1
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Mehta D, Crumley EK, Lou J, Dzikovski B, Best MD, Waxham MN, Heberle FA. Halogenated Cholesterol Alters the Phase Behavior of Ternary Lipid Membranes. J Phys Chem B 2025; 129:671-683. [PMID: 39772574 DOI: 10.1021/acs.jpcb.4c06318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2025]
Abstract
Eukaryotic plasma membranes exhibit nanoscale lateral lipid heterogeneity, a feature that is thought to be central to their function. Studying these heterogeneities is challenging since few biophysical methods are capable of detecting domains at submicron length scales. We recently showed that cryogenic electron microscopy (cryo-EM) can directly image nanoscale liquid-liquid phase separation in extruded liposomes due to its ability to resolve the intrinsic thickness and electron density differences of ordered and disordered phases. However, the intensity contrast between these phases is poor compared with conventional fluorescence microscopy and is thus both a limiting factor and a focal point for optimization. Because the fundamental source of intensity contrast is the spatial variation in electron density within the bilayer, lipid modifications aimed at selectively increasing the electron density of one phase might enhance the ability to resolve coexisting phases. To this end, we investigated model membrane mixtures of DPPC/DOPC/cholesterol in which one hydrogen of cholesterol's C19 methyl group was replaced by an electron-rich halogen atom (either bromine or iodine). We characterized the phase behavior as a function of composition and temperature using fluorescence microscopy, Förster resonance energy transfer, and cryo-EM. Our data suggest that halogenated cholesterol variants distribute approximately evenly between liquid-ordered and liquid-disordered phases and are thus ineffective at enhancing the intensity difference between them. Furthermore, replacing more than half of the native cholesterol with halogenated cholesterol variants dramatically reduces the size of the membrane domains. Our results reinforce how small changes in the sterol structure can have a large impact on the lateral organization of membrane lipids.
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Affiliation(s)
- Deeksha Mehta
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37916, United States
| | - Elizabeth K Crumley
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37916, United States
| | - Jinchao Lou
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37916, United States
| | - Boris Dzikovski
- ACERT, National Biomedical Center for Advanced ESR Technology, Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Michael D Best
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37916, United States
| | - M Neal Waxham
- Department of Neurobiology and Anatomy, University of Texas Health Science Center, Houston, Texas 77030, United States
| | - Frederick A Heberle
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37916, United States
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2
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Sharma KD, Doktorova M, Waxham MN, Heberle FA. Cryo-EM images of phase-separated lipid bilayer vesicles analyzed with a machine-learning approach. Biophys J 2024; 123:2877-2891. [PMID: 38689500 PMCID: PMC11393711 DOI: 10.1016/j.bpj.2024.04.029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 03/08/2024] [Accepted: 04/26/2024] [Indexed: 05/02/2024] Open
Abstract
Lateral lipid heterogeneity (i.e., raft formation) in biomembranes plays a functional role in living cells. Three-component mixtures of low- and high-melting lipids plus cholesterol offer a simplified experimental model for raft domains in which a liquid-disordered (Ld) phase coexists with a liquid-ordered (Lo) phase. Using such models, we recently showed that cryogenic electron microscopy (cryo-EM) can detect phase separation in lipid vesicles based on differences in bilayer thickness. However, the considerable noise within cryo-EM data poses a significant challenge for accurately determining the membrane phase state at high spatial resolution. To this end, we have developed an image-processing pipeline that utilizes machine learning (ML) to predict the bilayer phase in projection images of lipid vesicles. Importantly, the ML method exploits differences in both the thickness and molecular density of Lo compared to Ld, which leads to improved phase identification. To assess accuracy, we used artificial images of phase-separated lipid vesicles generated from all-atom molecular dynamics simulations of Lo and Ld phases. Synthetic ground-truth data sets mimicking a series of compositions along a tieline of Ld + Lo coexistence were created and then analyzed with various ML models. For all tieline compositions, we find that the ML approach can correctly identify the bilayer phase with >90% accuracy, thus providing a means to isolate the intensity profiles of coexisting Ld and Lo phases, as well as accurately determine domain-size distributions, number of domains, and phase-area fractions. The method described here provides a framework for characterizing nanoscopic lateral heterogeneities in membranes and paves the way for a more detailed understanding of raft properties in biological contexts.
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Affiliation(s)
- Karan D Sharma
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee
| | - Milka Doktorova
- Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia
| | - M Neal Waxham
- Department of Neurobiology and Anatomy, University of Texas Health Science Center, Houston, Texas
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3
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Lee S, Bak JH, Lee Y, Jeong DW, Lee J, Lee KK, Cho H, Lee HH, Hyeon C, Choi MC. Water Hydrogen-Bond Mediated Layer by Layer Alignment of Lipid Rafts as a Precursor of Intermembrane Processes. J Am Chem Soc 2024; 146:13846-13853. [PMID: 38652033 DOI: 10.1021/jacs.4c00544] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/25/2024]
Abstract
Lipid rafts, which are dynamic nanodomains in the plasma membrane, play a crucial role in intermembrane processes by clustering together and growing in size within the plane of the membrane while also aligning with each other across different membranes. However, the physical origin of layer by layer alignment of lipid rafts remains to be elucidated. Here, by using fluorescence imaging and synchrotron X-ray reflectivity in a phase-separated multilayer system, we find that the alignment of raft-mimicking Lo domains is regulated by the distance between bilayers. Molecular dynamics simulations reveal that the aligned state is energetically preferred when the intermembrane distance is small due to its ability to minimize the volume of surface water, which has fewer water hydrogen bonds (HBs) compared to bulk water. Our results suggest that water HB-driven alignment of lipid rafts plays a role as a precursor of intermembrane processes such as cell-cell fusion, virus entry, and signaling.
