drugs. Compounds 2k and 2q exhibited selective and satisfying inhibition on MAO-B. In the aromatase inhibition studies of the compounds, it was determined that compounds 2q and 2u had high inhibitory properties. Molecular docking studies on MAO-A, MAO-B, and aromatase enzymes were carried out for the aforementioned compounds. Additionally, molecular dynamics simulation was studied for compound 2q on MAO-B and aromatase complexes. Finally, the Field-based QSAR study was developed and the structure-activity relationship (SAR) was explained. For the first time, dual inhibitors on MAO and aromatase enzyme were investigated together. The aim of this approach is for finding the potential agents that do not cause the cognitive disorders and may even treat neurodegenerative symptoms, thus, the aim was reached successfully.
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Affiliation(s)
- Asaf Evrim Evren
- Anadolu University, Faculty of Pharmacy, Department of Pharmaceutical Chemistry, 26470, Eskişehir, Turkey; Bilecik Şeyh Edebali University, Vocational School of Health Services, Department of Pharmacy Services, 11000, Bilecik, Turkey.
| | - Demokrat Nuha
- Anadolu University, Faculty of Pharmacy, Department of Pharmaceutical Chemistry, 26470, Eskişehir, Turkey; Eskisehir Technical University, Faculty of Science, Department of Chemistry, 26555, Eskişehir, Turkey
| | - Sam Dawbaa
- Anadolu University, Faculty of Pharmacy, Department of Pharmaceutical Chemistry, 26470, Eskişehir, Turkey; Department of Pharmacy, Faculty of Medicine and Health Sciences, Thamar University, Dhamar, Yemen
| | - Begüm Nurpelin Sağlık
- Anadolu University, Faculty of Pharmacy, Department of Pharmaceutical Chemistry, 26470, Eskişehir, Turkey
| | - Leyla Yurttaş
- Anadolu University, Faculty of Pharmacy, Department of Pharmaceutical Chemistry, 26470, Eskişehir, Turkey
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6
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Eissa SI, Farrag AM, Abbas SY, El Shehry MF, Ragab A, Fayed EA, Ammar YA. Novel structural hybrids of quinoline and thiazole moieties: Synthesis and evaluation of antibacterial and antifungal activities with molecular modeling studies. Bioorg Chem 2021; 110:104803. [PMID: 33761314 DOI: 10.1016/j.bioorg.2021.104803] [Citation(s) in RCA: 45] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Revised: 09/20/2020] [Accepted: 03/02/2021] [Indexed: 11/25/2022]
Abstract
One of the best ways to design new biocidal agents is synthesizing hybrid molecules by combining two or more bioactive moieties in a single molecular scaffold. So, new series of quinolines bearing a thiazole moiety were synthesized using thiosemicarbazones 2a-f. Cyclization of 2a-f with ethyl chloroacetate, ethyl 2-chloropropanoate or chloroacetone afforded the corresponding thiazoles 3-5. The antimicrobial activity of the new quinoline derivatives was evaluated. The most of tested compounds revealed potent both of the antibacterial and antifungal activities. Fourfold potency of amphotericin B for the inhibition the growth of the A. fumigatus was displayed by ccompound 5e. The latter compound displayed twofold potency of gentamycin for inhibition the growth of N. gonorrhoeae. Moreover, this compound showed equipotent potency of references drugs for inhibition of the growth of S. flexneri, S. pyogenes, P. vulgaris, A. clavatus, G. candidum and P. marneffei. So, quinolines bearing a thiazole moiety can be suggested as interesting scaffolds for the development both of the novel antibacterial and antifungal agents. Some new derivatives were studied as peptide deformylase enzyme inhibitors. Thiazolidin-4-one derivative 3d and 2,3-dihydrothiazole derivative 5c had shown good PDF inhibition activity, which had been supported by the docking results with highest binding affinity and lowest docking energy score. These results suggested that the most potent compounds might be possible agents as novel bacterial PDF inhibitor.
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Affiliation(s)
- Sally I Eissa
- Pharmaceutical Chemistry Department, Faculty of Pharmacy (Girls), Al-Azhar University, Cairo, Egypt; Department of Pharmaceutical Sciences, College of Pharmacy, AlMaarefa University, Dariyah, Riyadh, 13713, Saudi Arabia
| | - Amel M Farrag
- Pharmaceutical Chemistry Department, Faculty of Pharmacy (Girls), Al-Azhar University, Cairo, Egypt
| | - Samir Y Abbas
- Organometallic and Organometalloid Chemistry Department, National Research Centre, Cairo, Egypt.
| | | | - Ahmed Ragab
- Chemistry Department, Faculty of Science (Boys), Al-Azhar University, Cairo, Egypt
| | - Eman A Fayed
- Pharmaceutical Organic Chemistry Department, Faculty of Pharmacy (Girls), Al-Azhar University, Egypt
| | - Yousry A Ammar
- Chemistry Department, Faculty of Science (Boys), Al-Azhar University, Cairo, Egypt.
