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Ozeloglu IG, Akman Aydin E. Combining features on vertical ground reaction force signal analysis for multiclass diagnosing neurodegenerative diseases. Int J Med Inform 2024; 191:105542. [PMID: 39096593 DOI: 10.1016/j.ijmedinf.2024.105542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Revised: 06/29/2024] [Accepted: 07/05/2024] [Indexed: 08/05/2024]
Abstract
Neurodegenerative diseases (NDDs), which are caused by the degeneration of neurons and their functions, affect a significant part of the world's population. Although gait disorders are one of the critical and common markers to determine the presence of NDDs, diagnosing which NDD the patients have among a group of NDDs using gait data is still a significant challenge to be addressed. In this study, we addressed the multi-class classification of NDDs and aim to diagnose Parkinson's disease (PD), Amyotrophic lateral sclerosis disease (AD), and Huntington's disease (HD) from a group containing NDDs and healthy control subjects. We also examined the impact of disease-specific identified features derived from VGRF signals. Detrended Fluctuation Analysis (DFA), Dynamic Time Warping (DTW) and Autocorrelation (AC) were used for feature extraction on Vertical Ground Reaction Force (VGRF) signals. To compare the performance of the features, we employed Support Vector Machines, K-Nearest Neighbors, and Neural Networks as classifiers. In three-class problem addressing the classification of AD, PD and HD 93.3% accuracy rate was achieved, while in the four classes case, in which NDDs and HC groups were considered together, 93.5% accuracy rate was yielded. Considering the disease-specific impact of features, it is revealed that while DFA based features diagnose patients with AD with the highest accuracy, DTW has been shown to be more successful in diagnosing PD. AC based features provided the highest accuracy in diagnosing HD. Although gait disorder is common for NDDs, each disease may have its own distinctive gait rhythms; therefore, it is important to identify disease-specific patterns and parameters for the diagnosis of each disease. To increase the diagnostic accuracy, it is necessary to use a combination of features, which were effective for each disease diagnosis. Determining a limited number of disease-specific features would provide NDD diagnostic systems suitable to be deployed in edge-computing environments.
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Affiliation(s)
- Ismihan Gul Ozeloglu
- Gazi University, Graduate School of Natural and Applied Sciences, Electrical and Electronics Engineering, Ankara, Turkey.
| | - Eda Akman Aydin
- Gazi University, Faculty of Technology, Electrical and Electronics Engineering, Ankara, Turkey.
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Torghabeh FA, Moghadam EA, Hosseini SA. Simultaneous time-frequency analysis of gait signals of both legs in classifying neurodegenerative diseases. Gait Posture 2024; 113:443-451. [PMID: 39111227 DOI: 10.1016/j.gaitpost.2024.07.302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Revised: 05/31/2024] [Accepted: 07/28/2024] [Indexed: 09/09/2024]
Abstract
BACKGROUND Neurodegenerative diseases (NDDs) pose significant challenges due to their debilitating nature and limited therapeutic options. Accurate and timely diagnosis is crucial for optimizing patient care and treatment strategies. Gait analysis, utilizing wearable sensors, has shown promise in assessing motor abnormalities associated with NDDs. RESEARCH QUESTION Research Question 1 To what extent can analyzing the interaction of both limbs in the time-frequency domain serve as a suitable methodology for accurately classifying NDDs? Research Question 2 How effective is the utilization of color-coded images, in conjunction with deep transfer learning models, for the classification of NDDs? METHODS GaitNDD database was used, comprising recordings from patients with Huntington's disease, amyotrophic lateral sclerosis, Parkinson's disease, and healthy controls. The gait signals underwent signal preparation, wavelet coherence analysis, and principal component analysis for feature enhancement. Deep transfer learning models (AlexNet, GoogLeNet, SqueezeNet) were employed for classification. Performance metrics, including accuracy, sensitivity, specificity, precision, and F1 score, were evaluated using 5-fold cross-validation. RESULTS The classification performance of the models varied depending on the time window used. For 5-second gait signal segments, AlexNet achieved an accuracy of 95.91 %, while GoogLeNet and SqueezeNet achieved accuracies of 96.49 % and 92.73 %, respectively. For 10-second segments, AlexNet outperformed other models with an accuracy of 99.20 %, while GoogLeNet and SqueezeNet achieved accuracies of 96.75 % and 95.00 %, respectively. Statistical tests confirmed the significance of the extracted features, indicating their discriminative power for classification. SIGNIFICANCE The proposed method demonstrated superior performance compared to previous studies, offering a non-invasive and cost-effective approach for the automated diagnosis of NDDs. By analyzing the interaction between both legs during walking using wavelet coherence, and utilizing deep transfer learning models, accurate classification of NDDs was achieved.
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Affiliation(s)
| | - Elham Ahmadi Moghadam
- Department of Biomedical Engineering, Mashhad Branch, Islamic Azad University, Mashhad, Iran
| | - Seyyed Abed Hosseini
- Department of Electrical Engineering, Mashhad Branch, Islamic Azad University, Mashhad, Iran.
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Sarmah A, Boruah L, Ito S, Kanagaraj S. Integrative approach to pedobarography and pelvis-trunk motion for knee osteoarthritis detection and exploration of non-radiographic rehabilitation monitoring. Front Bioeng Biotechnol 2024; 12:1401153. [PMID: 39144481 PMCID: PMC11321954 DOI: 10.3389/fbioe.2024.1401153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Accepted: 07/01/2024] [Indexed: 08/16/2024] Open
Abstract
Background Osteoarthritis (OA) is a highly prevalent global musculoskeletal disorder, and knee OA (KOA) accounts for four-fifths of the cases worldwide. It is a degenerative disorder that greatly affects the quality of life. Thus, it is managed through different methods, such as weight loss, physical therapy, and knee arthroplasty. Physical therapy aims to strengthen the knee periarticular muscles to improve joint stability. Methods Pedobarographic data and pelvis and trunk motion of 56 adults are recorded. Among them, 28 subjects were healthy, and 28 subjects were suffering from varying degrees of KOA. Age, sex, BMI, and the recorded variables are used together to identify subjects with KOA using machine learning (ML) models, namely, logistic regression, SVM, decision tree, and random forest. Surface electromyography (sEMG) signals are also recorded bilaterally from two muscles, the rectus femoris and biceps femoris caput longus, bilaterally during various activities for two healthy and six KOA subjects. Cluster analysis is then performed using the principal components obtained from time-series features, frequency features, and time-frequency features. Results KOA is successfully identified using the pedobarographic data and the pelvis and trunk motion with the highest accuracy and sensitivity of 89.3% and 85.7%, respectively, using a decision tree classifier. In addition, sEMG data have been successfully used to cluster healthy subjects from KOA subjects, with wavelet analysis features providing the best performance for the standing activity under different conditions. Conclusion KOA is detected using gait variables not directly related to the knee, such as pedobarographic measurements and pelvis and trunk motion captured by pedobarography mats and wearable sensors, respectively. KOA subjects are also distinguished from healthy individuals through clustering analysis using sEMG data from knee periarticular muscles during walking and standing. Gait data and sEMG complement each other, aiding in KOA identification and rehabilitation monitoring. It is important because wearable sensors simplify data collection, require minimal sample preparation, and offer a non-radiographic, safe method suitable for both laboratory and real-world scenarios. The decision tree classifier, trained with stratified k-fold cross validation (SKCV) data, is observed to be the best for KOA identification using gait data.