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Affiliation(s)
- Suho Lee
- Department of Bio and Brain Engineering, KAIST, Daejeon 34141, Korea
| | - Ji Hyun Bak
- School of Computational Science, Korea Institute for Advanced Study, Seoul 02455, Korea
| | - Yuno Lee
- School of Computational Science, Korea Institute for Advanced Study, Seoul 02455, Korea
| | - Dae-Woong Jeong
- Department of Bio and Brain Engineering, KAIST, Daejeon 34141, Korea
| | - Jaehee Lee
- Department of Bio and Brain Engineering, KAIST, Daejeon 34141, Korea
| | - KeunMin Ken Lee
- Department of Bio and Brain Engineering, KAIST, Daejeon 34141, Korea
| | - Hasaeam Cho
- Department of Bio and Brain Engineering, KAIST, Daejeon 34141, Korea
| | - Hyun Hwi Lee
- Pohang Accelerator Lab, POSTECH, Pohang 37673, Korea
| | - Changbong Hyeon
- School of Computational Science, Korea Institute for Advanced Study, Seoul 02455, Korea
| | - Myung Chul Choi
- Department of Bio and Brain Engineering, KAIST, Daejeon 34141, Korea
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4
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Punia R, Goel G. Free Energy Surface and Molecular Mechanism of Slow Structural Transitions in Lipid Bilayers. J Chem Theory Comput 2023; 19:8245-8257. [PMID: 37947833 DOI: 10.1021/acs.jctc.3c00856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2023]
Abstract
Lipid membrane remodeling, crucial for many cellular processes, is governed by the coupling of membrane structure and shape fluctuations. Given the importance of the ∼ nm length scale, details of the transition intermediates for conformational change are not fully captured by a continuum-mechanical description. Slow dynamics and the lack of knowledge of reaction coordinates (RCs) for biasing methods pose a challenge for all-atom (AA) simulations. Here, we map system dynamics on Langevin dynamics in a normal mode space determined from an elastic network model representation for the lipid-water Hamiltonian. AA molecular dynamics (MD) simulations are used to determine model parameters, and Langevin dynamics predictions for bilayer structural, mechanical, and dynamic properties are validated against MD simulations and experiments. Transferability to describe the dynamics of a larger lipid bilayer and a heterogeneous membrane-protein system is assessed. A set of generic RCs for pore formation in two tensionless bilayers is obtained by coupling Langevin dynamics to the underlying energy landscape for membrane deformations. Structure evolution is carried out by AA MD, wherein the generic RCs are used in a path metadynamics or an umbrella sampling simulation to determine the thermodynamics of pore formation and its molecular determinants, such as the role of distinct bilayer motions, lipid solvation, and lipid packing.
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Affiliation(s)
- Rajat Punia
- Department of Chemical Engineering, Indian Institute of Technology Delhi, New Delhi 110016, India
| | - Gaurav Goel
- Department of Chemical Engineering, Indian Institute of Technology Delhi, New Delhi 110016, India
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5
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Paez-Perez M, Dent MR, Brooks NJ, Kuimova MK. Viscosity-Sensitive Membrane Dyes as Tools To Estimate the Crystalline Structure of Lipid Bilayers. Anal Chem 2023; 95:12006-12014. [PMID: 37526607 PMCID: PMC10433245 DOI: 10.1021/acs.analchem.3c01747] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2023] [Accepted: 07/12/2023] [Indexed: 08/02/2023]
Abstract
Lipid membranes are crucial for cellular integrity and regulation, and tight control of their structural and mechanical properties is vital to ensure that they function properly. Fluorescent probes sensitive to the membrane's microenvironment are useful for investigating lipid membrane properties; however, there is currently a lack of quantitative correlation between the exact parameters of lipid organization and a readout from these dyes. Here, we investigate this relationship for "molecular rotors", or microviscosity sensors, by simultaneously measuring their fluorescence lifetime to determine the membrane viscosity, while using X-ray diffraction to determine the membrane's structural properties. Our results reveal a phase-dependent correlation between the membrane's structural parameters and mechanical properties measured by a BODIPY-based molecular rotor, giving excellent predictive power for the structural descriptors of the lipid bilayer. We also demonstrate that differences in membrane thickness between different lipid phases are not a prerequisite for the formation of lipid microdomains and that this requirement can be disrupted by the presence of line-active molecules. Our results underpin the use of membrane-sensitive dyes as reporters of the structure of lipid membranes.
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Affiliation(s)
- Miguel Paez-Perez
- MSRH, Department of Chemistry, Imperial College London, Wood Lane, London W12 0BZ, U.K.
| | - Michael R. Dent
- MSRH, Department of Chemistry, Imperial College London, Wood Lane, London W12 0BZ, U.K.
| | - Nicholas J. Brooks
- MSRH, Department of Chemistry, Imperial College London, Wood Lane, London W12 0BZ, U.K.
| | - Marina K. Kuimova
- MSRH, Department of Chemistry, Imperial College London, Wood Lane, London W12 0BZ, U.K.
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6
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Bozelli JC, Yune J, Aulakh SS, Cao Z, Fernandes A, Seitova A, Tong Y, Schreier S, Epand RM. Human Diacylglycerol Kinase ε N-Terminal Segment Regulates the Phosphatidylinositol Cycle, Controlling the Rate but Not the Acyl Chain Composition of Its Lipid Intermediates. ACS Chem Biol 2022; 17:2495-2506. [PMID: 35767833 DOI: 10.1021/acschembio.2c00387] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Diacylglycerol kinase ε (DGKε), an enzyme of the phosphatidylinositol (PI) cycle, bears a highly conserved hydrophobic N-terminal segment, which was proposed to anchor the enzyme into the membrane. However, the importance of this segment to the DGKε function remains to be determined. To address this question, it is here reported an in silico and in vitro combined research strategy. Capitalizing on the AlphaFold 2.0 predicted structure of human DGKε, it is shown that its hydrophobic N-terminal segment anchors it into the membrane via a transmembrane α-helix. Coarse-grained based elastic network model studies showed that a conformational change in the hydrophobic N-terminal segment determines the proximity between the active site of DGKε and the membrane-water interface, likely regulating its kinase activity. In vitro studies with a purified DGKε construct lacking the hydrophobic N-terminal segment (His-SUMO*-Δ50-DGKε) corroborated the role of the N-terminus in regulating DGKε enzymatic properties. The comparison between the enzymatic properties of DGKε and His-SUMO*-Δ50-DGKε showed that the conserved N-terminal segment markedly inhibits the enzyme activity and its sensitivity to membrane intrinsic negative curvature, while also playing a role in the modulation of the enzyme by phosphatidylserine. On the other hand, this segment did not strongly affect its diacylglycerol acyl chain specificity, the modulation of the enzyme by membrane morphological changes, or the activation by phosphatidic acid-rich lipid domains. Hence, these results suggest that the conservation of the hydrophobic N-terminal segment of DGKε throughout evolution guaranteed not only membrane anchorage but also an efficient and elegant manner to regulate the rate of the PI cycle.
