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Abstract
Although fragment-based drug discovery (FBDD) has been successfully implemented and well-explored for protein targets, its feasibility for RNA targets is emerging. Despite the challenges associated with the selective targeting of RNA, efforts to integrate known methods of RNA binder discovery with fragment-based approaches have been fruitful, as a few bioactive ligands have been identified. Here, we review various fragment-based approaches implemented for RNA targets and provide insights into experimental design and outcomes to guide future work in the area. Indeed, investigations surrounding the molecular recognition of RNA by fragments address rather important questions such as the limits of molecular weight that confer selective binding and the physicochemical properties favorable for RNA binding and bioactivity.
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Affiliation(s)
- Blessy M. Suresh
- UF Scripps Biomedical Research & The Scripps Research Institute, Department of Chemistry, 130 Scripps Way, Jupiter, Florida 33458, United States
| | - Amirhossein Taghavi
- UF Scripps Biomedical Research & The Scripps Research Institute, Department of Chemistry, 130 Scripps Way, Jupiter, Florida 33458, United States
| | - Jessica L. Childs-Disney
- UF Scripps Biomedical Research & The Scripps Research Institute, Department of Chemistry, 130 Scripps Way, Jupiter, Florida 33458, United States
| | - Matthew D. Disney
- UF Scripps Biomedical Research & The Scripps Research Institute, Department of Chemistry, 130 Scripps Way, Jupiter, Florida 33458, United States
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2
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Shaaban MR, Farghaly TA, Khormi AY, Farag AM. Recent Advances in Synthesis and Uses of Heterocycles-based Palladium(II) Complexes as Robust, Stable, and Low-cost Catalysts for Suzuki- Miyaura Crosscouplings. CURR ORG CHEM 2019. [DOI: 10.2174/1385272823666190620121845] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
C-C cross-couplings constitute the largest diversity of organic reactions of chemical, biomedical, and industrial significance. They are also among the most frequently encountered reactions used in the synthesis of numerous drugs and relevant pharmaceutical substances. Development of an easily accessed, efficient, stable, and low cost catalyst is an attractive area of research in such kind of organic synthesis. This review highlights the remarkable and recent achievements made recently in the synthesis and use of palladium(II) complexes catalysts, that are based on heterocycles as ligands in their constitution, in the Suzuki-Miyaura cross-coupling.
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Affiliation(s)
- Mohamed R. Shaaban
- Department of Chemistry, Faculty of Science, Cairo University, Giza 12613, Egypt
| | - Thoraya. A. Farghaly
- Department of Chemistry, Faculty of Science, Cairo University, Giza 12613, Egypt
| | - Afaf Y. Khormi
- Department of Chemistry, Faculty of Applied Science, Umm Al-Qura University, Makkah Almukaramah, Saudi Arabia
| | - Ahmad M. Farag
- Department of Chemistry, Faculty of Science, Cairo University, Giza 12613, Egypt
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4
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Naveen, Rajkumar V, Babu SA, Gopalakrishnan B. Pd(II)-Catalyzed Bidentate Directing Group-Aided Chemoselective Acetoxylation of Remote ε-C(sp2)–H Bonds in Heteroaryl–Aryl-Based Biaryl Systems. J Org Chem 2016; 81:12197-12211. [DOI: 10.1021/acs.joc.6b01933] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Naveen
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Mohali, Knowledge
City, Sector 81, SAS Nagar, Mohali, Manauli, Punjab 140306, India
| | - Vadla Rajkumar
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Mohali, Knowledge
City, Sector 81, SAS Nagar, Mohali, Manauli, Punjab 140306, India
| | - Srinivasarao Arulananda Babu
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Mohali, Knowledge
City, Sector 81, SAS Nagar, Mohali, Manauli, Punjab 140306, India
| | - Bojan Gopalakrishnan
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Mohali, Knowledge
City, Sector 81, SAS Nagar, Mohali, Manauli, Punjab 140306, India
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5
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Wang D, Chen HG, Tian XC, Liang XX, Chen FZ, Gao F. Room-temperature palladium-catalysed Suzuki–Miyaura coupling of arylboric acid with aryl chlorides. RSC Adv 2015. [DOI: 10.1039/c5ra19790b] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
Abstract
The first room-temperature Suzuki–Miyaura coupling of aryl-boronic acid with aryl chlorides catalyzed by a Pd(OAc)2/NiXantphos-based system is communicated.