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Affiliation(s)
- Arnab Sarmah
- Department of Mechanical Engineering, Indian Institute of Technology Guwahati, Guwahati, India
- Graduate School of Engineering, Gifu University, Gifu, Japan
| | - Lipika Boruah
- Center for Intelligent Cyber Physical Systems, Indian Institute of Technology Guwahati, Guwahati, India
| | - Satoshi Ito
- Faculty of Engineering, Gifu University, Gifu, Japan
| | - Subramani Kanagaraj
- Department of Mechanical Engineering, Indian Institute of Technology Guwahati, Guwahati, India
- Center for Intelligent Cyber Physical Systems, Indian Institute of Technology Guwahati, Guwahati, India
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Zhao H, Xie J, Chen Y, Cao J, Liao WH, Cao H. Diagnosis of neurodegenerative diseases with a refined Lempel-Ziv complexity. Cogn Neurodyn 2024; 18:1153-1166. [PMID: 38826647 PMCID: PMC11143150 DOI: 10.1007/s11571-023-09973-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2022] [Revised: 04/03/2023] [Accepted: 04/19/2023] [Indexed: 06/04/2024] Open
Abstract
The investigation into the distinctive difference of gait is of significance for the clinical diagnosis of neurodegenerative diseases. However, human gait is affected by many factors like behavior, occupation and so on, and they may confuse the gait differences among Parkinson's disease, amyotrophic lateral sclerosis, and Huntington's disease. For the purpose of examining distinctive gait differences of neurodegenerative diseases, this study extracts various features from both vertical ground reaction force and time intervals. Moreover, refined Lempel-Ziv complexity is proposed considering the detailed distribution of signals based on the median and quartiles. Basic features (mean, coefficient of variance, and the asymmetry index), nonlinear dynamic features (Hurst exponent, correlation dimension, largest Lyapunov exponent), and refined Lempel-Ziv complexity of different neurodegenerative diseases are compared statistically by violin plot and Kruskal-Wallis test to reveal distinction and regularities. The comparative analysis results illustrate the gait differences across these neurodegenerative diseases by basic features and nonlinear dynamic features. Classification results by random forest indicate that the refined Lempel-Ziv complexity can robustly enhance the diagnosis accuracy when combined with basic features.
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Affiliation(s)
- Huan Zhao
- Key Laboratory of Education Ministry for Modern Design and Rotor Bearing System, Xi’an Jiaotong University, 28 Xianning West Road, 710049 Xi’an, China
| | - Junxiao Xie
- Key Laboratory of Education Ministry for Modern Design and Rotor Bearing System, Xi’an Jiaotong University, 28 Xianning West Road, 710049 Xi’an, China
| | - Yangquan Chen
- School of Engineering, University of California at Merced, Merced, CA 95343 USA
| | - Junyi Cao
- Key Laboratory of Education Ministry for Modern Design and Rotor Bearing System, Xi’an Jiaotong University, 28 Xianning West Road, 710049 Xi’an, China
| | - Wei-Hsin Liao
- Department of Mechanical and Automation Engineering, The Chinese University of Hong Kong, Shatin, N.T., 999077 Hong Kong, China
| | - Hongmei Cao
- Department of Neurology, First Affiliated Hospital of Xi’an Jiaotong University, 277 West Yanta Road, 710061 Xi’an, China
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Tobar Montilla CD, Rengifo Rodas CF, Muñoz Añasco M. Petri net transition times as training features for multiclass models to support the detection of neurodegenerative diseases. Biomed Phys Eng Express 2022; 8. [PMID: 36007476 DOI: 10.1088/2057-1976/ac8c9a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Accepted: 08/25/2022] [Indexed: 11/12/2022]
Abstract
This paper proposes the transition times of Petri net models of human gait as training features for multiclass random forests (RFs) and classification trees (CTs). These models are designed to support screening for neurodegenerative diseases. The proposed Petri net describes gait in terms of nine cyclic phases and the timing of the nine events that mark the transition between phases. Since the transition times between strides vary, each is represented as a random variable characterized by its mean and standard deviation. These transition times are calculated using the PhysioNet database of vertical ground reaction forces (VGRFs) generated by feet-ground contact. This database comprises the VGRFs of four groups: amyotrophic lateral sclerosis, the control group, Huntington's disease, and Parkinson disease. The RF produced an overall classification accuracy of 91%, and the specificities and sensitivities for each class were between 80% and 100%. However, despite this high performance, the RF-generated models demonstrated lack of interpretability prompted the training of a CT using identical features. The obtained tree comprised only four features and required a maximum of three comparisons. However, this simplification dramatically reduced the overall accuracy from 90.6% to 62.3%. The proposed set features were compared with those included in PhysioNet database of VGRFs. In terms of both the RF and CT, more accurate models were established using our features than those of the PhysioNet.