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Affiliation(s)
- José Carlos Bozelli
- Department of Biochemistry and Biomedical Sciences, McMaster University, Health Sciences Centre, Hamilton, ON L8S 3L8, Canada
| | - Jenny Yune
- Department of Biochemistry and Biomedical Sciences, McMaster University, Health Sciences Centre, Hamilton, ON L8S 3L8, Canada
| | - Sukhvershjit S Aulakh
- Department of Biochemistry and Biomedical Sciences, McMaster University, Health Sciences Centre, Hamilton, ON L8S 3L8, Canada
| | - Zihao Cao
- Department of Biochemistry and Biomedical Sciences, McMaster University, Health Sciences Centre, Hamilton, ON L8S 3L8, Canada
| | - Alexia Fernandes
- Department of Biochemistry and Biomedical Sciences, McMaster University, Health Sciences Centre, Hamilton, ON L8S 3L8, Canada
| | - Alma Seitova
- Structural Genomics Consortium, University of Toronto, Toronto, ON N5G 1L7, Canada
| | - Yufeng Tong
- Department of Chemistry and Biochemistry, University of Windsor, Windsor, ON N9B 3P4, Canada
| | - Shirley Schreier
- Department of Biochemistry, Institute of Chemistry, University of São Paulo, São Paulo 05508-000, Brazil
| | - Richard M Epand
- Department of Biochemistry and Biomedical Sciences, McMaster University, Health Sciences Centre, Hamilton, ON L8S 3L8, Canada
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7
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Shamaeva DV, Okotrub KA, Surovtsev NV. Coexistence of lipid phases in multilayer phospholipid films probed by Raman mapping. Analyst 2022; 147:3748-3755. [DOI: 10.1039/d2an00490a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Raman spectroscopy of stacked phospholipid bilayers reveals the chemical and conformational composition of coexisting domains.
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Affiliation(s)
- Daria V. Shamaeva
- Institute of Automation and Electrometry, Russian Academy of Sciences, pr. Ak. Koptyuga 1, Novosibirsk, 630090, Russia
- Novosibirsk State University, Pirogova 2, Novosibirsk, 630090, Russia
| | - Konstantin A. Okotrub
- Institute of Automation and Electrometry, Russian Academy of Sciences, pr. Ak. Koptyuga 1, Novosibirsk, 630090, Russia
| | - Nikolay V. Surovtsev
- Institute of Automation and Electrometry, Russian Academy of Sciences, pr. Ak. Koptyuga 1, Novosibirsk, 630090, Russia
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8
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Semeraro EF, Marx L, Frewein MPK, Pabst G. Increasing complexity in small-angle X-ray and neutron scattering experiments: from biological membrane mimics to live cells. SOFT MATTER 2021; 17:222-232. [PMID: 32104874 DOI: 10.1039/c9sm02352f] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Small-angle X-ray and neutron scattering are well-established, non-invasive experimental techniques to interrogate global structural properties of biological membrane mimicking systems under physiologically relevant conditions. Recent developments, both in bottom-up sample preparation techniques for increasingly complex model systems, and in data analysis techniques have opened the path toward addressing long standing issues of biological membrane remodelling processes. These efforts also include emerging quantitative scattering studies on live cells, thus enabling a bridging of molecular to cellular length scales. Here, we review recent progress in devising compositional models for joint small-angle X-ray and neutron scattering studies on diverse membrane mimics - with a specific focus on membrane structural coupling to amphiphatic peptides and integral proteins - and live Escherichia coli. In particular, we outline the present state-of-the-art in small-angle scattering methods applied to complex membrane systems, highlighting how increasing system complexity must be followed by an advance in compositional modelling and data-analysis tools.
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Affiliation(s)
- Enrico F Semeraro
- University of Graz, Institute of Molecular Biosciences, Biophysics Division, NAWI Graz, 8010 Graz, Austria. and BioTechMed Graz, 8010 Graz, Austria
| | - Lisa Marx
- University of Graz, Institute of Molecular Biosciences, Biophysics Division, NAWI Graz, 8010 Graz, Austria. and BioTechMed Graz, 8010 Graz, Austria
| | - Moritz P K Frewein
- University of Graz, Institute of Molecular Biosciences, Biophysics Division, NAWI Graz, 8010 Graz, Austria. and BioTechMed Graz, 8010 Graz, Austria and Institut Laue-Langevin, 38000 Grenoble, France
| | - Georg Pabst
- University of Graz, Institute of Molecular Biosciences, Biophysics Division, NAWI Graz, 8010 Graz, Austria. and BioTechMed Graz, 8010 Graz, Austria
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9
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Woodward X, Kelly CV. Single-lipid dynamics in phase-separated supported lipid bilayers. Chem Phys Lipids 2020; 233:104991. [PMID: 33121937 DOI: 10.1016/j.chemphyslip.2020.104991] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Revised: 10/02/2020] [Accepted: 10/06/2020] [Indexed: 11/26/2022]
Abstract
Phase separation is a fundamental organizing mechanism on cellular membranes. Lipid phases have complex dependencies on the membrane composition, curvature, tension, and temperature. Lipid diffusion rates vary by up to ten-fold between liquid-disordered (Ld) and liquid-ordered (Lo) phases depending on the membrane composition, measurement technique, and the surrounding environment. This manuscript reports the lipid diffusion on phase-separated supported lipid bilayers (SLBs) with varying temperature, composition, and lipid phase. Lipid diffusion is measured by single-particle tracking (SPT) and fluorescence correlation spectroscopy (FCS) via custom data acquisition and analysis protocols that apply to diverse membranes systems. Traditionally, SPT is sensitive to diffuser aggregation, whereas the diffusion rates reported by FCS are unaffected by the presence of immobile aggregates. Within this manuscript, we report (1) improved single-particle tracking analysis of lipid diffusion, (2) comparison and consistency between diffusion measurement methods for non-Brownian diffusers, and (3) the application of these methods to measure the phase, temperature, and composition dependencies in lipid diffusion. We demonstrate improved SPT analysis methods that yield consistent FCS and SPT diffusion results even when most fluorescent lipids are frequently confined within aggregates within the membrane. With varying membrane composition and temperature, we demonstrate differences in diffusion between the Ld and Lo phases of SLBs.
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Affiliation(s)
- Xinxin Woodward
- Department of Physics and Astronomy, Wayne State University, Detroit, MI, United States
| | - Christopher V Kelly
- Department of Physics and Astronomy, Wayne State University, Detroit, MI, United States.
