1
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Chen G, Zou L, Ji Z. A review: Blood pressure monitoring based on PPG and circadian rhythm. APL Bioeng 2024; 8:031501. [PMID: 39049850 PMCID: PMC11268918 DOI: 10.1063/5.0206980] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Accepted: 06/26/2024] [Indexed: 07/27/2024] Open
Abstract
The demand for ambulatory blood pressure monitoring (ABPM) is increasing due to the global rise in cardiovascular disease patients. However, conventional ABPM methods are discontinuous and can disrupt daily activities and sleep patterns. Photoplethysmography (PPG) is gaining attention from researchers due to its simplicity, portability, affordability, and ease of signal acquisition. This paper critically examines the advancements achieved in the technology of PPG-guided noninvasive blood pressure (BP) monitoring and explores future opportunities. We have performed a literature search using the Web of Science and PubMed search engines, from January 2018 to October 2023, for PPG signal quality assessment (SQA), cuffless BP estimation using single PPG, and associations between circadian rhythm and BP. Based on this foundation, we first examine the impact of PPG signal quality on blood pressure estimation results while focusing on methods for assessing PPG signal quality. Subsequently, the methods documented for estimating cuff-free BP from PPG signals are summarized. Furthermore, the study examines how individual differences affect the accuracy of BP estimation, incorporating the factors that influence arterial blood pressure (ABP) and elucidating the impact of circadian rhythm on blood pressure. Finally, there will be a summary of the study's findings and suggestions for future research directions.
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Affiliation(s)
- Gang Chen
- College of Bioengineering, Chongqing University, Chongqing 400030, China
| | - Linglin Zou
- Department of oncology, Affiliated Hospital of Southwest Medical University, Luzhou 646000, China
| | - Zhong Ji
- Author to whom correspondence should be addressed:
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2
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Andrade I, Teixeira C, Pinto M. On the performance of seizure prediction machine learning methods across different databases: the sample and alarm-based perspectives. Front Neurosci 2024; 18:1417748. [PMID: 39077429 PMCID: PMC11284155 DOI: 10.3389/fnins.2024.1417748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Accepted: 06/25/2024] [Indexed: 07/31/2024] Open
Abstract
Epilepsy affects 1% of the global population, with approximately one-third of patients resistant to anti-seizure medications (ASMs), posing risks of physical injuries and psychological issues. Seizure prediction algorithms aim to enhance the quality of life for these individuals by providing timely alerts. This study presents a patient-specific seizure prediction algorithm applied to diverse databases (EPILEPSIAE, CHB-MIT, AES, and Epilepsy Ecosystem). The proposed algorithm undergoes a standardized framework, including data preprocessing, feature extraction, training, testing, and postprocessing. Various databases necessitate adaptations in the algorithm, considering differences in data availability and characteristics. The algorithm exhibited variable performance across databases, taking into account sensitivity, FPR/h, specificity, and AUC score. This study distinguishes between sample-based approaches, which often yield better results by disregarding the temporal aspect of seizures, and alarm-based approaches, which aim to simulate real-life conditions but produce less favorable outcomes. Statistical assessment reveals challenges in surpassing chance levels, emphasizing the rarity of seizure events. Comparative analyses with existing studies highlight the complexity of standardized assessments, given diverse methodologies and dataset variations. Rigorous methodologies aiming to simulate real-life conditions produce less favorable outcomes, emphasizing the importance of realistic assumptions and comprehensive, long-term, and systematically structured datasets for future research.