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Affiliation(s)
| | - Carlos Felipe Rengifo Rodas
- Electronics, Instrumentation and Control, Universidad del Cauca, Calle 5 No. 4-70, Sector Tulcan, Oficina 430, Popayan, Popayan, Departamento del Cauca, 190001, COLOMBIA
| | - Mariela Muñoz Añasco
- Universidad del Cauca, Calle 5 No 4 - 70 Sector Tulcan, Oficina 430, Popayan, Popayan, 190001, COLOMBIA
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Fuentes-Ramos M, Sánchez-DelaCruz E, Meza-Ruiz IV, Loeza-Mejía CI. Neurodegenerative diseases categorization by applying the automatic model selection and hyperparameter optimization method. JOURNAL OF INTELLIGENT & FUZZY SYSTEMS 2022. [DOI: 10.3233/jifs-219263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Neurodegenerative diseases affect a large part of the population in the world and also in Mexico, deteriorating gradually the quality of patients’ life. Therefore, it is important to diagnose them with a high degree of reliability. In order to solve it, various computational methods have been applied in the analysis of biomarkers of human gait. In this study, we propose employing the automatic model selection and hyperparameter optimization method that has not been addressed before for this problem. Our results showed highly competitive percentages of correctly classified instances when discriminating binary and multiclass sets of neurodegenerative diseases: Parkinson’s disease, Huntington’s disease, and Spinocerebellar ataxias.
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Saljuqi M, Ghaderyan P. A novel method based on matching pursuit decomposition of gait signals for Parkinson's disease, Amyotrophic lateral sclerosis and Huntington's disease detection. Neurosci Lett 2021; 761:136107. [PMID: 34256106 DOI: 10.1016/j.neulet.2021.136107] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2020] [Revised: 06/20/2021] [Accepted: 07/07/2021] [Indexed: 10/20/2022]
Abstract
BACKGROUND AND OBJECTIVE An accurate detection of neurodegenerative diseases (NDDs) definitely improves the life of patients and has attracted growing attention. METHODS In this paper, a general automatic method for detection of Parkinson's disease (PD), Amyotrophic lateral sclerosis (ALS) and Huntington's disease (HD) has been proposed based on the localized time-frequency information of gait signals. The new main part of the detection method is to obtain a small set of sparse coefficients for the local representation of gait signals with appropriate time and frequency resolution. For this purpose, a hybrid feature set based on sparse matching pursuit decomposition and two sets of nonlinear and linear features has been developed. Then, principal components of the proposed feature have been analyzed using a sparse coding classifier. Results The proposed approach has achieved high average accuracy rates of 93%, 94%, and 97% for PD, ALS, and HD detection, respectively. CONCLUSIONS The obtained results have indicated that combination of time and frequency information of the gait signals through adaptive localized window length in MP makes it more efficient in comparison with the existing time, frequency or other time-frequency gait parameters. The great potential of nonlinear sparse features for PD and HD detection and linear ones for ALS detection has also been shown.
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Affiliation(s)
- Masume Saljuqi
- Faculty of Biomedical Engineering, Sahand University of Technology, Tabriz, Iran
| | - Peyvand Ghaderyan
- Computational Neuroscience Laboratory, Faculty of Biomedical Engineering, Sahand University of Technology, Tabriz, Iran.
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Setiawan F, Lin CW. Identification of Neurodegenerative Diseases Based on Vertical Ground Reaction Force Classification Using Time-Frequency Spectrogram and Deep Learning Neural Network Features. Brain Sci 2021; 11:902. [PMID: 34356136 PMCID: PMC8303978 DOI: 10.3390/brainsci11070902] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Revised: 07/01/2021] [Accepted: 07/05/2021] [Indexed: 12/13/2022] Open
Abstract
A novel identification algorithm using a deep learning approach was developed in this study to classify neurodegenerative diseases (NDDs) based on the vertical ground reaction force (vGRF) signal. The irregularity of NDD vGRF signals caused by gait abnormalities can indicate different force pattern variations compared to a healthy control (HC). The main purpose of this research is to help physicians in the early detection of NDDs, efficient treatment planning, and monitoring of disease progression. The detection algorithm comprises a preprocessing process, a feature transformation process, and a classification process. In the preprocessing process, the five-minute vertical ground reaction force signal was divided into 10, 30, and 60 s successive time windows. In the feature transformation process, the time-domain vGRF signal was modified into a time-frequency spectrogram using a continuous wavelet transform (CWT). Then, feature enhancement with principal component analysis (PCA) was utilized. Finally, a convolutional neural network, as a deep learning classifier, was employed in the classification process of the proposed detection algorithm and evaluated using leave-one-out cross-validation (LOOCV) and k-fold cross-validation (k-fold CV, k = 5). The proposed detection algorithm can effectively differentiate gait patterns based on a time-frequency spectrogram of a vGRF signal between HC subjects and patients with neurodegenerative diseases.
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Affiliation(s)
- Febryan Setiawan
- Department of Biomedical Engineering, College of Engineering, National Cheng Kung University, Tainan 701, Taiwan;
| | - Che-Wei Lin
- Department of Biomedical Engineering, College of Engineering, National Cheng Kung University, Tainan 701, Taiwan;
- Medical Device Innovation Center, National Cheng Kung University, Tainan 701, Taiwan
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Fernandes F, Barbalho I, Barros D, Valentim R, Teixeira C, Henriques J, Gil P, Dourado Júnior M. Biomedical signals and machine learning in amyotrophic lateral sclerosis: a systematic review. Biomed Eng Online 2021; 20:61. [PMID: 34130692 PMCID: PMC8207575 DOI: 10.1186/s12938-021-00896-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Accepted: 06/09/2021] [Indexed: 12/11/2022] Open
Abstract
INTRODUCTION The use of machine learning (ML) techniques in healthcare encompasses an emerging concept that envisages vast contributions to the tackling of rare diseases. In this scenario, amyotrophic lateral sclerosis (ALS) involves complexities that are yet not demystified. In ALS, the biomedical signals present themselves as potential biomarkers that, when used in tandem with smart algorithms, can be useful to applications within the context of the disease. METHODS This Systematic Literature Review (SLR) consists of searching for and investigating primary studies that use ML techniques and biomedical signals related to ALS. Following the definition and execution of the SLR protocol, 18 articles met the inclusion, exclusion, and quality assessment criteria, and answered the SLR research questions. DISCUSSIONS Based on the results, we identified three classes of ML applications combined with biomedical signals in the context of ALS: diagnosis (72.22%), communication (22.22%), and survival prediction (5.56%). CONCLUSIONS Distinct algorithmic models and biomedical signals have been reported and present promising approaches, regardless of their classes. In summary, this SLR provides an overview of the primary studies analyzed as well as directions for the construction and evolution of technology-based research within the scope of ALS.
