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Yu Y, Cui Y, Song B. The cooperation between orf virus and Staphylococcus aureus leads to intractable lesions in skin infection. Front Cell Infect Microbiol 2024; 13:1213694. [PMID: 38259972 PMCID: PMC10800892 DOI: 10.3389/fcimb.2023.1213694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2023] [Accepted: 10/31/2023] [Indexed: 01/24/2024] Open
Abstract
A large amount of evidence shows that different kinds of microorganisms can jointly cope with environmental pressures including cell hosts. For example, in many cases, it has been found that secondary or mixed infection of animals caused by ORFV (an epitheliophilic Parapoxvirus) and bacteria (such as Staphylococcus aureus or Streptococcus) shows a mutual aid mode that indirectly leads to the deterioration of the disease. However, the lack of research on the co-pathogenic mechanism, including how to hijack and destroy the cell host in the pathological microenvironment, has hindered the in-depth understanding of the pathogenic process and consequences of this complex infection and the development of clinical treatment methods. Here, we summarized the current strategies of trapping cell hosts together, based on the previously defined ORFV-Host (O-H) system. The opportunistic invasion of S. aureus destroyed the delicate dynamic balance of the O-H, thus aggravating tissue damage through bacterial products (mediated by Agr), even causing sepsis or inducing cytokine storms. In fact, the virus products from its adaptive regulatory system (VARS) weaken the immune attacks and block molecular pathways, so that S. aureus can settle there more smoothly, and the toxins can penetrate into local tissues more quickly. This paper focuses on the main challenges faced by cell hosts in dealing with mixed infection, which provides a starting point for us to deal with this disease in the future.
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Affiliation(s)
- Yongzhong Yu
- College of Biological Science and Technology, Heilongjiang Bayi Agricultural University, Daqing, China
| | - Yudong Cui
- College of Biological Science and Technology, Heilongjiang Bayi Agricultural University, Daqing, China
| | - Baifen Song
- College of Veterinary Medicine, China Agricultural University, Beijing, China
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2
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Alkhimova LE, Babashkina MG, Safin DA. α-Aminophosphonates 4-XC 6H 4-NH-CH(4-BrC 6H 4)-P(O)(O iPr) 2 (X = H, Br, MeO): Crystal structures, Hirshfeld surface analysis, computational studies and in silico molecular docking with the SARS-CoV-2 proteins. Tetrahedron 2021; 97:132376. [PMID: 34366492 PMCID: PMC8330156 DOI: 10.1016/j.tet.2021.132376] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2021] [Revised: 07/13/2021] [Accepted: 07/30/2021] [Indexed: 12/16/2022]
Abstract
We report structural and computational studies of three α-aminophosphonates 4-XC6H4-NH-CH(4-BrC6H4)-P(O)(OiPr)2, namely diisopropyl((4-bromophenyl)(phenylamino)methyl)phosphonate (X = H, 1), diisopropyl((4-bromophenyl)((4-bromophenyl)amino)methyl)phosphonate (X = Br, 2) and diisopropyl((4-bromophenyl)((4-methoxyphenyl)amino)methyl)phosphonate (X = MeO, 3). The structures of 1-3 were fully confirmed by means of the 31P{1H} and 1H NMR spectroscopy. Crystal structures of 2 and 3 are isostructural and each contain two independent molecules in the asymmetric unit cell. Energy frameworks have been calculated to analyze the overall crystal packing of 1-3. The DFT calculations were performed to verify the structures of 1-3 as well as their electronic and optical properties. Molecular docking was applied to examine the influence of both the (S)- and (R)-enantiomers of 1-3 on a series of the SARS-CoV-2 proteins.