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10
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Luo Y, Maibaum L. Modulated and spiral surface patterns on deformable lipid vesicles. J Chem Phys 2020; 153:144901. [PMID: 33086800 DOI: 10.1063/5.0020087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
We investigate the behavior of two-dimensional systems that exhibit a transition between homogeneous and spatially inhomogeneous phases, which have spherical topology, and whose mechanical properties depend on the local value of the order parameter. One example of such a system is multicomponent lipid bilayer vesicles, which serve as a model to study cellular membranes. Under certain conditions, such bilayers separate into coexisting liquid-ordered and liquid-disordered regions. When arranged into the shape of small vesicles, this phase coexistence can result in spatial patterns that are more complex than the basic two-domain configuration encountered in typical bulk systems. The difference in bending rigidity between the liquid-ordered and liquid-disordered regions couples the shape of the vesicle to the local composition. We show that this interplay gives rise to a rich phase diagram that includes homogeneous, separated, and axisymmetric modulated phases that are divided by regions of spiral patterns in the surface morphology.
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Affiliation(s)
- Yongtian Luo
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - Lutz Maibaum
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
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11
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Kinnun JJ, Bolmatov D, Lavrentovich MO, Katsaras J. Lateral heterogeneity and domain formation in cellular membranes. Chem Phys Lipids 2020; 232:104976. [PMID: 32946808 PMCID: PMC7491465 DOI: 10.1016/j.chemphyslip.2020.104976] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Revised: 09/11/2020] [Accepted: 09/12/2020] [Indexed: 12/17/2022]
Abstract
As early as the development of the fluid mosaic model for cellular membranes, researchers began observing the telltale signs of lateral heterogeneity. Over the decades this has led to the development of the lipid raft hypothesis and the ensuing controversy that has unfolded, as a result. Here, we review the physical concepts behind domain formation in lipid membranes, both of their structural and dynamic origins. This, then leads into a discussion of coarse-grained, phenomenological approaches that describe the wide range of phases associated with lipid lateral heterogeneity. We use these physical concepts to describe the interaction between raft-lipid species, such as long-chain saturated lipids, sphingomyelin, and cholesterol, and non-raft forming lipids, such as those with short acyl chains or unsaturated fatty acids. While debate has persisted on the biological relevance of lipid domains, recent research, described here, continues to identify biological roles for rafts and new experimental approaches have revealed the existence of lipid domains in living systems. Given the recent progress on both the biological and structural aspects of raft formation, the research area of membrane lateral heterogeneity will not only expand, but will continue to produce exciting results.
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Affiliation(s)
- Jacob J Kinnun
- Large Scale Structures Group, Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, United States; Shull-Wollan Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States.
| | - Dima Bolmatov
- Large Scale Structures Group, Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, United States; Shull-Wollan Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States; Department of Physics and Astronomy, University of Tennessee, Knoxville, TN 37996, United States.
| | - Maxim O Lavrentovich
- Shull-Wollan Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States; Department of Physics and Astronomy, University of Tennessee, Knoxville, TN 37996, United States.
| | - John Katsaras
- Shull-Wollan Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States; Department of Physics and Astronomy, University of Tennessee, Knoxville, TN 37996, United States; Sample Environment Group, Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, United States.
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12
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Sarmento MJ, Hof M, Šachl R. Interleaflet Coupling of Lipid Nanodomains - Insights From in vitro Systems. Front Cell Dev Biol 2020; 8:284. [PMID: 32411705 PMCID: PMC7198703 DOI: 10.3389/fcell.2020.00284] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2020] [Accepted: 04/02/2020] [Indexed: 01/09/2023] Open
Abstract
The plasma membrane is a complex system, consisting of two layers of lipids and proteins compartmentalized into small structures called nanodomains. Despite the asymmetric composition of both leaflets, coupling between the layers is surprisingly strong. This can be evidenced, for example, by recent experimental studies performed on phospholipid giant unilamellar vesicles showing that nanodomains formed in the outer layer are perfectly registered with those in the inner leaflet. Similarly, microscopic phase separation in one leaflet can induce phase separation in the opposing leaflet that would otherwise be homogeneous. In this review, we summarize the current theoretical and experimental knowledge that led to the current view that domains are – irrespective of their size – commonly registered across the bilayer. Mechanisms inducing registration of nanodomains suggested by theory and calculations are discussed. Furthermore, domain coupling is evidenced by experimental studies based on the sparse number of methods that can resolve registered from independent nanodomains. Finally, implications that those findings using model membrane studies might have for cellular membranes are discussed.
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Affiliation(s)
- Maria J Sarmento
- J. Heyrovský Institute of Physical Chemistry of the Czech Academy of Sciences, Dolejškova, Prague, Czechia
| | - Martin Hof
- J. Heyrovský Institute of Physical Chemistry of the Czech Academy of Sciences, Dolejškova, Prague, Czechia
| | - Radek Šachl
- J. Heyrovský Institute of Physical Chemistry of the Czech Academy of Sciences, Dolejškova, Prague, Czechia
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13
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Membrane Adhesion via Glycolipids Occurs for Abundant Saccharide Chemistries. Biophys J 2020; 118:1602-1611. [PMID: 32097623 DOI: 10.1016/j.bpj.2020.02.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Revised: 01/29/2020] [Accepted: 02/05/2020] [Indexed: 01/03/2023] Open
Abstract
Membrane-bound oligosaccharides with specific chemistries are known to promote tight adhesion between adjacent membranes via the formation of weak saccharide bonds. However, in the literature, one can find scattered evidence that other, more abundant saccharide chemistries exhibit similar behavior. Here, the influence of various glycolipids on the interaction between adjacent membranes is systematically investigated with the help of small- and wide-angle x-ray scattering and complementary neutron diffraction experiments. Added electrostatic repulsion between the membrane surfaces is used to identify the formation of saccharide bonds and to challenge their stability against tensile stress. Some of the saccharide headgroup types investigated are able to bind adjacent membranes together, but this ability has no significant influence on the membrane bending rigidity. Our results indicate that glycolipid-mediated membrane adhesion is a highly abundant phenomenon and therefore potentially of great biological relevance.
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14
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Sibold J, Tewaag VE, Vagedes T, Mey I, Steinem C. Phase separation in pore-spanning membranes induced by differences in surface adhesion. Phys Chem Chem Phys 2020; 22:9308-9315. [DOI: 10.1039/d0cp00335b] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
A porous scaffold providing different adhesion energies alters the behaviour of coexisting phases in lipid membranes considerably.