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Affiliation(s)
- Felipe Fernandes
- Laboratory of Technological Innovation in Health (LAIS), Federal University of Rio Grande do Norte (UFRN), Natal, RN Brazil
| | - Ingridy Barbalho
- Laboratory of Technological Innovation in Health (LAIS), Federal University of Rio Grande do Norte (UFRN), Natal, RN Brazil
| | - Daniele Barros
- Laboratory of Technological Innovation in Health (LAIS), Federal University of Rio Grande do Norte (UFRN), Natal, RN Brazil
| | - Ricardo Valentim
- Laboratory of Technological Innovation in Health (LAIS), Federal University of Rio Grande do Norte (UFRN), Natal, RN Brazil
| | - César Teixeira
- Department of Informatics Engineering, Univ Coimbra, CISUC-Center for Informatics and Systems of the University of Coimbra, Coimbra, Portugal
| | - Jorge Henriques
- Department of Informatics Engineering, Univ Coimbra, CISUC-Center for Informatics and Systems of the University of Coimbra, Coimbra, Portugal
| | - Paulo Gil
- Department of Informatics Engineering, Univ Coimbra, CISUC-Center for Informatics and Systems of the University of Coimbra, Coimbra, Portugal
| | - Mário Dourado Júnior
- Laboratory of Technological Innovation in Health (LAIS), Federal University of Rio Grande do Norte (UFRN), Natal, RN Brazil
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Fraiwan L, Hassanin O. Computer-aided identification of degenerative neuromuscular diseases based on gait dynamics and ensemble decision tree classifiers. PLoS One 2021; 16:e0252380. [PMID: 34086723 PMCID: PMC8177554 DOI: 10.1371/journal.pone.0252380] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2021] [Accepted: 05/15/2021] [Indexed: 11/18/2022] Open
Abstract
This study proposes a reliable computer-aided framework to identify gait fluctuations associated with a wide range of degenerative neuromuscular disease (DNDs) and health conditions. Investigated DNDs included amyotrophic lateral sclerosis (ALS), Parkinson's disease (PD), and Huntington's disease (HD). We further performed a statistical and classification comparison elucidating the discriminative capability of different gait signals, including vertical ground reaction force (VGRF), stride duration, stance duration, and swing duration. Feature representation of these gait signals was based on statistical amplitude quantification using the root mean square (RMS), variance, kurtosis, and skewness metrics. We investigated various decision tree (DT) based ensemble methods such as bagging, adaptive boosting (AdaBoost), random under-sampling boosting (RUSBoost), and random subspace to tackle the challenge of multi-class classification. Experimental results showed that AdaBoost ensembling provided a 6.49%, 0.78%, 2.31%, and 2.72% prediction rate improvement for the VGRF, stride, stance, and swing signals, respectively. The proposed approach achieved the highest classification accuracy of 99.17%, sensitivity of 98.23%, and specificity of 99.43%, using the VGRF-based features and the adaptive boosting classification model. This work demonstrates the effective capability of using simple gait fluctuation analysis and machine learning approaches to detect DNDs. Computer-aided analysis of gait fluctuations provides a promising advent to enhance clinical diagnosis of DNDs.
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Affiliation(s)
- Luay Fraiwan
- Department of Electrical and Computer Engineering, Abu Dhabi University, Abu Dhabi, UAE
- Department of Biomedical Engineering, Jordan University of Science and Technology, Irbid, Jordan
| | - Omnia Hassanin
- Department of Electrical and Computer Engineering, Abu Dhabi University, Abu Dhabi, UAE
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Huerta-Rosales JR, Granados-Lieberman D, Garcia-Perez A, Camarena-Martinez D, Amezquita-Sanchez JP, Valtierra-Rodriguez M. Short-Circuited Turn Fault Diagnosis in Transformers by Using Vibration Signals, Statistical Time Features, and Support Vector Machines on FPGA. SENSORS 2021; 21:s21113598. [PMID: 34064191 PMCID: PMC8196780 DOI: 10.3390/s21113598] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Revised: 05/14/2021] [Accepted: 05/17/2021] [Indexed: 12/02/2022]
Abstract
One of the most critical devices in an electrical system is the transformer. It is continuously under different electrical and mechanical stresses that can produce failures in its components and other electrical network devices. The short-circuited turns (SCTs) are a common winding failure. This type of fault has been widely studied in literature employing the vibration signals produced in the transformer. Although promising results have been obtained, it is not a trivial task if different severity levels and a common high-level noise are considered. This paper presents a methodology based on statistical time features (STFs) and support vector machines (SVM) to diagnose a transformer under several SCTs conditions. As STFs, 19 indicators from the transformer vibration signals are computed; then, the most discriminant features are selected using the Fisher score analysis, and the linear discriminant analysis is used for dimension reduction. Finally, a support vector machine classifier is employed to carry out the diagnosis in an automatic way. Once the methodology has been developed, it is implemented on a field-programmable gate array (FPGA) to provide a system-on-a-chip solution. A modified transformer capable of emulating different SCTs severities is employed to validate and test the methodology and its FPGA implementation. Results demonstrate the effectiveness of the proposal for diagnosing the transformer condition as an accuracy of 96.82% is obtained.
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Affiliation(s)
- Jose R. Huerta-Rosales
- ENAP-Research Group, CA-Sistemas Dinámicos y Control, Laboratorio de Sistemas y Equipos Eléctricos (LaSEE), Facultad de Ingeniería, Universidad Autónoma de Querétaro (UAQ), Campus San Juan del Río, Río Moctezuma 249, Col. San Cayetano, San Juan del Río, CP 76807, Mexico; (J.R.H.-R.); (J.P.A.-S.)
| | - David Granados-Lieberman
- ENAP-Research Group, CA-Fuentes Alternas y Calidad de la Energía Eléctrica, Departamento de Ingeniería Electromecánica, Tecnológico Nacional de México, Instituto Tecnológico Superior de Irapuato (ITESI), Carr. Irapuato-Silao km 12.5, Colonia El Copal, Irapuato, Guanajuato, CP 36821, Mexico;
| | - Arturo Garcia-Perez
- ENAP-Research Group, División de Ingeniería, Universidad de Guanajuato, Campus Irapuato-Salamanca, Carretera Salamanca-Valle de Santiago km 3.5 + 1.8 km, Comunidad de Palo Blanco, Salamanca, Guanajuato, CP 36885, Mexico; (A.G.-P.); (D.C.-M.)