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Affiliation(s)
- Larisa E. Alkhimova
- University of Tyumen, Volodarskogo Str. 6, 625003, Tyumen, Russian Federation
| | - Maria G. Babashkina
- Institute of Condensed Matter and Nanosciences, Université Catholique de Louvain, Place L. Pasteur 1, 1348, Louvain-la-Neuve, Belgium
| | - Damir A. Safin
- University of Tyumen, Volodarskogo Str. 6, 625003, Tyumen, Russian Federation,Kurgan State University, Sovetskaya Str. 63/4, 640020, Kurgan, Russian Federation,Innovation Center for Chemical and Pharmaceutical Technologies, Ural Federal University named after the First President of Russia B.N. Eltsin, Mira Str. 19, 620002, Ekaterinburg, Russian Federation,Corresponding author. University of Tyumen, Volodarskogo Str. 6, 625003, Tyumen, Russian Federation
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3
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Walczak M, Chryplewicz A, Olewińska S, Psurski M, Winiarski Ł, Torzyk K, Oleksyszyn J, Sieńczyk M. Phosphonic Analogs of Alanine as Acylpeptide Hydrolase Inhibitors. Chem Biodivers 2021; 18:e2001004. [PMID: 33427376 DOI: 10.1002/cbdv.202001004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Accepted: 01/08/2021] [Indexed: 11/12/2022]
Abstract
Acylpeptide hydrolase is a serine protease, which, together with prolyl oligopeptidase, dipeptidyl peptidase IV and oligopeptidase B, belongs to the prolyl oligopeptidase family. Its primary function is associated with the removal of N-acetylated amino acid residues from proteins and peptides. Although the N-acylation occurs in 50-90 % of eukaryotic proteins, the precise functions of this modification remains unclear. Recent findings have indicated that acylpeptide hydrolase participates in various events including oxidized proteins degradation, amyloid β-peptide cleavage, and response to DNA damage. Considering the protein degradation cycle cross-talk between acylpeptide hydrolase and proteasome, inhibition of the first enzyme resulted in down-regulation of the ubiquitin-proteasome system and induction of cancer cell apoptosis. Acylpeptide hydrolase has been proposed as an interesting target for the development of new potential anticancer agents. Here, we present the synthesis of simple derivatives of (1-aminoethyl)phosphonic acid diaryl esters, phosphonic analogs of alanine diversified at the N-terminus and ester rings, as inhibitors of acylpeptide hydrolase and discuss the ability of the title compounds to induce apoptosis of U937 and MV-4-11 tumor cell lines.
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Affiliation(s)
- Maciej Walczak
- Wroclaw University of Science and Technology, Department of Organic and Medicinal Chemistry, Faculty of Chemistry, Wybrzeze Wyspianskiego 27, 50-370, Wroclaw, Poland
| | - Agnieszka Chryplewicz
- Wroclaw University of Science and Technology, Department of Organic and Medicinal Chemistry, Faculty of Chemistry, Wybrzeze Wyspianskiego 27, 50-370, Wroclaw, Poland
| | - Sandra Olewińska
- Wroclaw University of Science and Technology, Department of Organic and Medicinal Chemistry, Faculty of Chemistry, Wybrzeze Wyspianskiego 27, 50-370, Wroclaw, Poland
| | - Mateusz Psurski
- Department of Experimental Oncology, Hirszfeld Institute of Immunology and Experimental Therapy, Polish Academy of Sciences, Weigla 12, 53-114, Wroclaw, Poland
| | - Łukasz Winiarski
- Wroclaw University of Science and Technology, Department of Organic and Medicinal Chemistry, Faculty of Chemistry, Wybrzeze Wyspianskiego 27, 50-370, Wroclaw, Poland
| | - Karolina Torzyk
- Wroclaw University of Science and Technology, Department of Organic and Medicinal Chemistry, Faculty of Chemistry, Wybrzeze Wyspianskiego 27, 50-370, Wroclaw, Poland
