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Vaskevych A, Dekhtyar M, Vovk M. Cyclizations of Alkenyl(Alkynyl)-Functionalized Quinazolinones and their Heteroanalogues: A Powerful Strategy for the Construction of Polyheterocyclic Structures. CHEM REC 2024; 24:e202300255. [PMID: 37830463 DOI: 10.1002/tcr.202300255] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 09/28/2023] [Indexed: 10/14/2023]
Abstract
Quinazolin-4-one, its heteroanalogues, and derivatives represent an outstandingly important class of compounds in modern organic, medicinal, and pharmaceutical chemistry, as these molecular structures are noted for their wide synthetic and pharmacological potential. In the last years, ever-increasing research attention has been paid to quinazolinone derivatives bearing alkenyl and alkynyl substituents on the pyrimidinone nucleus. The original structural combination of synthetically powerful endocyclic amidine (or amidine-related) and exocyclic unsaturated moieties provides a driving force for cyclizations, which offer an efficient toolkit to construct a variety of fused pyrimidine systems with saturated N- and N,S-heterocycles. In this connection, the present review article is mainly aimed at systematic coverage of the progress in using alkenyl(alkynyl)quinazolinones and their heteroanalogues as convenient bifunctional substrates for regioselective annulation of small- and medium-sized heterocyclic nuclei. Much attention is paid to elucidating the structural and electronic effects of reagents on the regio- and stereoselectivity of the cyclizations as well as to clarifying the relevant reaction mechanisms.
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Affiliation(s)
- Alla Vaskevych
- Institute of Organic Chemistry, National Academy of Sciences of Ukraine, Academician Kukhar str., 5, Kyiv 02660, Ukraine
| | - Maryna Dekhtyar
- Institute of Organic Chemistry, National Academy of Sciences of Ukraine, Academician Kukhar str., 5, Kyiv, 02660, Ukraine
| | - Mykhailo Vovk
- Institute of Organic Chemistry, National Academy of Sciences of Ukraine, Academician Kukhar str., 5, Kyiv, 02660, Ukraine
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Saito R, Goto M, Katakura S, Ohba T, Kawata R, Nagatsu K, Higashi S, Kurisu K, Matsumoto K, Ohtsuka K. Pterin-based small molecule inhibitor capable of binding to the secondary pocket in the active site of ricin-toxin A chain. PLoS One 2022; 17:e0277770. [PMID: 36508422 PMCID: PMC9744275 DOI: 10.1371/journal.pone.0277770] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 11/03/2022] [Indexed: 12/14/2022] Open
Abstract
The Ricin toxin A chain (RTA), which depurinates an adenine base at a specific region of the ribosome leading to death, has two adjacent specificity pockets in its active site. Based on this structural information, many attempts have been made to develop small-molecule RTA inhibitors that simultaneously block the two pockets. However, no attempt has been successful. In the present study, we synthesized pterin-7-carboxamides with tripeptide pendants and found that one of them interacts with both pockets simultaneously to exhibit good RTA inhibitory activity. X-ray crystallographic analysis of the RTA crystal with the new inhibitor revealed that the conformational change of Tyr80 is an important factor that allows the inhibitors to plug the two pockets simultaneously.