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Affiliation(s)
- Jeremias Sibold
- Institute of Organic and Biomolecular Chemistry
- University of Göttingen
- 37077 Göttingen
- Germany
| | - Vera E. Tewaag
- Institute of Organic and Biomolecular Chemistry
- University of Göttingen
- 37077 Göttingen
- Germany
| | - Thomas Vagedes
- Institute of Organic and Biomolecular Chemistry
- University of Göttingen
- 37077 Göttingen
- Germany
| | - Ingo Mey
- Institute of Organic and Biomolecular Chemistry
- University of Göttingen
- 37077 Göttingen
- Germany
| | - Claudia Steinem
- Institute of Organic and Biomolecular Chemistry
- University of Göttingen
- 37077 Göttingen
- Germany
- Max Planck Institute for Dynamics and Self-Organization
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15
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Kelley EG, Butler PD, Nagao M. Scaling of lipid membrane rigidity with domain area fraction. SOFT MATTER 2019; 15:2762-2767. [PMID: 30789180 PMCID: PMC8220873 DOI: 10.1039/c8sm02362j] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Biological membranes are highly heterogeneous in composition which in turn leads to local variations in the physical properties. Here we quantify how heterogeneity in stiffness determines the effective bending modulus, κeff, of model phase-separated membranes with coexisting soft fluid and rigid gel domains. We find that the temperature- and composition- dependent trends in membrane rigidity collapse onto a single curve, such that κeff directly scales with the area fraction of the rigid gel domains. Using no adjustable parameters, the measurements are found to agree with theoretical predictions for inhomogenous membranes and indicate that κeff is sensitive to the lateral distribution of the rigid phase within the membrane. This key finding confirms that the properties of heterogeneous membranes can be quantitatively predicted if the area fraction and properties of the individual phases are known.
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Affiliation(s)
- Elizabeth G Kelley
- NIST Center for Neutron Research, National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD, USA.
| | - Paul D Butler
- NIST Center for Neutron Research, National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD, USA. and Department of Chemical and Biomolecular Engineering, University of Delaware, 150 Academy Street, Newark, DE, USA and Department of Chemistry, The University of Tennessee, Knoxville, TN 37996, USA
| | - Michihiro Nagao
- NIST Center for Neutron Research, National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD, USA. and Center for Exploration of Energy and Matter, Indiana University, 2401 N. Milo B. Sampson Lane, Bloomington, IN, USA.
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16
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Britt HM, Mosely JA, Sanderson JM. The influence of cholesterol on melittin lipidation in neutral membranes. Phys Chem Chem Phys 2019; 21:631-640. [DOI: 10.1039/c8cp06661b] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Cholesterol inclusion in membranes influences the rate and selectivity of acyl transfer from lipids to a membrane-embedded peptide.
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17
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Luo Y, Maibaum L. Phase diagrams of multicomponent lipid vesicles: Effects of finite size and spherical geometry. J Chem Phys 2018; 149:174901. [DOI: 10.1063/1.5045499] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Affiliation(s)
- Yongtian Luo
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - Lutz Maibaum
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
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18
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Al-Ayoubi SR, Schinkel PKF, Berghaus M, Herzog M, Winter R. Combined effects of osmotic and hydrostatic pressure on multilamellar lipid membranes in the presence of PEG and trehalose. SOFT MATTER 2018; 14:8792-8802. [PMID: 30339170 DOI: 10.1039/c8sm01343h] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We studied the interaction of lipid membranes with the disaccharide trehalose (TRH), which is known to stabilize biomembranes against various environmental stress factors. Generally, stress factors include low/high temperature, shear, osmotic and hydrostatic pressure. Small-angle X-ray-scattering was applied in combination with fluorescence spectroscopy and calorimetric measurements to get insights into the influence of trehalose on the supramolecular structure, hydration level, and elastic and thermodynamic properties as well as phase behavior of the model biomembrane DMPC, covering a large region of the temperature, osmotic and hydrostatic pressure phase space. We observed distinct effects of trehalose on the topology of the lipid's supramolecular structure. Trehalose, unlike osmotic pressure induced by polyethylene glycol, leads to a decrease of lamellar order and a swelling of multilamellar vesicles, which is attributable to direct interactions between the membrane and trehalose. Our results revealed a distinct biphasic concentration dependence of the observed effects of trehalose. While trehalose intercalates between the polar head groups at low concentrations, the effects after saturation are dominated by the exclusion of trehalose from the membrane surface.
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Affiliation(s)
- Samy R Al-Ayoubi
- Physical Chemistry I - Biophysical Chemistry, Faculty of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Str. 4a, 44227 Dortmund, Germany.
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19
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Allolio C, Haluts A, Harries D. A local instantaneous surface method for extracting membrane elastic moduli from simulation: Comparison with other strategies. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.03.004] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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20
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Heberle FA, Pabst G. Complex biomembrane mimetics on the sub-nanometer scale. Biophys Rev 2017; 9:353-373. [PMID: 28717925 PMCID: PMC5578918 DOI: 10.1007/s12551-017-0275-5] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2017] [Accepted: 06/26/2017] [Indexed: 12/12/2022] Open
Abstract
Biomimetic lipid vesicles are indispensable tools for gaining insight into the biophysics of cell physiology on the molecular level. The level of complexity of these model systems has steadily increased, and now spans from domain-forming lipid mixtures to asymmetric lipid bilayers. Here, we review recent progress in the development and application of elastic neutron and X-ray scattering techniques for studying these systems in situ and under physiologically relevant conditions on the nanometer to sub-nanometer length scales. In particular, we focus on: (1) structural details of coexisting liquid-ordered and liquid-disordered domains, including their thickness and lipid packing mismatch as a function of a size transition from nanoscopic to macroscopic domains; (2) membrane-mediated protein partitioning into lipid domains; (3) the role of the aqueous medium in tuning interactions between membranes and domains; and (4) leaflet-specific structure in asymmetric bilayers and passive lipid flip-flop.
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Affiliation(s)
- Frederick A Heberle
- The Bredesen Center, University of Tennessee, Knoxville, TN, 37996, USA
- Joint Institute for Biological Sciences and Biology and Soft Matter Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Georg Pabst
- Institute of Molecular Biosciences, Biophysics Division, NAWI Graz, University of Graz, 8010, Graz, Austria.
- BioTechMed-Graz, 8010, Graz, Austria.
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21
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Tsang KY, Lai YC, Chiang YW, Chen YF. Coupling of lipid membrane elasticity and in-plane dynamics. Phys Rev E 2017; 96:012410. [PMID: 29347274 DOI: 10.1103/physreve.96.012410] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Indexed: 11/07/2022]
Abstract
Biomembranes exhibit liquid and solid features concomitantly with their in-plane fluidity and elasticity tightly regulated by cells. Here, we present experimental evidence supporting the existence of the dynamics-elasticity correlations for lipid membranes and propose a mechanism involving molecular packing densities to explain them. This paper thereby unifies, at the molecular level, the aspects of the continuum mechanics long used to model the two membrane features. This ultimately may elucidate the universal physical principles governing the cellular phenomena involving biomembranes.