| | - Józef Oleksyszyn
- Wroclaw University of Science and Technology, Department of Organic and Medicinal Chemistry, Faculty of Chemistry, Wybrzeze Wyspianskiego 27, 50-370, Wroclaw, Poland
| | - Marcin Sieńczyk
- Wroclaw University of Science and Technology, Department of Organic and Medicinal Chemistry, Faculty of Chemistry, Wybrzeze Wyspianskiego 27, 50-370, Wroclaw, Poland
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4
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Recent Developments in Peptidyl Diaryl Phoshonates as Inhibitors and Activity-Based Probes for Serine Proteases. Pharmaceuticals (Basel) 2019; 12:ph12020086. [PMID: 31185654 PMCID: PMC6631691 DOI: 10.3390/ph12020086] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2019] [Revised: 06/06/2019] [Accepted: 06/08/2019] [Indexed: 12/12/2022] Open
Abstract
This review presents current achievements in peptidyl diaryl phosphonates as covalent, specific mechanism-based inhibitors of serine proteases. Along three decades diaryl phosphonates have emerged as invaluable tools in fundamental and applicative studies involving these hydrolases. Such an impact has been promoted by advantageous features that characterize the phosphonate compounds and their use. First, the synthesis is versatile and allows comprehensive structural modification and diversification. Accordingly, reactivity and specificity of these bioactive molecules can be easily controlled by appropriate adjustments of the side chains and the leaving groups. Secondly, the phosphonates target exclusively serine proteases and leave other oxygen and sulfur nucleophiles intact. Synthetic accessibility, lack of toxicity, and promising pharmacokinetic properties make them good drug candidates. In consequence, the utility of peptidyl diaryl phosphonates continuously increases and involves novel enzymatic targets and innovative aspects of application. For example, conjugation of the structures of specific inhibitors with reporter groups has become a convenient approach to construct activity-based molecular probes capable of monitoring location and distribution of serine proteases.
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Moreno-Cinos C, Sassetti E, Salado IG, Witt G, Benramdane S, Reinhardt L, Cruz CD, Joossens J, Van der Veken P, Brötz-Oesterhelt H, Tammela P, Winterhalter M, Gribbon P, Windshügel B, Augustyns K. α-Amino Diphenyl Phosphonates as Novel Inhibitors of Escherichia coli ClpP Protease. J Med Chem 2019; 62:774-797. [PMID: 30571121 DOI: 10.1021/acs.jmedchem.8b01466] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Increased Gram-negative bacteria resistance to antibiotics is becoming a global problem, and new classes of antibiotics with novel mechanisms of action are required. The caseinolytic protease subunit P (ClpP) is a serine protease conserved among bacteria that is considered as an interesting drug target. ClpP function is involved in protein turnover and homeostasis, stress response, and virulence among other processes. The focus of this study was to identify new inhibitors of Escherichia coli ClpP and to understand their mode of action. A focused library of serine protease inhibitors based on diaryl phosphonate warheads was tested for ClpP inhibition, and a chemical exploration around the hit compounds was conducted. Altogether, 14 new potent inhibitors of E. coli ClpP were identified. Compounds 85 and 92 emerged as most interesting compounds from this study due to their potency and, respectively, to its moderate but consistent antibacterial properties as well as the favorable cytotoxicity profile.