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7
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Khan FAK, Kaduskar RN, Patil R, Patil RH, Ansari SA, Alkahtani HM, Almehizia AA, Shinde DB, Sangshetti JN. Synthesis, biological evaluations and computational studies of N-(3-(-2-(7-Chloroquinolin-2-yl)vinyl) benzylidene)anilines as fungal biofilm inhibitors. Bioorg Med Chem Lett 2018; 29:623-630. [PMID: 30595445 DOI: 10.1016/j.bmcl.2018.12.046] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2018] [Revised: 12/17/2018] [Accepted: 12/20/2018] [Indexed: 02/07/2023]
Abstract
In the present investigation, new chloroquinoline derivatives bearing vinyl benzylidene aniline substituents at 2nd position were synthesized and screed for biofilm inhibitory, antifungal and antibacterial activity. The result of biofilm inhibition of C. albicans suggested that compounds 5j (IC50 value = 51.2 μM) and 5a (IC50 value = 66.2 μM) possess promising antibiofilm inhibition when compared with the standard antifungal drug fluconazole (IC50 = 40.0 μM). Two compounds 5a (MIC = 94.2 μg/mL) and 5f (MIC = 98.8 μg/mL) also exhibited good antifungal activity comparable to standard drug fluconazole (MIC = 50.0 μg/mL). The antibacterial screening against four strains of bacteria viz. E. coli, P. aeruginosa, B. subtilis, and S. aureus suggested their potential antibacterial activity and especially all the compounds except 5g were found more active than the standard drug ciprofloxacin against B. subtilis. To further gain insights into the possible mechanism of these compounds in biofilm inhibition through the agglutinin like protein (Als), molecular docking and molecular dynamics simulation studies were carried out. Molecular modeling studies suggested the clear role in inhibition of this protein and the resulting biofilm inhibitory activity.
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Affiliation(s)
- Firoz A Kalam Khan
- Anjuman-I-Islam's Kalsekar Technical Campus, School of Pharmacy, Navi Mumbai 410206, M.S., India
| | - Rashmi N Kaduskar
- Y.B. Chavan College of Pharmacy, Dr. Rafiq Zakaria Campus, Aurangabad 431 001, M.S., India
| | - Rajesh Patil
- Sinhgad Technical Education Society's, Smt. Kashibai Navale College of Pharmacy, Kondhwa (Bk), Pune, India.
| | - Rajendra H Patil
- Department of Biotechnology, Savitribai Phule Pune University, Pune 411007, M.S., India
| | - Siddique Akber Ansari
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Po Box 2454, Riyadh 11451, Saudi Arabia
| | - Hamad M Alkahtani
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Po Box 2454, Riyadh 11451, Saudi Arabia
| | - Abdulrahman A Almehizia
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Po Box 2454, Riyadh 11451, Saudi Arabia
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8
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Žalubovskis R, Winum JY. Inhibitors of Selected Bacterial Metalloenzymes. Curr Med Chem 2018; 26:2690-2714. [PMID: 29611472 DOI: 10.2174/0929867325666180403154018] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2017] [Revised: 03/14/2018] [Accepted: 03/19/2018] [Indexed: 12/26/2022]
Abstract
The utilization of bacterial metalloenzymes, especially ones not having mammalian (human) counterparts, has drawn attention to develop novel antibacterial agents to overcome drug resistance and especially multidrug resistance. In this review, we focus on the recent achievements on the development of inhibitors of bacterial enzymes peptide deformylase (PDF), metallo-β-lactamase (MBL), methionine aminopeptidase (MetAP) and UDP-3-O-acyl- N-acetylglucosamine deacetylase (LpxC). The state of the art of the design and investigation of inhibitors of bacterial metalloenzymes is presented, and challenges are outlined and discussed.