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Affiliation(s)
- Kuan-Yu Tsang
- Department of Chemical and Materials Engineering, National Central University, Taoyuan 32001, Taiwan
| | - Yei-Chen Lai
- Department of Chemistry, National Tsing Hua University, Hsinchu 30013, Taiwan
| | - Yun-Wei Chiang
- Department of Chemistry, National Tsing Hua University, Hsinchu 30013, Taiwan
| | - Yi-Fan Chen
- Department of Chemical and Materials Engineering, National Central University, Taoyuan 32001, Taiwan
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22
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Haataja MP. Lipid Domain Co-localization Induced by Membrane Undulations. Biophys J 2017; 112:655-662. [PMID: 28256225 DOI: 10.1016/j.bpj.2016.12.030] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Revised: 12/11/2016] [Accepted: 12/19/2016] [Indexed: 12/28/2022] Open
Abstract
Multicomponent lipid bilayer membranes display rich phase transition and associated compositional lipid domain formation behavior. When both leaflets of the bilayer contain domains, they are often found co-localized across the leaflets, implying the presence of a thermodynamic interleaflet coupling. In this work, it is demonstrated that fluctuation-induced interactions between domains embedded within opposing membrane leaflets provide a robust means to co-localize the domains. In particular, it is shown via a combination of a mode-counting argument, a perturbative calculation, and a non-perturbative treatment of a special case, that spatial variations in membrane bending rigidity associated with lipid domains embedded within the background phase always lead to an attractive interleaflet coupling with a magnitude of ∼0.01kBT/nm2 in simple model membrane systems. Finally, it is demonstrated that the fluctuation-induced coupling is very robust against membrane tension and substrate interactions.
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Affiliation(s)
- Mikko P Haataja
- Mechanical and Aerospace Engineering, Princeton University, Princeton, New Jersey.
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23
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Abstract
In the plasma membrane of eukaryotic cells, proteins and lipids are organized in clusters, the latter ones often called lipid domains or "lipid rafts." Recent findings highlight the dynamic nature of such domains and the key role of membrane geometry and spatial boundaries. In this study, we used porous substrates with different pore radii to address precisely the extent of the geometric constraint, permitting us to modulate and investigate the size and mobility of lipid domains in phase-separated continuous pore-spanning membranes (PSMs). Fluorescence video microscopy revealed two types of liquid-ordered (lo) domains in the freestanding parts of the PSMs: (i) immobile domains that were attached to the pore rims and (ii) mobile, round-shaped lo domains within the center of the PSMs. Analysis of the diffusion of the mobile lo domains by video microscopy and particle tracking showed that the domains' mobility is slowed down by orders of magnitude compared with the unrestricted case. We attribute the reduced mobility to the geometric confinement of the PSM, because the drag force is increased substantially due to hydrodynamic effects generated by the presence of these boundaries. Our system can serve as an experimental test bed for diffusion of 2D objects in confined geometry. The impact of hydrodynamics on the mobility of enclosed lipid domains can have great implications for the formation and lateral transport of signaling platforms.
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24
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Galimzyanov TR, Kuzmin PI, Pohl P, Akimov SA. Undulations Drive Domain Registration from the Two Membrane Leaflets. Biophys J 2017; 112:339-345. [PMID: 28122219 DOI: 10.1016/j.bpj.2016.12.023] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2016] [Revised: 12/04/2016] [Accepted: 12/12/2016] [Indexed: 02/06/2023] Open
Abstract
Phase separation in biological membranes plays an important role in protein targeting and transmembrane signaling. Its occurrence in both membrane leaflets commonly gives rise to matching liquid or liquid-ordered domains in the opposing monolayers. The underlying mechanism of such co-localization is not fully understood. The decrease of the line tension around the thicker ordered domain constitutes an important driving force. Yet, robust domain coupling requires an additional energy source, which we have now identified as thermal undulations. Our theoretical analysis of elastic deformations in a lipid bilayer shows that stiffer lipid domains tend to distribute into areas with lower fluctuations of monolayer curvature. These areas naturally align in the opposing monolayers. Thus, coupling requires both membrane leafs to display a heterogeneity in splay rigidities. The heterogeneity may either originate from intrinsic lipid properties or be acquired by adsorption of peripheral molecules. Undulations and line tension act synergistically: the gain in energy due a minimized line tension is proportional to domain radius and thus primarily fuels the registration of smaller domains; whereas the energetic contribution of undulations increases with membrane area and thus primarily acts to coalesce larger domains.
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Affiliation(s)
- Timur R Galimzyanov
- Laboratory of Bioelectrochemistry, A. N. Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Moscow, Russia; Department of Theoretical Physics and Quantum Technologies, National University of Science and Technology "MISiS", Moscow, Russia
| | - Peter I Kuzmin
- Laboratory of Bioelectrochemistry, A. N. Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Moscow, Russia
| | - Peter Pohl
- Department of Molecular and Membrane Biophysics, Institute of Biophysics, Johannes Kepler University Linz, Linz, Austria
| | - Sergey A Akimov
- Laboratory of Bioelectrochemistry, A. N. Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Moscow, Russia; Department of Theoretical Physics and Quantum Technologies, National University of Science and Technology "MISiS", Moscow, Russia.
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25
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Nawae W, Hannongbua S, Ruengjitchatchawalya M. Molecular dynamics exploration of poration and leaking caused by Kalata B1 in HIV-infected cell membrane compared to host and HIV membranes. Sci Rep 2017; 7:3638. [PMID: 28620219 PMCID: PMC5472625 DOI: 10.1038/s41598-017-03745-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2016] [Accepted: 05/05/2017] [Indexed: 12/21/2022] Open
Abstract
The membrane disruption activities of kalata B1 (kB1) were investigated using molecular dynamics simulations with membrane models. The models were constructed to mimic the lipid microdomain formation in membranes of HIV particle, HIV-infected cell, and host cell. The differences in the lipid ratios of these membranes caused the formation of liquid ordered (lo) domains of different sizes, which affected the binding and activity of kB1. Stronger kB1 disruptive activity was observed for the membrane with small sized lo domain. Our results show that kB1 causes membrane leaking without bilayer penetration. The membrane poration mechanism involved in the disorganization of the lo domain and in cholesterol inter-leaflet translocation is described. This study enhances our understanding of the membrane activity of kB1, which may be useful for designing novel and potentially therapeutic peptides based on the kB1 framework.