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Affiliation(s)
- Carlos Moreno-Cinos
- Laboratory of Medicinal Chemistry , University of Antwerp , Universiteitsplein 1 , B-2610 Antwerp , Belgium
| | - Elisa Sassetti
- Fraunhofer Institute for Molecular Biology and Applied Ecology, ScreeningPort , Schnackenburgallee 114 , 22525 Hamburg , Germany.,Department of Life Sciences and Chemistry , Jacobs University Bremen gGmbH , Campus Ring 1 , 28759 Bremen , Germany
| | - Irene G Salado
- Laboratory of Medicinal Chemistry , University of Antwerp , Universiteitsplein 1 , B-2610 Antwerp , Belgium
| | - Gesa Witt
- Fraunhofer Institute for Molecular Biology and Applied Ecology, ScreeningPort , Schnackenburgallee 114 , 22525 Hamburg , Germany
| | - Siham Benramdane
- Laboratory of Medicinal Chemistry , University of Antwerp , Universiteitsplein 1 , B-2610 Antwerp , Belgium
| | - Laura Reinhardt
- Interfaculty Institute for Microbiology and Infection Medicine , University of Tübingen , Auf der Morgenstelle 28 , 72076 Tübingen , Germany
| | - Cristina D Cruz
- Drug Research Program, Division of Pharmaceutical Biosciences , University of Helsinki , Viikinkaari 5E , FI-00014 Helsinki , Finland
| | - Jurgen Joossens
- Laboratory of Medicinal Chemistry , University of Antwerp , Universiteitsplein 1 , B-2610 Antwerp , Belgium
| | - Pieter Van der Veken
- Laboratory of Medicinal Chemistry , University of Antwerp , Universiteitsplein 1 , B-2610 Antwerp , Belgium
| | - Heike Brötz-Oesterhelt
- Interfaculty Institute for Microbiology and Infection Medicine , University of Tübingen , Auf der Morgenstelle 28 , 72076 Tübingen , Germany
| | - Päivi Tammela
- Drug Research Program, Division of Pharmaceutical Biosciences , University of Helsinki , Viikinkaari 5E , FI-00014 Helsinki , Finland
| | - Mathias Winterhalter
- Department of Life Sciences and Chemistry , Jacobs University Bremen gGmbH , Campus Ring 1 , 28759 Bremen , Germany
| | - Philip Gribbon
- Fraunhofer Institute for Molecular Biology and Applied Ecology, ScreeningPort , Schnackenburgallee 114 , 22525 Hamburg , Germany
| | - Björn Windshügel
- Fraunhofer Institute for Molecular Biology and Applied Ecology, ScreeningPort , Schnackenburgallee 114 , 22525 Hamburg , Germany
| | - Koen Augustyns
- Laboratory of Medicinal Chemistry , University of Antwerp , Universiteitsplein 1 , B-2610 Antwerp , Belgium
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Wang Q, Wang X, Sun Y, Yang X, Zhang L, Zhang Q, Hu ZQ, Hu HY. Ratiometric fluorescent probes for selective and sensitive visualization of bacterial microenvironment protease activity. Chem Commun (Camb) 2019; 55:5064-5067. [DOI: 10.1039/c9cc00953a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Two novel FRET probes for selective real-time ratiometric imaging of SspA activity in live S. aureus cells.
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Affiliation(s)
- Qinghua Wang
- State Key Laboratory of Bioactive Substances and Function of Natural Medicine
- Beijing Key Laboratory of Active Substances Discovery and Drugability Evaluation
- Institute of Materia Medica
- Peking Union Medical College and Chinese Academy of Medical Sciences
- Beijing
| | - Xiang Wang
- State Key Laboratory of Bioactive Substances and Function of Natural Medicine
- Beijing Key Laboratory of Active Substances Discovery and Drugability Evaluation
- Institute of Materia Medica
- Peking Union Medical College and Chinese Academy of Medical Sciences
- Beijing
| | - Ying Sun
- State Key Laboratory of Bioactive Substances and Function of Natural Medicine
- Beijing Key Laboratory of Active Substances Discovery and Drugability Evaluation
- Institute of Materia Medica
- Peking Union Medical College and Chinese Academy of Medical Sciences
- Beijing
| | - Xiaoxiao Yang
- State Key Laboratory of Bioactive Substances and Function of Natural Medicine
- Beijing Key Laboratory of Active Substances Discovery and Drugability Evaluation
- Institute of Materia Medica
- Peking Union Medical College and Chinese Academy of Medical Sciences
- Beijing
| | - Leilei Zhang
- State Key Laboratory of Bioactive Substances and Function of Natural Medicine
- Beijing Key Laboratory of Active Substances Discovery and Drugability Evaluation
- Institute of Materia Medica
- Peking Union Medical College and Chinese Academy of Medical Sciences
- Beijing
| | - Qingyang Zhang
- State Key Laboratory of Bioactive Substances and Function of Natural Medicine