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Affiliation(s)
- Inês Andrade
- University of Coimbra, Centre for Informatics and Systems, Department of Informatics Engineering, Coimbra, Portugal
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3
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Tajadini B, Seydnejad SR, Rezakhani S. Short-term epileptic seizures prediction based on cepstrum analysis and signal morphology. BMC Biomed Eng 2024; 6:6. [PMID: 38946007 PMCID: PMC11215831 DOI: 10.1186/s42490-024-00081-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2023] [Accepted: 04/29/2024] [Indexed: 07/02/2024] Open
Abstract
This article aims to provide and implement a patient-specific seizure (for Intervention Time (IT) detection) prediction algorithm using non-invasive data to develop warning devices to prevent further patient injury and reduce stress. Employing algorithms with high initial data volume and computations time to increase the accuracy is an important problem in prediction issues. Consequently, reduction of calculations is met by applying only two effective EEG signal channels without manual removal of artifacts by visual inspection as the algorithm's input. Autoregression (AR) modeling and Cepstrum detect changes due to IT period. We carry out the goal of higher accuracy by increasing sensitivity to interictal epileptiform discharges or artifacts and reduce errors caused by them, taking advantage of the discrete wavelet transform and the comparison of two channels epochs by applying the median filter. Averaging and positive envelope methods are introduced to patient-specific thresholds become more differentiated as soon as possible and can be lead to sooner prediction. We examined this method on a mathematical model of adult epilepsy as well as on 10 patients with EEG data. The results of our experiments confirm that performance of the proposed approach in accuracy and average false prediction rate is superior to other algorithms. Simulation results have been shown the robustness of our proposed method to artifacts and errors, which is a step towards the development of real-time alarm devices by non-invasive techniques.
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Affiliation(s)
- Bahar Tajadini
- Department of Electrical Engineering, Shahid Bahonar University of Kerman, Kerman, Iran
| | - Saeid R Seydnejad
- Department of Electrical Engineering, Shahid Bahonar University of Kerman, Kerman, Iran.
| | - Soheila Rezakhani
- Department of Neurology, Neuroscience Research Center, School of Medicine, Kerman University of Medical Sciences, Kerman, Iran
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4
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Lopes F, Pinto MF, Dourado A, Schulze-Bonhage A, Dümpelmann M, Teixeira C. Addressing data limitations in seizure prediction through transfer learning. Sci Rep 2024; 14:14169. [PMID: 38898066 PMCID: PMC11187122 DOI: 10.1038/s41598-024-64802-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2024] [Accepted: 06/13/2024] [Indexed: 06/21/2024] Open
Abstract
According to the literature, seizure prediction models should be developed following a patient-specific approach. However, seizures are usually very rare events, meaning the number of events that may be used to optimise seizure prediction approaches is limited. To overcome such constraint, we analysed the possibility of using data from patients from an external database to improve patient-specific seizure prediction models. We present seizure prediction models trained using a transfer learning procedure. We trained a deep convolutional autoencoder using electroencephalogram data from 41 patients collected from the EPILEPSIAE database. Then, a bidirectional long short-term memory and a classifier layers were added on the top of the encoder part and were optimised for 24 patients from the Universitätsklinikum Freiburg individually. The encoder was used as a feature extraction module. Therefore, its weights were not changed during the patient-specific training. Experimental results showed that seizure prediction models optimised using pretrained weights present about four times fewer false alarms while maintaining the same ability to predict seizures and achieved more 13% validated patients. Therefore, results evidenced that the optimisation using transfer learning was more stable and faster, saving computational resources. In summary, adopting transfer learning for seizure prediction models represents a significant advancement. It addresses the data limitation seen in the seizure prediction field and offers more efficient and stable training, conserving computational resources. Additionally, despite the compact size, transfer learning allows to easily share data knowledge due to fewer ethical restrictions and lower storage requirements. The convolutional autoencoder developed in this study will be shared with the scientific community, promoting further research.
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Affiliation(s)
- Fábio Lopes
- Department of Informatics Engineering, Center for Informatics and Systems of the University of Coimbra, University of Coimbra, Coimbra, Portugal.
