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Sung DB, Lee JS. Natural-product-based fluorescent probes: recent advances and applications. RSC Med Chem 2023; 14:412-432. [PMID: 36970151 PMCID: PMC10034199 DOI: 10.1039/d2md00376g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Accepted: 12/19/2022] [Indexed: 12/24/2022] Open
Abstract
Fluorescent probes are attractive tools for biology, drug discovery, disease diagnosis, and environmental analysis. In bioimaging, these easy-to-operate and inexpensive probes can be used to detect biological substances, obtain detailed cell images, track in vivo biochemical reactions, and monitor disease biomarkers without damaging biological samples. Over the last few decades, natural products have attracted extensive research interest owing to their great potential as recognition units for state-of-the-art fluorescent probes. This review describes representative natural-product-based fluorescent probes and recent discoveries, with a particular focus on fluorescent bioimaging and biochemical studies.
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Affiliation(s)
- Dan-Bi Sung
- Marine Natural Products Chemistry Laboratory, Korea Institute of Ocean Science and Technology Busan Republic of Korea
| | - Jong Seok Lee
- Marine Natural Products Chemistry Laboratory, Korea Institute of Ocean Science and Technology Busan Republic of Korea
- Department of Marine Biotechnology, Korea University of Science and Technology Daejeon Republic of Korea
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Ikeda A, Omote M, Kusumoto K, Komori M, Tarui A, Sato K, Ando A. A dramatic enhancing effect of InBr3 towards the oxidative Sonogashira cross-coupling reaction of 2-ethynylanilines. Org Biomol Chem 2016; 14:2127-33. [PMID: 26782816 DOI: 10.1039/c5ob02558c] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The addition of InBr3 to the oxidative Sonogashira cross-coupling reaction of 2-ethynylaniline with (E)-trimethyl(3,3,3-trifluoroprop-1-enyl)silane led to a dramatic increase in the reactivity to afford the corresponding 1,3-enynes bearing a trifluoromethyl group on their terminal sp(2) carbon. The subsequent cyclization of these 1,3-enynes under palladium catalysis provides access to the corresponding indoles bearing a 3,3,3-trifluoroprop-1-enyl group at their 2-position.
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Affiliation(s)
- A Ikeda
- Faculty of Pharmaceutical Sciences, Setsunan University, 45-1 Nagaotoge-cho, Hirakata, Osaka 573-0101, Japan.
| | - M Omote
- Faculty of Pharmaceutical Sciences, Setsunan University, 45-1 Nagaotoge-cho, Hirakata, Osaka 573-0101, Japan.
| | - K Kusumoto
- Faculty of Pharmaceutical Sciences, Setsunan University, 45-1 Nagaotoge-cho, Hirakata, Osaka 573-0101, Japan.
| | - M Komori
- Faculty of Pharmaceutical Sciences, Setsunan University, 45-1 Nagaotoge-cho, Hirakata, Osaka 573-0101, Japan.
| | - A Tarui
- Faculty of Pharmaceutical Sciences, Setsunan University, 45-1 Nagaotoge-cho, Hirakata, Osaka 573-0101, Japan.
| | - K Sato
- Faculty of Pharmaceutical Sciences, Setsunan University, 45-1 Nagaotoge-cho, Hirakata, Osaka 573-0101, Japan.
| | - A Ando
- Faculty of Pharmaceutical Sciences, Setsunan University, 45-1 Nagaotoge-cho, Hirakata, Osaka 573-0101, Japan.