| | - David Camarena-Martinez
- ENAP-Research Group, División de Ingeniería, Universidad de Guanajuato, Campus Irapuato-Salamanca, Carretera Salamanca-Valle de Santiago km 3.5 + 1.8 km, Comunidad de Palo Blanco, Salamanca, Guanajuato, CP 36885, Mexico; (A.G.-P.); (D.C.-M.)
| | - Juan P. Amezquita-Sanchez
- ENAP-Research Group, CA-Sistemas Dinámicos y Control, Laboratorio de Sistemas y Equipos Eléctricos (LaSEE), Facultad de Ingeniería, Universidad Autónoma de Querétaro (UAQ), Campus San Juan del Río, Río Moctezuma 249, Col. San Cayetano, San Juan del Río, CP 76807, Mexico; (J.R.H.-R.); (J.P.A.-S.)
| | - Martin Valtierra-Rodriguez
- ENAP-Research Group, CA-Sistemas Dinámicos y Control, Laboratorio de Sistemas y Equipos Eléctricos (LaSEE), Facultad de Ingeniería, Universidad Autónoma de Querétaro (UAQ), Campus San Juan del Río, Río Moctezuma 249, Col. San Cayetano, San Juan del Río, CP 76807, Mexico; (J.R.H.-R.); (J.P.A.-S.)
- Correspondence:
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An Explainable Machine Learning Approach Based on Statistical Indexes and SVM for Stress Detection in Automobile Drivers Using Electromyographic Signals. SENSORS 2021; 21:s21093155. [PMID: 34062944 PMCID: PMC8125327 DOI: 10.3390/s21093155] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Revised: 04/28/2021] [Accepted: 04/28/2021] [Indexed: 11/29/2022]
Abstract
The economic and personal consequences that a car accident generates for society have been increasing in recent years. One of the causes that can generate a car accident is the stress level the driver has; consequently, the detection of stress events is a highly desirable task. In this article, the efficacy that statistical time features (STFs), such as root mean square, mean, variance, and standard deviation, among others, can reach in detecting stress events using electromyographical signals in drivers is investigated, since they can measure subtle changes that a signal can have. The obtained results show that the variance and standard deviation coupled with a support vector machine classifier with a cubic kernel are effective for detecting stress events where an AUC of 0.97 is reached. In this sense, since SVM has different kernels that can be trained, they are used to find out which one has the best efficacy using the STFs as feature inputs and a training strategy; thus, information about model explain ability can be determined. The explainability of the machine learning algorithm allows generating a deeper comprehension about the model efficacy and what model should be selected depending on the features used to its development.
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A computerized method to assess Parkinson’s disease severity from gait variability based on gender. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102497] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Jamin A, Abraham P, Humeau-Heurtier A. Machine learning for predictive data analytics in medicine: A review illustrated by cardiovascular and nuclear medicine examples. Clin Physiol Funct Imaging 2020; 41:113-127. [PMID: 33316137 DOI: 10.1111/cpf.12686] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Revised: 11/01/2020] [Accepted: 12/01/2020] [Indexed: 12/13/2022]
Abstract
The evidence-based medicine allows the physician to evaluate the risk-benefit ratio of a treatment through setting and data. Risk-based choices can be done by the doctor using different information. With the emergence of new technologies, a large amount of data is recorded offering interesting perspectives with machine learning for predictive data analytics. Machine learning is an ensemble of methods that process data to model a learning problem. Supervised machine learning algorithms consist in using annotated data to construct the model. This category allows to solve prediction data analytics problems. In this paper, we detail the use of supervised machine learning algorithms for predictive data analytics problems in medicine. In the medical field, data can be split into two categories: medical images and other data. For brevity, our review deals with any kind of medical data excluding images. In this article, we offer a discussion around four supervised machine learning approaches: information-based, similarity-based, probability-based and error-based approaches. Each method is illustrated with detailed cardiovascular and nuclear medicine examples. Our review shows that model ensemble (ME) and support vector machine (SVM) methods are the most popular. SVM, ME and artificial neural networks often lead to better results than those given by other algorithms. In the coming years, more studies, more data, more tools and more methods will, for sure, be proposed.
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Affiliation(s)
- Antoine Jamin
- COTTOS Médical, Avrillé, France.,LERIA-Laboratoire d'Etude et de Recherche en Informatique d'Angers, Univ. Angers, Angers, France.,LARIS-Laboratoire Angevin de Recherche en Ingénierie des Systèmes, Univ. Angers, Angers, France
| | - Pierre Abraham
- Sports Medicine Department, UMR Mitovasc CNRS 6015 INSERM 1228, Angers University Hospital, Angers, France
| | - Anne Humeau-Heurtier
- LARIS-Laboratoire Angevin de Recherche en Ingénierie des Systèmes, Univ. Angers, Angers, France
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15
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Wavelet Transform-Statistical Time Features-Based Methodology for Epileptic Seizure Prediction Using Electrocardiogram Signals. MATHEMATICS 2020. [DOI: 10.3390/math8122125] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Epilepsy is a brain disorder that affects about 50 million persons around the world and is characterized by generating recurrent seizures, which can put patients in permanent because of falls, drowning, burns, and prolonged seizures that they can suffer. Hence, it is of vital importance to propose a methodology with the capability of predicting a seizure with several minutes before the onset, allowing that the patients take their precautions against injuries. In this regard, a methodology based on the wavelet packet transform (WPT), statistical time features (STFs), and a decision tree classifier (DTC) for predicting an epileptic seizure using electrocardiogram (ECG) signals is presented. Seventeen STFs were analyzed to measure changes in the properties of ECG signals and find characteristics capable of differentiating between healthy and 15 min prior to seizure signals. The effectiveness of the proposed methodology for predicting an epileptic event is demonstrated using a database of seven patients with 10 epileptic seizures, which was provided by the Massachusetts Institute of Technology–Beth Israel Hospital (MIT–BIH). The results show that the proposed methodology is capable of predicting an epileptic seizure 15 min before with an accuracy of 100%. Our results suggest that the use of STFs at frequency bands related to heart activity to find parameters for the prediction of epileptic seizures is suitable.