- Department Neurosurgery, Epilepsy Center, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
| | - Mauro F Pinto
- Department of Informatics Engineering, Center for Informatics and Systems of the University of Coimbra, University of Coimbra, Coimbra, Portugal
| | - António Dourado
- Department of Informatics Engineering, Center for Informatics and Systems of the University of Coimbra, University of Coimbra, Coimbra, Portugal
| | - Andreas Schulze-Bonhage
- Department Neurosurgery, Epilepsy Center, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Matthias Dümpelmann
- Department Neurosurgery, Epilepsy Center, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
- Department of Microsystems Engineering (IMTEK), University of Freiburg, Freiburg, Germany
| | - César Teixeira
- Department of Informatics Engineering, Center for Informatics and Systems of the University of Coimbra, University of Coimbra, Coimbra, Portugal
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5
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Li H, Liao J, Wang H, Zhan CA, Yang F. EEG power spectra parameterization and adaptive channel selection towards semi-supervised seizure prediction. Comput Biol Med 2024; 175:108510. [PMID: 38691913 DOI: 10.1016/j.compbiomed.2024.108510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 03/27/2024] [Accepted: 04/21/2024] [Indexed: 05/03/2024]
Abstract
BACKGROUND The seizure prediction algorithms have demonstrated their potential in mitigating epilepsy risks by detecting the pre-ictal state using ongoing electroencephalogram (EEG) signals. However, most of them require high-density EEG, which is burdensome to the patients for daily monitoring. Moreover, prevailing seizure models require extensive training with significant labeled data which is very time-consuming and demanding for the epileptologists. METHOD To address these challenges, here we propose an adaptive channel selection strategy and a semi-supervised deep learning model respectively to reduce the number of EEG channels and to limit the amount of labeled data required for accurate seizure prediction. Our channel selection module is centered on features from EEG power spectra parameterization that precisely characterize the epileptic activities to identify the seizure-associated channels for each patient. The semi-supervised model integrates generative adversarial networks and bidirectional long short-term memory networks to enhance seizure prediction. RESULTS Our approach is evaluated on the CHB-MIT and Siena epilepsy datasets. With utilizing only 4 channels, the method demonstrates outstanding performance with an AUC of 93.15% on the CHB-MIT dataset and an AUC of 88.98% on the Siena dataset. Experimental results also demonstrate that our selection approach reduces the model parameters and training time. CONCLUSIONS Adaptive channel selection coupled with semi-supervised learning can offer the possible bases for a light weight and computationally efficient seizure prediction system, making the daily monitoring practical to improve patients' quality of life.
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Affiliation(s)
- Hanyi Li
- School of Biomedical Engineering, Southern Medical University, Guangzhou, 510515, China; Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University, Guangzhou, China
| | - Jiahui Liao
- School of Electronics and Information Engineering, Harbin Institute of Technology at Shenzhen, Shenzhen, 518055, China
| | - Hongxiao Wang
- Department of Neurosurgery, Nanfang Hospital, Southern Medical University, Guangzhou, 510515, China
| | - Chang'an A Zhan
- School of Biomedical Engineering, Southern Medical University, Guangzhou, 510515, China; Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University, Guangzhou, China; Department of Rehabilitation Medicine, Zhujiang Hospital, Southern Medical University, Guangzhou, 510280, China.
| | - Feng Yang
- School of Biomedical Engineering, Southern Medical University, Guangzhou, 510515, China; Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University, Guangzhou, China.
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Fussner S, Boyne A, Han A, Nakhleh LA, Haneef Z. Differentiating Epileptic and Psychogenic Non-Epileptic Seizures Using Machine Learning Analysis of EEG Plot Images. SENSORS (BASEL, SWITZERLAND) 2024; 24:2823. [PMID: 38732929 PMCID: PMC11086151 DOI: 10.3390/s24092823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 04/22/2024] [Accepted: 04/28/2024] [Indexed: 05/13/2024]
Abstract
The treatment of epilepsy, the second most common chronic neurological disorder, is often complicated by the failure of patients to respond to medication. Treatment failure with anti-seizure medications is often due to the presence of non-epileptic seizures. Distinguishing non-epileptic from epileptic seizures requires an expensive and time-consuming analysis of electroencephalograms (EEGs) recorded in an epilepsy monitoring unit. Machine learning algorithms have been used to detect seizures from EEG, typically using EEG waveform analysis. We employed an alternative approach, using a convolutional neural network (CNN) with transfer learning using MobileNetV2 to emulate the real-world visual analysis of EEG images by epileptologists. A total of 5359 EEG waveform plot images from 107 adult subjects across two epilepsy monitoring units in separate medical facilities were divided into epileptic and non-epileptic groups for training and cross-validation of the CNN. The model achieved an accuracy of 86.9% (Area Under the Curve, AUC 0.92) at the site where training data were extracted and an accuracy of 87.3% (AUC 0.94) at the other site whose data were only used for validation. This investigation demonstrates the high accuracy achievable with CNN analysis of EEG plot images and the robustness of this approach across EEG visualization software, laying the groundwork for further subclassification of seizures using similar approaches in a clinical setting.