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Affiliation(s)
- Ryota Saito
- Department of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba, Japan
- Research Center for Materials with Integrated Properties, Toho University, Funabashi, Chiba, Japan
| | - Masaru Goto
- Department of Molecular Bioscience, Faculty of Science, Toho University, Funabashi, Chiba, Japan
| | - Shun Katakura
- Department of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba, Japan
| | - Taro Ohba
- Department of Molecular Bioscience, Faculty of Science, Toho University, Funabashi, Chiba, Japan
| | - Rena Kawata
- Department of Molecular Bioscience, Faculty of Science, Toho University, Funabashi, Chiba, Japan
| | - Kazuki Nagatsu
- Department of Molecular Bioscience, Faculty of Science, Toho University, Funabashi, Chiba, Japan
| | - Shoko Higashi
- Department of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba, Japan
| | - Kaede Kurisu
- Department of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba, Japan
| | - Kaori Matsumoto
- Department of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba, Japan
| | - Kouta Ohtsuka
- Department of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba, Japan
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Goto M, Higashi S, Ohba T, Kawata R, Nagatsu K, Suzuki S, Anslyn EV, Saito R. Conformational change in ricin toxin A-Chain: A critical factor for inhibitor binding to the secondary pocket. Biochem Biophys Res Commun 2022; 627:1-4. [PMID: 35998389 DOI: 10.1016/j.bbrc.2022.08.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 08/03/2022] [Indexed: 11/28/2022]
Abstract
Ricin toxin A-chain (RTA), a toxic protein from Ricinus communis, inactivates ribosomes to induce toxicity. The active site of RTA consists of two binding pockets. Many studies have focused on developing RTA inhibitors that can simultaneously bind to these critical pockets; however, almost all the inhibitors developed so far interact with only one pocket. In the present study, we discovered that pterin-7-carboxamides with aromatic l-amino acid pendants interacted with the active site of the enzyme in a 2-to-1 mode, where one inhibitor molecule bound to the primary pocket and the second one entered the secondary pocket in the active site of RTA. X-ray crystallographic analysis of inhibitor/RTA complexes revealed that the conformational changes of Tyr80 and Asn122 in RTA were critical for triggering the entry of inhibitor molecules into the secondary pocket of the RTA active site.
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Affiliation(s)
- Masaru Goto
- Department of Molecular Bioscience, Faculty of Science, Toho University, Funabashi, Chiba, 274-8510, Japan
| | - Shoko Higashi
- Department of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba, 274-8510, Japan
| | - Taro Ohba
- Department of Molecular Bioscience, Faculty of Science, Toho University, Funabashi, Chiba, 274-8510, Japan
| | - Rena Kawata
- Department of Molecular Bioscience, Faculty of Science, Toho University, Funabashi, Chiba, 274-8510, Japan
| | - Kazuki Nagatsu
- Department of Molecular Bioscience, Faculty of Science, Toho University, Funabashi, Chiba, 274-8510, Japan
| | - Saori Suzuki
- Department of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba, 274-8510, Japan
| | - Eric V Anslyn
- Department of Chemistry, The University of Texas at Austin, Austin, TX, 78712, United States
| | - Ryota Saito
- Department of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba, 274-8510, Japan; Research Center for Materials with Integrated Properties, Toho University, Funabashi, Chiba, 274-8510, Japan.
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Bennett Z, Grumbles K, Pruet J. Comparative routes to 7-carboxymethyl-pterin: A useful medicinal chemistry building block. Pteridines 2022. [DOI: 10.1515/pteridines-2022-0036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Abstract
Pterins, such as folate and biopterin, and their derivatives hold significant importance given their biological relevance, as well as the numerous pterin-based inhibitors developed for targeting various biological targets. For this reason, pterins can be viewed as a privileged scaffold, as the discovery of new pterin analogs gives rise to a vast array of potential drug candidates. 7-carboxymethyl-pterin (7-CMP) represents a useful scaffold for the rapid generation of structurally diverse pterin amides and has been a key building block in medicinal chemistry. In an effort to facilitate rapid generation of this pterin scaffold, we have explored multiple routes towards 7-CMP to assess the most efficient method of generation. Methods were evaluated based on yield, regioselectivity, reaction time, and hazardous reaction conditions. This work can aide in the synthesis and discovery of new pterin-based drug candidates.
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Affiliation(s)
- Zachary Bennett
- Department of Chemistry, Valparaiso University , Valparaiso , IN , USA
| | - Kassidy Grumbles
- Department of Chemistry, Valparaiso University , Valparaiso , IN , USA
| | - Jeffrey Pruet
- Department of Chemistry, Valparaiso University , Valparaiso , IN , USA
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Zhang X, Chen H, Zhang X, Xu L, Lei Y, Liu W, Li L, Xu H, Zhu C, Ma B. β-Aldehyde ketones as dual inhibitors of aldose reductase and α-glucosidase with antioxidant properties. NEW J CHEM 2022. [DOI: 10.1039/d1nj03426j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The synthesized β-aldehyde ketone compounds have strong biological activity because of their ionizable hydroxyl groups.