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Synthesis of the phorboxazoles—potent, architecturally novel marine natural products. J Antibiot (Tokyo) 2016; 69:220-52. [DOI: 10.1038/ja.2016.8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2015] [Revised: 01/14/2016] [Accepted: 01/19/2016] [Indexed: 11/08/2022]
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Jiao JY, Zhang XG, Zhang XH. Pd-catalyzed decarboxylative coupling of arylalkynyl carboxylic acids with allyl ethers: regioselective synthesis of branched 1,3-enynes. Tetrahedron 2015. [DOI: 10.1016/j.tet.2015.10.036] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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Ikeda A, Omote M, Kusumoto K, Tarui A, Sato K, Ando A. One-pot synthesis of 1,3-enynes with a CF3 group on the terminal sp2 carbon by an oxidative Sonogashira cross-coupling reaction. Org Biomol Chem 2015. [DOI: 10.1039/c5ob01290b] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
One-pot synthesis of 1,3-enynes with a CF3 group on the terminal sp2 carbon was achieved by an oxidative Sonogashira cross-coupling reaction with (E)-trimethyl(3,3,3-trifluoroprop-1-enyl)silane.
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Affiliation(s)
- Akari Ikeda
- Faculty of Pharmaceutical Sciences
- Setsunan University
- Hirakata
- Japan
| | - Masaaki Omote
- Faculty of Pharmaceutical Sciences
- Setsunan University
- Hirakata
- Japan
| | - Kana Kusumoto
- Faculty of Pharmaceutical Sciences
- Setsunan University
- Hirakata
- Japan
| | - Atsushi Tarui
- Faculty of Pharmaceutical Sciences
- Setsunan University
- Hirakata
- Japan
| | - Kazuyuki Sato
- Faculty of Pharmaceutical Sciences
- Setsunan University
- Hirakata
- Japan
| | - Akira Ando
- Faculty of Pharmaceutical Sciences
- Setsunan University
- Hirakata
- Japan
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Mao M, Xiao S, He H, Cao Q, Zou K. Fluorescent labeling of oleanolic acid using ‘click’ chemistry. HETEROCYCL COMMUN 2013. [DOI: 10.1515/hc-2013-0071] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Kuntiyong P, Lee TH, Kranemann CL, White JD. Total synthesis of the marine toxin phorboxazole A using palladium(II)-mediated intramolecular alkoxycarbonylation for tetrahydropyran synthesis. Org Biomol Chem 2012; 10:7884-99. [PMID: 22910851 DOI: 10.1039/c2ob25766a] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The potent antitumor agent phorboxazole A was synthesized from six subunits comprising C1-C2 (115), C3-C8 (98), C9-C19 (74), C20-C32 (52), C33-C41 (84) and C42-C46 (85). Tetrahydropyrans B and C containing cis-2,6-disubstitution were fabricated via palladium(II)-mediated intramolecular alkoxycarbonylation which, in the case of tetrahydropyran C, was carried out with catalytic palladium(II) and p-benzoquinone as the stoichiometric re-oxidant. Tetrahydropyran D was obtained by a stereoselective tin(IV)-catalyzed coupling of a C9 aldehyde with an allylsilane, and the C19-C20 connection was made using a completely stereoselective Wittig-Schlosser (E) olefination. Coupling of the oxazole C32 methyl substituent with the intact C33-C46 δ-lactone 3was accompanied by elimination of the vinyl bromide to a terminal alkyne, but the C32-C33 linkage was implemented successfully with 83 and C33-C41 lactone 84. The C42-C46 segment of the side chain was then appended via Julia-Kocienski olefination. The macrolide portion of phorboxazole A was completed by means of an Ando-Still-Gennari intramolecular (Z)-selective olefination at C2-C3 which required placement of a (dimethoxyphosphinyl)acetate moiety at C24. Final deprotection led to phorboxazole A via a route in which the longest linear sequence is 37 steps and the overall yield is 0.36%.