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Affiliation(s)
- Steven Fussner
- Department of Neurology, Baylor College of Medicine, Houston, TX 77030, USA
| | - Aidan Boyne
- Undergraduate Medical Education, Baylor College of Medicine, Houston, TX 77030, USA
| | - Albert Han
- Undergraduate Medical Education, Baylor College of Medicine, Houston, TX 77030, USA
| | - Lauren A. Nakhleh
- Undergraduate Medical Education, Baylor College of Medicine, Houston, TX 77030, USA
| | - Zulfi Haneef
- Department of Neurology, Baylor College of Medicine, Houston, TX 77030, USA
- Neurology Care Line, Michael E. DeBakey VA Medical Center, Houston, TX 77030, USA
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7
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Pontes ED, Pinto M, Lopes F, Teixeira C. Concept-drifts adaptation for machine learning EEG epilepsy seizure prediction. Sci Rep 2024; 14:8204. [PMID: 38589379 PMCID: PMC11001609 DOI: 10.1038/s41598-024-57744-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Accepted: 03/21/2024] [Indexed: 04/10/2024] Open
Abstract
Seizure prediction remains a challenge, with approximately 30% of patients unresponsive to conventional treatments. Addressing this issue is crucial for improving patients' quality of life, as timely intervention can mitigate the impact of seizures. In this research field, it is critical to identify the preictal interval, the transition from regular brain activity to a seizure. While previous studies have explored various Electroencephalogram (EEG) based methodologies for prediction, few have been clinically applicable. Recent studies have underlined the dynamic nature of EEG data, characterised by data changes with time, known as concept drifts, highlighting the need for automated methods to detect and adapt to these changes. In this study, we investigate the effectiveness of automatic concept drift adaptation methods in seizure prediction. Three patient-specific seizure prediction approaches with a 10-minute prediction horizon are compared: a seizure prediction algorithm incorporating a window adjustment method by optimising performance with Support Vector Machines (Backwards-Landmark Window), a seizure prediction algorithm incorporating a data-batch (seizures) selection method using a logistic regression (Seizure-batch Regression), and a seizure prediction algorithm with a dynamic integration of classifiers (Dynamic Weighted Ensemble). These methods incorporate a retraining process after each seizure and use a combination of univariate linear features and SVM classifiers. The Firing Power was used as a post-processing technique to generate alarms before seizures. These methodologies were compared with a control approach based on the typical machine learning pipeline, considering a group of 37 patients with Temporal Lobe Epilepsy from the EPILEPSIAE database. The best-performing approach (Backwards-Landmark Window) achieved results of 0.75 ± 0.33 for sensitivity and 1.03 ± 1.00 for false positive rate per hour. This new strategy performed above chance for 89% of patients with the surrogate predictor, whereas the control approach only validated 46%.
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Affiliation(s)
- Edson David Pontes
- Department of Informatics Engineering, CISUC, University of Coimbra, Coimbra, Portugal.
| | - Mauro Pinto
- Department of Informatics Engineering, CISUC, University of Coimbra, Coimbra, Portugal
| | - Fábio Lopes
- Department of Informatics Engineering, CISUC, University of Coimbra, Coimbra, Portugal
- Epilepsy Center, Department Neurosurgery, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - César Teixeira
- Department of Informatics Engineering, CISUC, University of Coimbra, Coimbra, Portugal
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8
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Costa G, Teixeira C, Pinto MF. Comparison between epileptic seizure prediction and forecasting based on machine learning. Sci Rep 2024; 14:5653. [PMID: 38454117 PMCID: PMC10920642 DOI: 10.1038/s41598-024-56019-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Accepted: 02/29/2024] [Indexed: 03/09/2024] Open
Abstract
Epilepsy affects around 1% of the population worldwide. Anti-epileptic drugs are an excellent option for controlling seizure occurrence but do not work for around one-third of patients. Warning devices employing seizure prediction or forecasting algorithms could bring patients new-found comfort and quality of life. These algorithms would attempt to detect a seizure's preictal period, a transitional moment between regular brain activity and the seizure, and relay this information to the user. Over the years, many seizure prediction studies using Electroencephalogram-based methodologies have been developed, triggering an alarm when detecting the preictal period. Recent studies have suggested a shift in view from prediction to forecasting. Seizure forecasting takes a probabilistic approach to the problem in question instead of the crisp approach of seizure prediction. In this field of study, the triggered alarm to symbolize the detection of a preictal period is substituted by a constant risk assessment analysis. The present work aims to explore methodologies capable of seizure forecasting and establish a comparison with seizure prediction results. Using 40 patients from the EPILEPSIAE database, we developed several patient-specific prediction and forecasting algorithms with different classifiers (a Logistic Regression, a 15 Support Vector Machines ensemble, and a 15 Shallow Neural Networks ensemble). Results show an increase of the seizure sensitivity in forecasting relative to prediction of up to 146% and in the number of patients that displayed an improvement over chance of up to 300%. These results suggest that a seizure forecasting methodology may be more suitable for seizure warning devices than a seizure prediction one.