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16
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Development of a Neurodegenerative Disease Gait Classification Algorithm Using Multiscale Sample Entropy and Machine Learning Classifiers. ENTROPY 2020; 22:e22121340. [PMID: 33266524 PMCID: PMC7759974 DOI: 10.3390/e22121340] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Revised: 11/16/2020] [Accepted: 11/16/2020] [Indexed: 12/13/2022]
Abstract
The prevalence of neurodegenerative diseases (NDD) has grown rapidly in recent years and NDD screening receives much attention. NDD could cause gait abnormalities so that to screen NDD using gait signal is feasible. The research aim of this study is to develop an NDD classification algorithm via gait force (GF) using multiscale sample entropy (MSE) and machine learning models. The Physionet NDD gait database is utilized to validate the proposed algorithm. In the preprocessing stage of the proposed algorithm, new signals were generated by taking one and two times of differential on GF and are divided into various time windows (10/20/30/60-sec). In feature extraction, the GF signal is used to calculate statistical and MSE values. Owing to the imbalanced nature of the Physionet NDD gait database, the synthetic minority oversampling technique (SMOTE) was used to rebalance data of each class. Support vector machine (SVM) and k-nearest neighbors (KNN) were used as the classifiers. The best classification accuracies for the healthy controls (HC) vs. Parkinson’s disease (PD), HC vs. Huntington’s disease (HD), HC vs. amyotrophic lateral sclerosis (ALS), PD vs. HD, PD vs. ALS, HD vs. ALS, HC vs. PD vs. HD vs. ALS, were 99.90%, 99.80%, 100%, 99.75%, 99.90%, 99.55%, and 99.68% under 10-sec time window with KNN. This study successfully developed an NDD gait classification based on MSE and machine learning classifiers.
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17
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Classification of gait signals into different neurodegenerative diseases using statistical analysis and recurrence quantification analysis. Pattern Recognit Lett 2020. [DOI: 10.1016/j.patrec.2018.05.006] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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18
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Evaluation of Vertical Ground Reaction Forces Pattern Visualization in Neurodegenerative Diseases Identification Using Deep Learning and Recurrence Plot Image Feature Extraction. SENSORS 2020; 20:s20143857. [PMID: 32664354 PMCID: PMC7412348 DOI: 10.3390/s20143857] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Revised: 07/06/2020] [Accepted: 07/09/2020] [Indexed: 12/13/2022]
Abstract
To diagnose neurodegenerative diseases (NDDs), physicians have been clinically evaluating symptoms. However, these symptoms are not very dependable—particularly in the early stages of the diseases. This study has therefore proposed a novel classification algorithm that uses a deep learning approach to classify NDDs based on the recurrence plot of gait vertical ground reaction force (vGRF) data. The irregular gait patterns of NDDs exhibited by vGRF data can indicate different variations of force patterns compared with healthy controls (HC). The classification algorithm in this study comprises three processes: a preprocessing, feature transformation and classification. In the preprocessing process, the 5-min vGRF data divided into 10-s successive time windows. In the feature transformation process, the time-domain vGRF data are modified into an image using a recurrence plot. The total recurrence plots are 1312 plots for HC (16 subjects), 1066 plots for ALS (13 patients), 1230 plots for PD (15 patients) and 1640 plots for HD (20 subjects). The principal component analysis (PCA) is used in this stage for feature enhancement. Lastly, the convolutional neural network (CNN), as a deep learning classifier, is employed in the classification process and evaluated using the leave-one-out cross-validation (LOOCV). Gait data from HC subjects and patients with amyotrophic lateral sclerosis (ALS), Huntington’s disease (HD) and Parkinson’s disease (PD) obtained from the PhysioNet Gait Dynamics in Neurodegenerative disease were used to validate the proposed algorithm. The experimental results included two-class and multiclass classifications. In the two-class classification, the results included classification of the NDD and the HC groups and classification among the NDDs. The classification accuracy for (HC vs. ALS), (HC vs. HD), (HC vs. PD), (ALS vs. PD), (ALS vs. HD), (PD vs. HD) and (NDDs vs. HC) were 100%, 98.41%, 100%, 95.95%, 100%, 97.25% and 98.91%, respectively. In the multiclass classification, a four-class gait classification among HC, ALS, PD and HD was conducted and the classification accuracy of HC, ALS, PD and HD were 98.99%, 98.32%, 97.41% and 96.74%, respectively. The proposed method can achieve high accuracy compare to the existing results, but with shorter length of input signal (Input of existing literature using the same database is 5-min gait signal, but the proposed method only needs 10-s gait signal).
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Ghaderyan P, Ghoreshi Beyrami SM. Neurodegenerative diseases detection using distance metrics and sparse coding: A new perspective on gait symmetric features. Comput Biol Med 2020; 120:103736. [DOI: 10.1016/j.compbiomed.2020.103736] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Revised: 03/26/2020] [Accepted: 03/26/2020] [Indexed: 12/12/2022]
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20
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Rehman RZU, Del Din S, Guan Y, Yarnall AJ, Shi JQ, Rochester L. Selecting Clinically Relevant Gait Characteristics for Classification of Early Parkinson's Disease: A Comprehensive Machine Learning Approach. Sci Rep 2019; 9:17269. [PMID: 31754175 PMCID: PMC6872822 DOI: 10.1038/s41598-019-53656-7] [Citation(s) in RCA: 59] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2019] [Accepted: 10/23/2019] [Indexed: 11/09/2022] Open
Abstract
Parkinson's disease (PD) is the second most common neurodegenerative disease; gait impairments are typical and are associated with increased fall risk and poor quality of life. Gait is potentially a useful biomarker to help discriminate PD at an early stage, however the optimal characteristics and combination are unclear. In this study, we used machine learning (ML) techniques to determine the optimal combination of gait characteristics to discriminate people with PD and healthy controls (HC). 303 participants (119 PD, 184 HC) walked continuously around a circuit for 2-minutes at a self-paced walk. Gait was quantified using an instrumented mat (GAITRite) from which 16 gait characteristics were derived and assessed. Gait characteristics were selected using different ML approaches to determine the optimal method (random forest with information gain and recursive features elimination (RFE) technique with support vector machine (SVM) and logistic regression). Five clinical gait characteristics were identified with RFE-SVM (mean step velocity, mean step length, step length variability, mean step width, and step width variability) that accurately classified PD. Model accuracy for classification of early PD ranged between 73-97% with 63-100% sensitivity and 79-94% specificity. In conclusion, we identified a subset of gait characteristics for accurate early classification of PD. These findings pave the way for a better understanding of the utility of ML techniques to support informed clinical decision-making.