- Beijing Key Laboratory of Active Substances Discovery and Drugability Evaluation
- Institute of Materia Medica
- Peking Union Medical College and Chinese Academy of Medical Sciences
- Beijing
| | - Zhi-Qiang Hu
- College of Chemistry and Molecular Engineering
- Qingdao University of Science and Technology
- Qingdao
- China
| | - Hai-Yu Hu
- State Key Laboratory of Bioactive Substances and Function of Natural Medicine
- Beijing Key Laboratory of Active Substances Discovery and Drugability Evaluation
- Institute of Materia Medica
- Peking Union Medical College and Chinese Academy of Medical Sciences
- Beijing
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7
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Discovery of small molecule protease inhibitors by investigating a widespread human gut bacterial biosynthetic pathway. Tetrahedron 2018. [DOI: 10.1016/j.tet.2018.03.043] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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8
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Frankowski S, Gajda T, Albrecht Ł. Isothiocyanate Strategy for the Synthesis of Quaternary α-Amino Acids Bearing a Spirocyclic Ring System. Adv Synth Catal 2018. [DOI: 10.1002/adsc.201701642] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Sebastian Frankowski
- Institute of Organic Chemistry; Department of Chemistry; Lodz University of Technology; Zeromskiego 116, 90-924 Łódź Poland
| | - Tadeusz Gajda
- Institute of Organic Chemistry; Department of Chemistry; Lodz University of Technology; Zeromskiego 116, 90-924 Łódź Poland
| | - Łukasz Albrecht
- Institute of Organic Chemistry; Department of Chemistry; Lodz University of Technology; Zeromskiego 116, 90-924 Łódź Poland
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9
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Cervera-Villanueva JMJ, Viveros-Ceballos JL, Linzaga-Elizalde I, Ordóñez M. Practical synthesis of novel phosphonopeptides containing AibP. J Pept Sci 2015; 22:70-5. [DOI: 10.1002/psc.2841] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2015] [Revised: 11/07/2015] [Accepted: 11/09/2015] [Indexed: 12/13/2022]
Affiliation(s)
| | - José Luis Viveros-Ceballos
- Secretaría Académica; Universidad Autónoma del Estado de Morelos; Av. Universidad 1001 62209 Cuernavaca Morelos Mexico
| | - Irma Linzaga-Elizalde
- Centro de Investigaciones Químicas CIQ-IICBA; Universidad Autónoma del Estado de Morelos; Av. Universidad 1001 62209 Cuernavaca Morelos Mexico
| | - Mario Ordóñez
- Centro de Investigaciones Químicas CIQ-IICBA; Universidad Autónoma del Estado de Morelos; Av. Universidad 1001 62209 Cuernavaca Morelos Mexico
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10
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Ordóñez M, Viveros-Ceballos JL, Cativiela C, Sayago FJ. An update on the stereoselective synthesis of α-aminophosphonic acids and derivatives. Tetrahedron 2015. [DOI: 10.1016/j.tet.2015.01.029] [Citation(s) in RCA: 67] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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11
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van Soom J, Cuzzucoli Crucitti G, Gladysz R, van der Veken P, Di Santo R, Stuyver I, Buck V, Lambeir AM, Magdolen V, Joossens J, Augustyns K. The first potent diphenyl phosphonate KLK4 inhibitors with unexpected binding kinetics. MEDCHEMCOMM 2015. [DOI: 10.1039/c5md00288e] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
We report the first highly potent and selective small-molecule KLK4 inhibitors, showing surprising reversible binding kinetics.
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12
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Substrate profiling of Finegoldia magna SufA protease, inhibitor screening and application to prevent human fibrinogen degradation and bacteria growth in vitro. Biochimie 2014; 103:137-43. [DOI: 10.1016/j.biochi.2014.05.006] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2013] [Accepted: 05/12/2014] [Indexed: 11/21/2022]
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13
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Skoreński M, Oleksyszyn J, Sieńczyk M. A convenient method for the one-step synthesis of phosphonic peptides. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2013.07.049] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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