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Affiliation(s)
- Gonçalo Costa
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, 3030-290, Coimbra, Portugal.
| | - César Teixeira
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, 3030-290, Coimbra, Portugal
| | - Mauro F Pinto
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, 3030-290, Coimbra, Portugal
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9
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Liao J, Wang J, Zhan CA, Yang F. Parameterized aperiodic and periodic components of single-channel EEG enables reliable seizure detection. Phys Eng Sci Med 2024; 47:31-47. [PMID: 37747646 DOI: 10.1007/s13246-023-01340-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Accepted: 09/14/2023] [Indexed: 09/26/2023]
Abstract
Although it is clinically important, a reliable and economical solution to automatic seizure detection for patients at home is yet to be developed. Traditional algorithms rely on multi-channel EEG signals and features of canonical EEG power description. This study is aimed to propose an effective single-channel EEG seizure detection method centered on novel EEG power parameterization and channel selection algorithms. We employed the publicly available multi-channel CHB-MIT Scalp EEG database to gauge the effectiveness of our approach. We first adapted a power spectra parameterization algorithm to characterize the aperiodic and periodic components of the ictal and inter-ictal EEGs. We selected four features based on their statistical significance and interpretability, and developed a ranking approach to channel selection for each patient. We then tested the effectiveness of our approaches to channel and feature selection for automatic seizure detection using support vector machine (SVM) as the classifier. The performance of our algorithm was evaluated using five-fold cross-validation and compared to those methods of comparable complexity (using one or two channels of EEG), in terms of accuracy, specificity, sensitivity, precision and F1 score. Some channels of EEG signals show strikingly different distributions of PSD features between the ictal and inter-ictal states. Four features including the offset and exponent parameters for the aperiodic component and the first and second highest total power (TPW1 and TPW2) form the basis of channel selection and the input of SVM classifier. The selected channel is found to be patient-specific. Our approach has achieved a mean sensitivity of 95.6%, specificity of 99.2%, accuracy of 98.6%, precision of 95.5%, and F1 score of 95.5%. Compared with algorithms in previous studies that used one or two channels of EEG signals, ours outperforms in specificity and accuracy with comparable sensitivity. EEG power spectra parameterization to feature extraction and feature ranking-based channel selection are found to enable efficient and effective automatic seizure detection based on single-channel EEG signal.
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Affiliation(s)
- Jiahui Liao
- School of Biomedical Engineering, Southern Medical University, Guangzhou, 510515, China
- Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University, Guangzhou, China
| | - Jun Wang
- Department of Neurosurgery, Nanfang Hospital, Southern Medical University, Guangzhou, 510515, China
| | - Chang'an A Zhan
- School of Biomedical Engineering, Southern Medical University, Guangzhou, 510515, China.
- Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University, Guangzhou, China.
- Department of Rehabilitation Medicine, Zhujiang Hospital, Southern Medical University, Guangzhou, 510280, China.
| | - Feng Yang
- School of Biomedical Engineering, Southern Medical University, Guangzhou, 510515, China.
- Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University, Guangzhou, China.