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Affiliation(s)
- Wanapinun Nawae
- Pilot Plant Development and Training Institution, King Mongkut's University of Technology Thonburi (Bang Khun Thian Campus), 49 Soi Thian Thale 25, Bang Khun Thian Chai Thale Rd., Tha Kham, Bang Khun Thian, Bangkok, 10150, Thailand
| | - Supa Hannongbua
- Department of Chemistry, Kasetsart University, 50 Phaholyothin Rd., Ladyao, Chatuchak, Bangkok, Thailand, 10900
| | - Marasri Ruengjitchatchawalya
- Biotechnology Program, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi (Bang KhunThian Campus), 49 Soi Thian Thale 25, Bang Khun Thian Chai Thale Rd., Tha Kham, Bang Khun Thian, Bangkok, 10150, Thailand.
- Bioinformatics and Systems Biology Program, King Mongkut's University of Technology Thonburi (Bang Khun Thian Campus), 49 Soi Thian Thale 25, Bang Khun Thian Chai Thale Rd., Tha Kham, Bang Khun Thian, Bangkok, 10150, Thailand.
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26
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Belička M, Weitzer A, Pabst G. High-resolution structure of coexisting nanoscopic and microscopic lipid domains. SOFT MATTER 2017; 13:1823-1833. [PMID: 28170020 DOI: 10.1039/c6sm02727j] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
We studied coexisting micro- and nanoscopic liquid-ordered/liquid-disordered domains in fully hydrated multilamellar vesicles using small-angle X-ray scattering. Large domains exhibited long-range out-of-plane positional correlations of like domains, consistent with previous reports. In contrast, such correlations were absent in nanoscopic domains. Advancing a global analysis of the in situ data allowed us to gain a deep insight into the structural and elastic properties of the coexisting domains, including the partitioning of cholesterol in each domain. In agreement with a previous report, we found that the thickness mismatch between ordered and disordered domains decreased for nanoscopic domains. At the same time, we found also the lipid packing mismatch to be decreased for nano-domains, mainly due to the liquid-disordered domains becoming more densely packed when decreasing their size.
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Affiliation(s)
- Michal Belička
- University of Graz, Institute of Molecular Biosciences, Biophysics Division, NAWI Graz, Humboldtstr. 50/III, A-8010 Graz, Austria. and BioTechMed-Graz, A-8010 Graz, Austria
| | - Anna Weitzer
- University of Graz, Institute of Molecular Biosciences, Biophysics Division, NAWI Graz, Humboldtstr. 50/III, A-8010 Graz, Austria. and BioTechMed-Graz, A-8010 Graz, Austria
| | - Georg Pabst
- University of Graz, Institute of Molecular Biosciences, Biophysics Division, NAWI Graz, Humboldtstr. 50/III, A-8010 Graz, Austria. and BioTechMed-Graz, A-8010 Graz, Austria
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27
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Min Y. Phase dynamics and domain interactions in biological membranes. Curr Opin Chem Eng 2017. [DOI: 10.1016/j.coche.2016.11.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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28
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Lu BS, Gupta SP, Belička M, Podgornik R, Pabst G. Modulation of Elasticity and Interactions in Charged Lipid Multibilayers: Monovalent Salt Solutions. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2016; 32:13546-13555. [PMID: 27993014 PMCID: PMC5180256 DOI: 10.1021/acs.langmuir.6b03614] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Revised: 11/22/2016] [Indexed: 05/18/2023]
Abstract
We have studied the electrostatic screening effect of NaCl solutions on the interactions between anionic lipid bilayers in the fluid lamellar phase using a Poisson-Boltzmann-based mean-field approach with constant charge and constant potential limiting charge regulation boundary conditions. The full DLVO potential, including the electrostatic, hydration and van der Waals interactions, was coupled to thermal bending fluctuations of the membranes via a variational Gaussian Ansatz. This allowed us to analyze the coupling between the osmotic pressure and the fluctuation amplitudes and compare them both simultaneously with their measured dependence on the bilayer separation, determined by the small-angle X-ray scattering experiments. High-structural resolution analysis of the scattering data revealed no significant changes of membrane structure as a function of salt concentration. Parsimonious description of our results is consistent with the constant charge limit of the general charge regulation phenomenology, with fully dissociated lipid charge groups, together with a 6-fold reduction of the membranes' bending rigidity upon increasing NaCl concentration.
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Affiliation(s)
- Bing-Sui Lu
- Department
of Theoretical Physics, Jožef Stefan
Institute, 1000 Ljubljana, Slovenia
- School
of Physical and Mathematical Sciences, Nanyang
Technological University, 21 Nanyang Link, 637371 Singapore
- E-mail:
| | - Santosh Prasad Gupta
- Institute
of Molecular Biosciences, Biophysics Division,University of Graz, NAWI Graz, Humboldtstraße 50/III, A-8010 Graz, Austria
- BioTechMed-Graz, A-8010 Graz, Austria
| | - Michal Belička
- Institute
of Molecular Biosciences, Biophysics Division,University of Graz, NAWI Graz, Humboldtstraße 50/III, A-8010 Graz, Austria
- BioTechMed-Graz, A-8010 Graz, Austria
| | - Rudolf Podgornik
- Department
of Theoretical Physics, Jožef Stefan
Institute, 1000 Ljubljana, Slovenia
- Department
of Physics, Faculty of Mathematics and Physics, University of Ljubljana, Jadranska ulica 19, SI-1000 Ljubljana, Slovenia
- E-mail:
| | - Georg Pabst
- Institute
of Molecular Biosciences, Biophysics Division,University of Graz, NAWI Graz, Humboldtstraße 50/III, A-8010 Graz, Austria
- BioTechMed-Graz, A-8010 Graz, Austria
- E-mail: . Phone: +43 316 380 4989
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29
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Schmid F. Physical mechanisms of micro- and nanodomain formation in multicomponent lipid membranes. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2016; 1859:509-528. [PMID: 27823927 DOI: 10.1016/j.bbamem.2016.10.021] [Citation(s) in RCA: 73] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2016] [Revised: 10/19/2016] [Accepted: 10/27/2016] [Indexed: 12/17/2022]
Abstract
This article summarizes a variety of physical mechanisms proposed in the literature, which can generate micro- and nanodomains in multicomponent lipid bilayers and biomembranes. It mainly focusses on lipid-driven mechanisms that do not involve direct protein-protein interactions. Specifically, it considers (i) equilibrium mechanisms based on lipid-lipid phase separation such as critical cluster formation close to critical points, and multiple domain formation in curved geometries, (ii) equilibrium mechanisms that stabilize two-dimensional microemulsions, such as the effect of linactants and the effect of curvature-composition coupling in bilayers and monolayers, and (iii) non-equilibrium mechanisms induced by the interaction of a biomembrane with the cellular environment, such as membrane recycling and the pinning effects of the cytoplasm. Theoretical predictions are discussed together with simulations and experiments. The presentation is guided by the theory of phase transitions and critical phenomena, and the appendix summarizes the mathematical background in a concise way within the framework of the Ginzburg-Landau theory. This article is part of a Special Issue entitled: Lipid order/lipid defects and lipid-control of protein activity edited by Dirk Schneider.