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Affiliation(s)
- Xiaonan Zhang
- School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Zhongguancun South Street, 100081 Beijing, China
| | - Huan Chen
- School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Zhongguancun South Street, 100081 Beijing, China
| | - Xin Zhang
- School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Zhongguancun South Street, 100081 Beijing, China
| | - Long Xu
- School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Zhongguancun South Street, 100081 Beijing, China
| | - Yanqi Lei
- School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Zhongguancun South Street, 100081 Beijing, China
| | - Wenchao Liu
- School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Zhongguancun South Street, 100081 Beijing, China
| | - Lingyun Li
- School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Zhongguancun South Street, 100081 Beijing, China
| | - Hulin Xu
- Beijing Qintian Science & Technology Development Co., Ltd, China
| | - Changjin Zhu
- School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Zhongguancun South Street, 100081 Beijing, China
| | - Bing Ma
- School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Zhongguancun South Street, 100081 Beijing, China
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Bockman AR, Pruet JM. Exploring the scope of DBU-promoted amidations of 7-methoxycarbonylpterin. Beilstein J Org Chem 2020; 16:509-514. [PMID: 32273911 PMCID: PMC7113547 DOI: 10.3762/bjoc.16.46] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Accepted: 03/19/2020] [Indexed: 11/23/2022] Open
Abstract
The synthetic utility of pterins is often hampered by the notorious insolubility of this heterocycle, slowing the development of medicinally relevant pteridine derivatives. Reactions which expedite the development of new pterins are thus of great importance. Through a dual role of diazabicycloundecene (DBU), 7-carboxymethylpterin is converted to the soluble DBU salt, with additional DBU promoting an ester-to-amide transformation. We have explored this reaction to assess its scope and identify structural features in the amines which significantly affect success, monitored the reaction kinetics using a pseudo-first order kinetics model, and further adapted the reaction conditions to allow for product formation in as little as 5 min, with yields often >80%.
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Affiliation(s)
- Anna R Bockman
- Department of Chemistry, Valparaiso University, 1710 Chapel Dr, Valparaiso, IN 46383, USA
| | - Jeffrey M Pruet
- Department of Chemistry, Valparaiso University, 1710 Chapel Dr, Valparaiso, IN 46383, USA
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Carmona-Martínez V, Ruiz-Alcaraz AJ, Vera M, Guirado A, Martínez-Esparza M, García-Peñarrubia P. Therapeutic potential of pteridine derivatives: A comprehensive review. Med Res Rev 2018; 39:461-516. [PMID: 30341778 DOI: 10.1002/med.21529] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2018] [Revised: 07/07/2018] [Accepted: 07/10/2018] [Indexed: 12/19/2022]
Abstract
Pteridines are aromatic compounds formed by fused pyrazine and pyrimidine rings. Many living organisms synthesize pteridines, where they act as pigments, enzymatic cofactors, or immune system activation molecules. This variety of biological functions has motivated the synthesis of a huge number of pteridine derivatives with the aim of studying their therapeutic potential. This review gathers the state-of-the-art of pteridine derivatives, describing their biological activities and molecular targets. The antitumor activity of pteridine-based compounds is one of the most studied and advanced therapeutic potentials, for which several molecular targets have been identified. Nevertheless, pteridines are also considered as very promising therapeutics for the treatment of chronic inflammation-related diseases. On the other hand, many pteridine derivatives have been tested for antimicrobial activities but, although some of them resulted to be active in preliminary assays, a deeper research is needed in this area. Moreover, pteridines may be of use in the treatment of many other diseases, such as diabetes, osteoporosis, ischemia, or neurodegeneration, among others. Thus, the diversity of the biological activities shown by these compounds highlights the promising therapeutic use of pteridine derivatives. Indeed, methotrexate, pralatrexate, and triamterene are Food and Drug Administration approved pteridines, while many others are currently under study in clinical trials.