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10
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Batista J, Pinto MF, Tavares M, Lopes F, Oliveira A, Teixeira C. EEG epilepsy seizure prediction: the post-processing stage as a chronology. Sci Rep 2024; 14:407. [PMID: 38172583 PMCID: PMC10764904 DOI: 10.1038/s41598-023-50609-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Accepted: 12/21/2023] [Indexed: 01/05/2024] Open
Abstract
Almost one-third of epileptic patients fail to achieve seizure control through anti-epileptic drug administration. In the scarcity of completely controlling a patient's epilepsy, seizure prediction plays a significant role in clinical management and providing new therapeutic options such as warning or intervention devices. Seizure prediction algorithms aim to identify the preictal period that Electroencephalogram (EEG) signals can capture. However, this period is associated with substantial heterogeneity, varying among patients or even between seizures from the same patient. The present work proposes a patient-specific seizure prediction algorithm using post-processing techniques to explore the existence of a set of chronological events of brain activity that precedes epileptic seizures. The study was conducted with 37 patients with Temporal Lobe Epilepsy (TLE) from the EPILEPSIAE database. The designed methodology combines univariate linear features with a classifier based on Support Vector Machines (SVM) and two post-processing techniques to handle pre-seizure temporality in an easily explainable way, employing knowledge from network theory. In the Chronological Firing Power approach, we considered the preictal as a sequence of three brain activity events separated in time. In the Cumulative Firing Power approach, we assumed the preictal period as a sequence of three overlapping events. These methodologies were compared with a control approach based on the typical machine learning pipeline. We considered a Seizure Prediction horizon (SPH) of 5 mins and analyzed several values for the Seizure Occurrence Period (SOP) duration, between 10 and 55 mins. Our results showed that the Cumulative Firing Power approach may improve the seizure prediction performance. This new strategy performed above chance for 62% of patients, whereas the control approach only validated 49% of its models.
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Affiliation(s)
- Joana Batista
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal.
| | - Mauro F Pinto
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
| | - Mariana Tavares
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
| | - Fábio Lopes
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
- Epilepsy Center, Department Neurosurgery, Medical Center-University of Freiburg , Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Ana Oliveira
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
| | - César Teixeira
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
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11
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Wang Y, Shi Y, He Z, Chen Z, Zhou Y. Combining temporal and spatial attention for seizure prediction. Health Inf Sci Syst 2023; 11:38. [PMID: 37637435 PMCID: PMC10447681 DOI: 10.1007/s13755-023-00239-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2022] [Accepted: 07/31/2023] [Indexed: 08/29/2023] Open
Abstract
Purpose Approximately 1% of the world population is currently suffering from epilepsy. Successful seizure prediction is necessary for those patients. Influenced by neurons in their own and surrounding locations, the electroencephalogram (EEG) signals collected by scalp electrodes carry information of spatiotemporal interactions. Therefore, it is a great challenge to exploit the spatiotemporal information of EEG signals fully. Methods In this paper, a new seizure prediction model called Gatformer is proposed by fusing the graph attention network (GAT) and the Transformer. The temporal and spatial attention are combined to extract EEG information from the perspective of spatiotemporal interactions. The model aims to explore the temporal dependence of single-channel EEG signals and the spatial correlations among multi-channel EEG signals. It can automatically identify the most noteworthy interaction in brain regions and achieve accurate seizure prediction. Results Compared with the baseline models, the performance of our model is significantly improved. The false prediction rate (FPR) on the private dataset is 0.0064/h. The average accuracy, specificity and sensitivity are 98.25%, 99.36% and 97.65%. Conclusion The proposed model is comparable to the state of the arts. Experiments on different datasets show that it has good robustness and generalization performance. The high sensitivity and low FPR prove that this model has great potential to realize clinical assistance for diagnosis and treatment.