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Affiliation(s)
- Rana Zia Ur Rehman
- Institute of Neuroscience/Institute for Ageing, Newcastle University, Newcastle Upon Tyne, NE4 5PL, UK
| | - Silvia Del Din
- Institute of Neuroscience/Institute for Ageing, Newcastle University, Newcastle Upon Tyne, NE4 5PL, UK
| | - Yu Guan
- School of Computing, Newcastle University, Newcastle Upon Tyne, NE4 5TG, UK
| | - Alison J Yarnall
- Institute of Neuroscience/Institute for Ageing, Newcastle University, Newcastle Upon Tyne, NE4 5PL, UK
- The Newcastle Upon Tyne Hospitals NHS Foundation Trust, Newcastle Upon Tyne, NE7 7DN, UK
| | - Jian Qing Shi
- School of Mathematics, Statistics, and Physics, Newcastle University, Newcastle Upon Tyne, NE1 7RU, UK
| | - Lynn Rochester
- Institute of Neuroscience/Institute for Ageing, Newcastle University, Newcastle Upon Tyne, NE4 5PL, UK.
- The Newcastle Upon Tyne Hospitals NHS Foundation Trust, Newcastle Upon Tyne, NE7 7DN, UK.
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21
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Detection of Parkinson’s disease based on voice patterns ranking and optimized support vector machine. Biomed Signal Process Control 2019. [DOI: 10.1016/j.bspc.2018.08.029] [Citation(s) in RCA: 56] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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22
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Classification of gait patterns between patients with Parkinson's disease and healthy controls using phase space reconstruction (PSR), empirical mode decomposition (EMD) and neural networks. Neural Netw 2019; 111:64-76. [PMID: 30690285 DOI: 10.1016/j.neunet.2018.12.012] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Revised: 12/25/2018] [Accepted: 12/28/2018] [Indexed: 12/15/2022]
Abstract
Parkinson's disease (PD) is a common neurodegenerative disorder that affects human's quality of life, especially leading to locomotor deficits such as postural instability and gait disturbances. Gait signal is one of the best features to characterize and detect movement disorders caused by a malfunction in parts of the brain and nervous system of the patients with PD. Various classification approaches using spatiotemporal gait variables have been presented earlier to classify Parkinson's gait. In this study we propose a novel method for gait pattern classification between patients with PD and healthy controls, based upon phase space reconstruction (PSR), empirical mode decomposition (EMD) and neural networks. First, vertical ground reaction forces (GRFs) at specific positions of human feet are captured and then phase space is reconstructed. The properties associated with the gait system dynamics are preserved in the reconstructed phase space. Three-dimensional (3D) PSR together with Euclidean distance (ED) has been used. These measured parameters demonstrate significant difference in gait dynamics between the two groups and have been utilized to form a reference variable set. Second, reference variables are decomposed into Intrinsic Mode Functions (IMFs) using EMD, and the third IMFs are extracted and served as gait features. Third, neural networks are then used as the classifier to distinguish between patients with PD and healthy controls based on the difference of gait dynamics preserved in the gait features between the two groups. Finally, experiments are carried out on 93 PD patients and 73 healthy subjects to assess the effectiveness of the proposed method. By using 2-fold, 10-fold and leave-one-out cross-validation styles, the correct classification rates are reported to be 91.46%, 96.99% and 98.80%, respectively. Compared with other state-of-the-art methods, the results demonstrate superior performance and the proposed method can serve as a potential candidate for the automatic and non-invasive classification between patients with PD and healthy subjects.
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23
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Abstract
This paper focuses on detecting freezing of gait in Parkinson’s patients using body-worn accelerometers. In this study, we analyzed the robustness of four feature sets, two of which are new features adapted from speech processing: mel frequency cepstral coefficients and quality assessment metrics. For classification based on these features, we compared random forest, multilayer perceptron, hidden Markov models, and deep neural networks. These algorithms were evaluated using a leave-one-subject-out (LOSO) cross validation to match the situation where a system is being constructed for patients for whom there is no training data. This evaluation was performed using the Daphnet dataset, which includes recordings from ten patients using three accelerometers situated on the ankle, knee, and lower back. We obtained a reduction from 17.3% to 12.5% of the equal error rate compared to the previous best results using this dataset and LOSO testing. For high levels of sensitivity (such as 0.95), the specificity increased from 0.63 to 0.75. The biggest improvement across all of the feature sets and algorithms tested in this study was obtained by integrating information from longer periods of time in a deep neural network with convolutional layers.
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24
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Rule based classification of neurodegenerative diseases using data driven gait features. HEALTH AND TECHNOLOGY 2018. [DOI: 10.1007/s12553-018-0274-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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25
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Ye Q, Xia Y, Yao Z. Classification of Gait Patterns in Patients with Neurodegenerative Disease Using Adaptive Neuro-Fuzzy Inference System. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2018; 2018:9831252. [PMID: 30363986 PMCID: PMC6186329 DOI: 10.1155/2018/9831252] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/14/2018] [Revised: 08/26/2018] [Accepted: 08/29/2018] [Indexed: 12/14/2022]
Abstract
A common feature that is typical of the patients with neurodegenerative (ND) disease is the impairment of motor function, which can interrupt the pathway from cerebrum to the muscle and thus cause movement disorders. For patients with amyotrophic lateral sclerosis disease (ALS), the impairment is caused by the loss of motor neurons. While for patients with Parkinson's disease (PD) and Huntington's disease (HD), it is related to the basal ganglia dysfunction. Previously studies have demonstrated the usage of gait analysis in characterizing the ND patients for the purpose of disease management. However, most studies focus on extracting characteristic features that can differentiate ND gait from normal gait. Few studies have demonstrated the feasibility of modelling the nonlinear gait dynamics in characterizing the ND gait. Therefore, in this study, a novel approach based on an adaptive neuro-fuzzy inference system (ANFIS) is presented for identification of the gait of patients with ND disease. The proposed ANFIS model combines neural network adaptive capabilities and the fuzzy logic qualitative approach. Gait dynamics such as stride intervals, stance intervals, and double support intervals were used as the input variables to the model. The particle swarm optimization (PSO) algorithm was utilized to learn the parameters of the ANFIS model. The performance of the system was evaluated in terms of sensitivity, specificity, and accuracy using the leave-one-out cross-validation method. The competitive classification results on a dataset of 13 ALS patients, 15 PD patients, 20 HD patients, and 16 healthy control subjects indicated the effectiveness of our approach in representing the gait characteristics of ND patients.