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Affiliation(s)
- Friederike Schmid
- Institute of Physics, Johannes Gutenberg University, 55099 Mainz, Germany
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30
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Ho CS, Khadka NK, She F, Cai J, Pan J. Influenza M2 Transmembrane Domain Senses Membrane Heterogeneity and Enhances Membrane Curvature. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2016; 32:6730-6738. [PMID: 27285399 PMCID: PMC5131574 DOI: 10.1021/acs.langmuir.6b00150] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Targeting host cell membranes by M2 of influenza A virus is important for virus invasion and replication. We study the transmembrane domain of M2 (M2TM) interacting with mica-supported planar bilayers and free-standing giant unilamellar vesicles (GUVs). Using solution atomic force microscopy (AFM), we show that the size of M2TM oligomers is dependent on lipid composition. The addition of M2TM to lipid bilayers containing liquid-ordered (Lo) and liquid-disordered (Ld) phases reveals that M2TM preferentially partitions into the Ld phase; phase-dependent partitioning results in a larger rigidity of the Ld phase. We next use fluorescence microscopy to study the effects of M2TM on phase-coexisting GUVs. In particular, M2TM is found to increase GUVs' miscibility transition temperature Tmix. The augmented thermodynamic stability can be accounted for by considering an enhanced energy barrier of lipid mixing between coexisting phases. Our GUV study also shows that M2TM can elicit an array of vesicle shapes mimicking virus budding. M2TM enhanced membrane curvature is consistent with our AFM data, which show altered membrane rigidity and consequently line tension at domain edges. Together, our results highlight that in addition to conducting protons, M2TM can actively regulate membrane heterogeneity and augment membrane curvature.
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Affiliation(s)
- Chian Sing Ho
- Department of Physics, University of South Florida, Tampa, FL 33620, United States
| | - Nawal K. Khadka
- Department of Physics, University of South Florida, Tampa, FL 33620, United States
| | - Fengyu She
- Department of Chemistry, University of South Florida, Tampa, FL 33620, United States
| | - Jianfeng Cai
- Department of Chemistry, University of South Florida, Tampa, FL 33620, United States
| | - Jianjun Pan
- Department of Physics, University of South Florida, Tampa, FL 33620, United States
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31
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Frewein M, Kollmitzer B, Heftberger P, Pabst G. Lateral pressure-mediated protein partitioning into liquid-ordered/liquid-disordered domains. SOFT MATTER 2016; 12:3189-95. [PMID: 27003910 PMCID: PMC5462092 DOI: 10.1039/c6sm00042h] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
We have studied the contributions of stored elastic energies in liquid-ordered (Lo) and liquid-disordered (Ld) domains to transmembrane proteins using the lateral pressure concept. In particular we applied previously reported experimental data for the membrane thickness, intrinsic curvature and bending elasticities of coexisting Lo/Ld domains to calculate whether proteins of simple geometric shapes would preferentially diffuse into Lo or Ld domains and form oligomers of a certain size. For the studied lipid mixture we generally found that proteins with convex shapes prefer sorting to Ld phases and the formation of large clusters. Lo domains in turn would be enriched in monomers of concave shaped proteins. We further observed that proteins which are symmetric with respect to the bilayer center prefer symmetric Lo or Ld domains, while asymmetric proteins favor a location in domains with Lo/Ld asymmetry. In the latter case we additionally retrieved a strong dependence on protein directionality, thus providing a mechanism for transmembrane protein orientation.
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Affiliation(s)
- Moritz Frewein
- University of Graz, Institute of Molecular Biosciences, Biophysics Division, NAWI Graz, Humboldtstr. 50/III, A-8010 Graz, Austria.
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32
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Marquardt D, Heberle FA, Nickels JD, Pabst G, Katsaras J. On scattered waves and lipid domains: detecting membrane rafts with X-rays and neutrons. SOFT MATTER 2015; 11:9055-72. [PMID: 26428538 PMCID: PMC4719199 DOI: 10.1039/c5sm01807b] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2015] [Accepted: 09/21/2015] [Indexed: 05/28/2023]
Abstract
In order to understand the biological role of lipids in cell membranes, it is necessary to determine the mesoscopic structure of well-defined model membrane systems. Neutron and X-ray scattering are non-invasive, probe-free techniques that have been used extensively in such systems to probe length scales ranging from angstroms to microns, and dynamics occurring over picosecond to millisecond time scales. Recent developments in the area of phase separated lipid systems mimicking membrane rafts will be presented, and the underlying concepts of the different scattering techniques used to study them will be discussed in detail.
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Affiliation(s)
- Drew Marquardt
- University of Graz, Institute of Molecular Biosciences, Biophysics Division, NAWI Graz, Humboldtstr. 50/III, Graz, Austria. and BioTechMed-Graz, Graz, Austria
| | - Frederick A Heberle
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA. and Joint Institute for Neutron Sciences, Oak Ridge, Tennessee 37831, USA
| | - Jonathan D Nickels
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA. and Joint Institute for Neutron Sciences, Oak Ridge, Tennessee 37831, USA
| | - Georg Pabst
- University of Graz, Institute of Molecular Biosciences, Biophysics Division, NAWI Graz, Humboldtstr. 50/III, Graz, Austria. and BioTechMed-Graz, Graz, Austria
| | - John Katsaras
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA. and Joint Institute for Neutron Sciences, Oak Ridge, Tennessee 37831, USA
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33
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Parikh AN. Medium Matters: Order through Fluctuations? Biophys J 2015; 108:2751-3. [PMID: 26083909 PMCID: PMC4472223 DOI: 10.1016/j.bpj.2015.05.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2015] [Revised: 05/11/2015] [Accepted: 05/11/2015] [Indexed: 11/24/2022] Open
Affiliation(s)
- Atul N Parikh
- Departments of Biomedical Engineering and Chemical Engineering & Materials Science, University of California, Davis, Davis, California; Centre for Biomimetic Sensor Science, School of Materials Science & Engineering, Nanyang Technological University, Singapore.
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