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Affiliation(s)
- Punlop Kuntiyong
- Department of Chemistry, Oregon State University, Corvallis, Oregon, USA
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Shao YL, Zhang XH, Han JS, Zhong P. Pd(II)-Catalyzed Dehydrogenative Olefination of Terminal Arylalkynes with Allylic Ethers: General and Selective Access to Linear (Z)-1,3-Enynes. Org Lett 2012; 14:5242-5. [DOI: 10.1021/ol302400p] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Yin-Lin Shao
- College of Chemistry and Materials Engineering and Oujiang College, Wenzhou University, Wenzhou 325035, China
| | - Xiao-Hong Zhang
- College of Chemistry and Materials Engineering and Oujiang College, Wenzhou University, Wenzhou 325035, China
| | - Jiang-Sheng Han
- College of Chemistry and Materials Engineering and Oujiang College, Wenzhou University, Wenzhou 325035, China
| | - Ping Zhong
- College of Chemistry and Materials Engineering and Oujiang College, Wenzhou University, Wenzhou 325035, China
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Wang B, Hansen TM, Weyer L, Wu D, Wang T, Christmann M, Lu Y, Ying L, Engler MM, Cink RD, Lee CS, Ahmed F, Forsyth CJ. Total Synthesis of Phorboxazole A via de Novo Oxazole Formation: Convergent Total Synthesis. J Am Chem Soc 2010; 133:1506-16. [DOI: 10.1021/ja1089099] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Wang B, Hansen TM, Wang T, Wu D, Weyer L, Ying L, Engler MM, Sanville M, Leitheiser C, Christmann M, Lu Y, Chen J, Zunker N, Cink RD, Ahmed F, Lee CS, Forsyth CJ. Total Synthesis of Phorboxazole A via de Novo Oxazole Formation: Strategy and Component Assembly. J Am Chem Soc 2010; 133:1484-505. [DOI: 10.1021/ja108906e] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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La Clair JJ. Natural product mode of action (MOA) studies: a link between natural and synthetic worlds. Nat Prod Rep 2010; 27:969-95. [DOI: 10.1039/b909989c] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Chinchilla R, Najera C. The Sonogashira Reaction: A Booming Methodology in Synthetic Organic Chemistry. Chem Rev 2007; 107:874-922. [PMID: 17305399 DOI: 10.1021/cr050992x] [Citation(s) in RCA: 2259] [Impact Index Per Article: 132.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Rafael Chinchilla
- Departamento de Química Orgánica and Instituto de Síntesis Orgánica (ISO), Universidad de Alicante, Facultad de Ciencias, Apartado 99, 03080 Alicante, Spain.
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J. Forsyth C, Ying L. Synthesis of a 16-Triazole Phorboxazole A Analog via Intramolecular Triazole Formation. HETEROCYCLES 2007. [DOI: 10.3987/com-07-s(u)63] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Wang B, Forsyth CJ. Stereoselective Synthesis of the Phorboxazole A Macrolide by Ring-Closing Metathesis. Org Lett 2006; 8:5223-6. [PMID: 17078683 DOI: 10.1021/ol0619922] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
[Structure: see text] Described is a regio- and stereoselective ring-closing metathesis (RCM) to form the C2-C3 alkene of the macrolide-containing domain of phorboxazole A. This work demonstrates a dramatic effect of reaction solvent on RCM product (E/Z)-selectivity. This process offers an alternative assembly of the macrolide-containing domain of phorboxazole A, one of the most potent anticancer agents known.
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Affiliation(s)
- Bo Wang
- Department of Chemistry, Institute of Technology, University of Minnesota, 207 Pleasant Street Southeast, Minneapolis, Minnesota 55455, USA
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Forsyth CJ, Ying L, Chen J, La Clair JJ. Phorboxazole Analogues Induce Association of cdk4 with Extranuclear Cytokeratin Intermediate Filaments. J Am Chem Soc 2006; 128:3858-9. [PMID: 16551063 DOI: 10.1021/ja057087e] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The cellular localization profile and molecular association of the phorboxazoles were examined with a streamlined target elucidation system using synthetic fluorescent probes. Cellular image analyses identified the binding of phorboxazole analogues to cytosolic components. Proteomic analysis directed at fluorescently labeled cytosolic fractions indicated that the primary targets observed microscopically were cytokeratins, as verified by determination of low nanomolar binding to cloned and expressed proteins. Phorboxazole probes localized the essential cell cycle promoter cdk4 upon cytokeratin networks.
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Affiliation(s)
- Craig J Forsyth
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, USA.
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