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Affiliation(s)
- Qiang Ye
- Department of Sport and Health Science, Nanjing Sport Institute, Nanjing 210014, China
| | - Yi Xia
- School of Electrical Engineering and Automation, Anhui University, Hefei 230601, China
| | - Zhiming Yao
- Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei 230031, China
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26
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Liu W, Zhang C, Ma H, Li S. Learning Efficient Spatial-Temporal Gait Features with Deep Learning for Human Identification. Neuroinformatics 2018; 16:457-471. [PMID: 29404933 DOI: 10.1007/s12021-018-9362-4] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
The integration of the latest breakthroughs in bioinformatics technology from one side and artificial intelligence from another side, enables remarkable advances in the fields of intelligent security guard computational biology, healthcare, and so on. Among them, biometrics based automatic human identification is one of the most fundamental and significant research topic. Human gait, which is a biometric features with the unique capability, has gained significant attentions as the remarkable characteristics of remote accessed, robust and security in the biometrics based human identification. However, the existed methods cannot well handle the indistinctive inter-class differences and large intra-class variations of human gait in real-world situation. In this paper, we have developed an efficient spatial-temporal gait features with deep learning for human identification. First of all, we proposed a gait energy image (GEI) based Siamese neural network to automatically extract robust and discriminative spatial gait features for human identification. Furthermore, we exploit the deep 3-dimensional convolutional networks to learn the human gait convolutional 3D (C3D) as the temporal gait features. Finally, the GEI and C3D gait features are embedded into the null space by the Null Foley-Sammon Transform (NFST). In the new space, the spatial-temporal features are sufficiently combined with distance metric learning to drive the similarity metric to be small for pairs of gait from the same person, and large for pairs from different persons. Consequently, the experiments on the world's largest gait database show our framework impressively outperforms state-of-the-art methods.
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Affiliation(s)
- Wu Liu
- Beijing Key Laboratory of Intelligent Telecommunication Software and Multimedia, Beijing University of Posts and Telecommunications, Beijing, 100876, China.
| | - Cheng Zhang
- Department of Computer Science and Engineering, The Ohio State University, Columbus, OH, 43210, USA
| | - Huadong Ma
- Beijing Key Laboratory of Intelligent Telecommunication Software and Multimedia, Beijing University of Posts and Telecommunications, Beijing, 100876, China
| | - Shuangqun Li
- Beijing Key Laboratory of Intelligent Telecommunication Software and Multimedia, Beijing University of Posts and Telecommunications, Beijing, 100876, China
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27
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Bilgin S. The impact of feature extraction for the classification of amyotrophic lateral sclerosis among neurodegenerative diseases and healthy subjects. Biomed Signal Process Control 2017. [DOI: 10.1016/j.bspc.2016.08.016] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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28
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Wu Y, Chen P, Luo X, Wu M, Liao L, Yang S, Rangayyan RM. Measuring signal fluctuations in gait rhythm time series of patients with Parkinson's disease using entropy parameters. Biomed Signal Process Control 2017. [DOI: 10.1016/j.bspc.2016.08.022] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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29
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Behnam M, Pourghassem H. Real-time seizure prediction using RLS filtering and interpolated histogram feature based on hybrid optimization algorithm of Bayesian classifier and Hunting search. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2016; 132:115-136. [PMID: 27282233 DOI: 10.1016/j.cmpb.2016.04.014] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2015] [Revised: 04/07/2016] [Accepted: 04/08/2016] [Indexed: 06/06/2023]
Abstract
BACKGROUND AND OBJECTIVES Epileptic seizure prediction using EEG signal analysis is an important application for drug therapy and pediatric patient monitoring. Time series estimation to obtain the future samples of EEG signal has vital role for detecting seizure attack. In this paper, a novel density-based real-time seizure prediction algorithm based on a trained offline seizure detection algorithm is proposed. METHODS In the offline seizure detection procedure, after signal preprocessing, histogram-based statistical features are extracted from signal probability distribution. By defining a deterministic polynomial model on the normalized histogram, a novel syntactic feature that is named Interpolated Histogram Feature (IHF) is proposed. Moreover, with this feature, Seizure Distribution Model (SDM) as a descriptor of the seizure and non-seizure signals is presented. By using a novel hybrid optimization algorithm based on Bayesian classifier and Hunting Search (HuS) algorithm, the optimal features are selected. To detect the seizure attacks in the online mode, a Multi-Layer Perceptron (MLP) classifier is trained with the optimal features in the offline procedure. For online prediction, the enhanced Recursive Least Square (RLS) filter is applied to estimate sample-by-sample of the EEG signal. Also, a density-based signal tracking scenario is introduced to update and tune the parameters of RLS filtering algorithm. RESULTS Our prediction algorithm is evaluated on 104 hours of EEG signals recorded from 23 pediatric patients. Our online signal prediction algorithm provides the accuracy rate of 86.56% and precision rate of 86.53% simultaneously using the trained MLP classifier from the offline mode. The recall rate of seizure prediction is 97.27% and the false prediction rate of 0.00215 per hour is achieved as well. Ultimately, the future samples of EEG signal are estimated, and the time of seizure signal prediction is also converged to 6.64 seconds. CONCLUSION In our proposed real-time algorithm, by implementing a density-based signal tracking scenario, the future samples of signal with suitable time is predicted and the seizure is detected based on the optimal features from the IHF and histogram-based statistical features with acceptable performance.
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Affiliation(s)
- Morteza Behnam
- Department of Electrical Engineering, Najafabad Branch, Islamic Azad University, Najafabad, Isfahan, Iran
| | - Hossein Pourghassem
- Department of Electrical Engineering, Najafabad Branch, Islamic Azad University, Najafabad, Isfahan, Iran.
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30
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A novel approach for analysis of altered gait variability in amyotrophic lateral sclerosis. Med Biol Eng Comput 2015; 54:1399-408. [DOI: 10.1007/s11517-015-1413-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2015] [Accepted: 10/19/2015] [Indexed: 11/26/2022]
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