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Affiliation(s)
- Dan Wang
- Department of Chinese Traditional Herbal
- Agronomy College
- Sichuan Agricultural University
- Chengdu 611130
- P. R. China
| | - Hong-Guan Chen
- Department of Chinese Traditional Herbal
- Agronomy College
- Sichuan Agricultural University
- Chengdu 611130
- P. R. China
| | - Xin-Chuan Tian
- Department of Chinese Traditional Herbal
- Agronomy College
- Sichuan Agricultural University
- Chengdu 611130
- P. R. China
| | - Xiao-Xia Liang
- Department of Chinese Traditional Herbal
- Agronomy College
- Sichuan Agricultural University
- Chengdu 611130
- P. R. China
| | - Feng-Zhen Chen
- School of Bioengineering
- Chengdu University
- Chengdu 610106
- P. R.China
| | - Feng Gao
- Department of Chinese Traditional Herbal
- Agronomy College
- Sichuan Agricultural University
- Chengdu 611130
- P. R. China
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Trinh TN, Hizartzidis L, Lin AJS, Harman DG, McCluskey A, Gordon CP. An efficient continuous flow approach to furnish furan-based biaryls. Org Biomol Chem 2014; 12:9562-71. [PMID: 25333944 DOI: 10.1039/c4ob01641f] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Suzuki cross-couplings of 5-formyl-2-furanylboronic acid with activated or neutral aryl bromides were performed under continuous flow conditions in the presence of (Bu)4N(+)F(-) and the immobilised t-butyl based palladium catalyst CatCart™ FC1032™. Deactivated aryl bromides and activated aryl chlorides were cross-coupled with 5-formyl-2-furanylboronic in the presence of (Bu)4N(+)OAc(-) using the bis-triphenylphosphine CatCart™ PdCl2(PPh3)2-DVB. Initial evidence indicates the latter method may serve as a universal approach to conduct Suzuki cross-couplings with the protocol successfully employed in the synthesis of the current gold standard Hedgehog pathway inhibitor LDE225.
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Affiliation(s)
- Trieu N Trinh
- Chemistry, Centre for Chemical Biology, The University of Newcastle, University Drive, Callaghan, NSW 2308, Australia.
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Le TS, Asahara H, Kobiro K, Sugimoto R, Saigo K, Nishiwaki N. Synthesis of 2-Aryl-5-Nitropyridines by Three-Component Ring Transformation of 3,5-Dinitro-2-Pyridone. ASIAN J ORG CHEM 2014. [DOI: 10.1002/ajoc.201300282] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Kumar S, Dwivedi AP, Kashyap VK, Saxena A, Dwivedi A, Srivastava R, Sahu DP. Synthesis and biological evaluation of trans 6-methoxy-1,1-dimethyl-2-phenyl-3-aryl-2,3-dihydro-1H-inden-4-yloxyalkylamine derivatives against drug susceptible, non-replicating M. tuberculosis H37Rv and clinical multidrug resistant strains. Bioorg Med Chem Lett 2013; 23:2404-7. [DOI: 10.1016/j.bmcl.2013.02.030] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2012] [Revised: 01/24/2013] [Accepted: 02/06/2013] [Indexed: 10/27/2022]
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Abid OUR, Nawaz M, Ibad MF, Khera RA, Iaroshenko V, Langer P. Synthesis of functionalized arylpyridines and -pyrimidines by domino [4+2]/retro [4+2] cycloadditions of electron-rich dienes with alkynylpyridines and -pyrimidines. Org Biomol Chem 2011; 9:2185-91. [DOI: 10.1039/c0ob00755b] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Janin YL. Antituberculosis drugs: ten years of research. Bioorg Med Chem 2007; 15:2479-513. [PMID: 17291770 DOI: 10.1016/j.bmc.2007.01.030] [Citation(s) in RCA: 360] [Impact Index Per Article: 21.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2006] [Revised: 12/26/2006] [Accepted: 01/17/2007] [Indexed: 02/03/2023]
Abstract
Tuberculosis is today amongst the worldwide health threats. As resistant strains of Mycobacterium tuberculosis have slowly emerged, treatment failure is too often a fact, especially in countries lacking the necessary health care organisation to provide the long and costly treatment adapted to patients. Because of lack of treatment or lack of adapted treatment, at least two million people will die of tuberculosis this year. Due to this concern, this infectious disease was the focus of renewed scientific interest in the last decade. Regimens were optimized and much was learnt on the mechanisms of action of the antituberculosis drugs used. Moreover, the quest for original drugs overcoming some of the problems of current regimens also became the focus of research programmes and many new series of M. tuberculosis growth inhibitors were reported. This review presents the drugs currently used in antituberculosis treatments and the most advanced compounds undergoing clinical trials. We then provide a description of their mechanism of action along with other series of inhibitors known to act on related biochemical targets. This is followed by other inhibitors of M. tuberculosis growth, including recently reported compounds devoid of a reported mechanism of action.
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Affiliation(s)
- Yves L Janin
- URA 2128 CNRS-Institut Pasteur, 28 rue du Dr. Roux, 75724 Paris Cedex 15, France.
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