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Affiliation(s)
- Raivis Žalubovskis
- Latvian Institute of Organic Synthesis, Riga, Latvia.,Institute of Technology of Organic Chemistry, Faculty of Materials Science and Applied Chemistry, Riga Technical University, Latvia
| | - Jean-Yves Winum
- Institut des Biomolecules Max Mousseron, Universite de Montpellier, France
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9
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Patil RH, Kalam Khan FA, Jadhav K, Damale M, Akber Ansari S, Alkahtani HM, Ali Khan A, Shinde SD, Patil R, Sangshetti JN. Fungal biofilm inhibition by piperazine-sulphonamide linked Schiff bases: Design, synthesis, and biological evaluation. Arch Pharm (Weinheim) 2018. [DOI: 10.1002/ardp.201700354] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Rajendra H. Patil
- Department of Biotechnology; Savitribai Phule Pune University; Pune India
| | - Firoz A. Kalam Khan
- Department of Pharmaceutical Chemistry; Oriental College of Pharmacy; Navi Mumbai India
| | - Kaivalya Jadhav
- Y. B. Chavan College of Pharmacy; Dr. Rafiq Zakaria Campus; Aurangabad India
| | - Manoj Damale
- Shreeyash Institute of Pharmaceutical Education and Research; Aurangabad India
| | - Siddique Akber Ansari
- Department of Pharmaceutical Chemistry; College of Pharmacy, King Saud University; Riyadh Saudi Arabia
| | - Hamad M. Alkahtani
- Department of Pharmaceutical Chemistry; College of Pharmacy, King Saud University; Riyadh Saudi Arabia
| | - Azmat Ali Khan
- Department of Pharmaceutical Chemistry; College of Pharmacy, King Saud University; Riyadh Saudi Arabia
| | | | - Rajesh Patil
- Sinhgad Technical Education Society's; Smt. Kashibai Navale College of Pharmacy, Kondhwa (Bk); Pune India
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10
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Zhang S, Kolluru L, Vedula SK, Whippie D, Jin J. Carbon-carbon bond forming reactions via Pd-catalyzed detellurative homocoupling of diorganyl tellurides. Tetrahedron Lett 2017. [DOI: 10.1016/j.tetlet.2017.07.087] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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11
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Rao NS, Shaik AB, Routhu SR, Hussaini SMA, Sunkari S, Rao AVS, Reddy AM, Alarifi A, Kamal A. New Quinoline Linked Chalcone and Pyrazoline Conjugates: Molecular Properties Prediction, Antimicrobial and Antitubercular Activities. ChemistrySelect 2017. [DOI: 10.1002/slct.201602022] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- N. Sankara Rao
- Medicinal Chemistry and Pharmacology; CSIR-Indian Institute of Chemical Technolog; Hyderabad 500007 India
| | - Anver Basha Shaik
- Medicinal Chemistry and Pharmacology; CSIR-Indian Institute of Chemical Technolog; Hyderabad 500007 India
| | - Sunitha Rani Routhu
- Medicinal Chemistry and Pharmacology; CSIR-Indian Institute of Chemical Technolog; Hyderabad 500007 India
| | - S. M. Ali Hussaini
- Medicinal Chemistry and Pharmacology; CSIR-Indian Institute of Chemical Technolog; Hyderabad 500007 India
| | - Satish Sunkari
- Medicinal Chemistry and Pharmacology; CSIR-Indian Institute of Chemical Technolog; Hyderabad 500007 India
| | - A. V. Subba Rao
- Medicinal Chemistry and Pharmacology; CSIR-Indian Institute of Chemical Technolog; Hyderabad 500007 India
| | - A. Malla Reddy
- Medicinal Chemistry and Pharmacology; CSIR-Indian Institute of Chemical Technolog; Hyderabad 500007 India
| | - Abdullah Alarifi
- Chemistry Department; College of Science; King Saud University; Riyadh 11451 Saudi Arabia
| | - Ahmed Kamal
- Medicinal Chemistry and Pharmacology; CSIR-Indian Institute of Chemical Technolog; Hyderabad 500007 India
- Chemistry Department; College of Science; King Saud University; Riyadh 11451 Saudi Arabia
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12
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Antileishmanial evaluation of clubbed bis(indolyl)-pyridine derivatives: One-pot synthesis, in vitro biological evaluations and in silico ADME prediction. Bioorg Med Chem Lett 2017; 27:567-573. [DOI: 10.1016/j.bmcl.2016.12.018] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2016] [Revised: 12/03/2016] [Accepted: 12/06/2016] [Indexed: 11/19/2022]
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13
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Khan FAK, Patil RH, Patil M, Arote R, Shinde DB, Sangshetti JN. Bacterial Peptide Deformylase Inhibition of Tetrazole-Substituted Biaryl Acid Analogs: Synthesis, Biological Evaluations, and Molecular Docking Study. Arch Pharm (Weinheim) 2016; 349:934-943. [DOI: 10.1002/ardp.201600254] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2016] [Revised: 10/12/2016] [Accepted: 10/13/2016] [Indexed: 11/11/2022]
Affiliation(s)
| | - Rajendra H. Patil
- Department of Biotechnology; Savitribai Phule Pune University; Pune India
| | - Manjiri Patil
- Department of Biotechnology; Savitribai Phule Pune University; Pune India
| | - Rohidas Arote
- Department of Molecular Genetics and Dental Research Institute, School of Dentistry; Seoul National University; Seoul Republic of Korea
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