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Affiliation(s)
- Violeta Carmona-Martínez
- Departamento de Bioquímica, Biología Molecular (B) e Inmunología, Facultad de Medicina, IMIB and Regional Campus of International Excellence "Campus Mare Nostrum," Universidad de Murcia, Murcia, Spain
| | - Antonio J Ruiz-Alcaraz
- Departamento de Bioquímica, Biología Molecular (B) e Inmunología, Facultad de Medicina, IMIB and Regional Campus of International Excellence "Campus Mare Nostrum," Universidad de Murcia, Murcia, Spain
| | - María Vera
- Departamento de Química Orgánica, Universidad de Murcia, Campus de Espinardo, Murcia, Spain
| | - Antonio Guirado
- Departamento de Química Orgánica, Universidad de Murcia, Campus de Espinardo, Murcia, Spain
| | - María Martínez-Esparza
- Departamento de Bioquímica, Biología Molecular (B) e Inmunología, Facultad de Medicina, IMIB and Regional Campus of International Excellence "Campus Mare Nostrum," Universidad de Murcia, Murcia, Spain
| | - Pilar García-Peñarrubia
- Departamento de Bioquímica, Biología Molecular (B) e Inmunología, Facultad de Medicina, IMIB and Regional Campus of International Excellence "Campus Mare Nostrum," Universidad de Murcia, Murcia, Spain
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Dewanjee S, Das S, Das AK, Bhattacharjee N, Dihingia A, Dua TK, Kalita J, Manna P. Molecular mechanism of diabetic neuropathy and its pharmacotherapeutic targets. Eur J Pharmacol 2018; 833:472-523. [DOI: 10.1016/j.ejphar.2018.06.034] [Citation(s) in RCA: 117] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2017] [Revised: 06/15/2018] [Accepted: 06/26/2018] [Indexed: 02/07/2023]
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Abstract
CONTEXT Cephalosporins are derived from the fungus Acremonium. Due to their strong bactericidal ability, these drugs have to a wide usage in medicine. OBJECTIVE An investigation of the effects on sheep renal aldose reductase (AR) and sorbitol dehydrogenase (SDH) of cefoperazone, cefazolin, cefuroxime, ceftazidime and ceftriaxone as cephalosporin drugs was carried out in the present study. METHODS AR and SDH were purified from sheep kidney by ion exchange, gel filtration and affinity methods with approximately 219- and 484-fold, respectively. Some kinetic properties of the enzymes were determined such as optimal pH, optimal ionic strength, optimal temperature, stable pH, Km and Vmax. IC50 values of the drugs were found for each enzyme. RESULTS While the AR was inhibited by all drugs, SDH enzyme was inhibited by only CXM (IC50 8.10 mM). Interestingly, CZO activated SDH enzyme. This result was evaluated as important for the flow of the polyol reactions. Ki values and inhibition types were determined for AR. However, these values could not have determined for SDH, due to insufficient inhibition. CONCLUSIONS From these results, it was concluded that cephalosporins may have an important effect on flow of the polyol metabolism.
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Affiliation(s)
- Bülent Şengül
- a Department of Health Care Service, Vocational School of Health Service , Bayburt University , Bayburt , Turkey
| | - Şükrü Beydemir
- b Department of Biochemistry, Faculty of Pharmacy , Anadolu University , Eskişehir , Turkey
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Zhang J, Liu R, Kuang HY, Gao XY, Liu HL. Protective treatments and their target retinal ganglion cells in diabetic retinopathy. Brain Res Bull 2017; 132:53-60. [DOI: 10.1016/j.brainresbull.2017.05.007] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2017] [Accepted: 05/10/2017] [Indexed: 12/19/2022]
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Aslan HE, Beydemir Ş. Phenolic compounds: The inhibition effect on polyol pathway enzymes. Chem Biol Interact 2017; 266:47-55. [DOI: 10.1016/j.cbi.2017.01.021] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2016] [Accepted: 01/26/2017] [Indexed: 10/20/2022]
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