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Affiliation(s)
- Yao Wang
- School of Biomedical Engineering, Sun Yat-sen University, Guangzhou, 510006 Guangdong China
| | - Yufei Shi
- Department of Medical Informatics, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, 510080 Guangdong China
| | - Zhipeng He
- Department of Medical Informatics, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, 510080 Guangdong China
| | - Ziyi Chen
- Department of Neurology, First Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510080 Guangdong China
| | - Yi Zhou
- Department of Medical Informatics, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, 510080 Guangdong China
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12
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Wang Z, Hou S, Xiao T, Zhang Y, Lv H, Li J, Zhao S, Zhao Y. Lightweight Seizure Detection Based on Multi-Scale Channel Attention. Int J Neural Syst 2023; 33:2350061. [PMID: 37845193 DOI: 10.1142/s0129065723500612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2023]
Abstract
Epilepsy is one kind of neurological disease characterized by recurring seizures. Recurrent seizures can cause ongoing negative mental and cognitive damage to the patient. Therefore, timely diagnosis and treatment of epilepsy are crucial for patients. Manual electroencephalography (EEG) signals analysis is time and energy consuming, making automatic detection using EEG signals particularly important. Many deep learning algorithms have thus been proposed to detect seizures. These methods rely on expensive and bulky hardware, which makes them unsuitable for deployment on devices with limited resources due to their high demands on computer resources. In this paper, we propose a novel lightweight neural network for seizure detection using pure convolutions, which is composed of inverted residual structure and multi-scale channel attention mechanism. Compared with other methods, our approach significantly reduces the computational complexity, making it possible to deploy on low-cost portable devices for seizures detection. We conduct experiments on the CHB-MIT dataset and achieves 98.7% accuracy, 98.3% sensitivity and 99.1% specificity with 2.68[Formula: see text]M multiply-accumulate operations (MACs) and only 88[Formula: see text]K parameters.
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Affiliation(s)
- Ziwei Wang
- School of Information Science and Engineering, Shandong Normal University, Jinan 250358, P. R. China
| | - Sujuan Hou
- School of Information Science and Engineering, Shandong Normal University, Jinan 250358, P. R. China
| | - Tiantian Xiao
- School of Information Science and Engineering, Shandong Normal University, Jinan 250358, P. R. China
| | - Yongfeng Zhang
- School of Information Science and Engineering, Shandong Normal University, Jinan 250358, P. R. China
| | - Hongbin Lv
- School of Information Science and Engineering, Shandong Normal University, Jinan 250358, P. R. China
| | - Jiacheng Li
- School of Information Science and Engineering, Shandong Normal University, Jinan 250358, P. R. China
| | - Shanshan Zhao
- Department of Hematology, Heze Hospital of Traditional Chinese Medicine, Heze 274000, P. R. China
| | - Yanna Zhao
- School of Information Science and Engineering, Shandong Normal University, Jinan 250358, P. R. China
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13
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Palanisamy P, Urooj S, Arunachalam R, Lay-Ekuakille A. A Novel Prognostic Model Using Chaotic CNN with Hybridized Spoofing for Enhancing Diagnostic Accuracy in Epileptic Seizure Prediction. Diagnostics (Basel) 2023; 13:3382. [PMID: 37958278 PMCID: PMC10650532 DOI: 10.3390/diagnostics13213382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Revised: 08/30/2023] [Accepted: 11/01/2023] [Indexed: 11/15/2023] Open
Abstract
Epileptic seizure detection has undergone progressive advancements since its conception in the 1970s. From proof-of-concept experiments in the latter part of that decade, it has now become a vibrant area of clinical and laboratory research. In an effort to bring this technology closer to practical application in human patients, this study introduces a customized approach to selecting electroencephalogram (EEG) features and electrode positions for seizure prediction. The focus is on identifying precursors that occur within 10 min of the onset of abnormal electrical activity during a seizure. However, there are security concerns related to safeguarding patient EEG recordings against unauthorized access and network-based attacks. Therefore, there is an urgent need for an efficient prediction and classification method for encrypted EEG data. This paper presents an effective system for analyzing and recognizing encrypted EEG information using Arnold transform algorithms, chaotic mapping, and convolutional neural networks (CNNs). In this system, the EEG time series from each channel is converted into a 2D spectrogram image, which is then encrypted using chaotic algorithms. The encrypted data is subsequently processed by CNNs coupled with transfer learning (TL) frameworks. To optimize the fusion parameters of the ensemble learning classifiers, a hybridized spoofing optimization method is developed by combining the characteristics of corvid and gregarious-seeking agents. The evaluation of the model's effectiveness yielded the following results: 98.9 ± 0.3% accuracy, 98.2 ± 0.7% sensitivity, 98.6 ± 0.6% specificity, 98.6 ± 0.6% precision, and an F1 measure of 98.9 ± 0.6%. When compared with other state-of-the-art techniques applied to the same dataset, this novel strategy demonstrated one of the most effective seizure detection systems, as evidenced by these results.
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Affiliation(s)
- Preethi Palanisamy
- Department of Computer Science and Engineering, Kongunadu College of Engineering and Technology, Trichy 621215, India
| | - Shabana Urooj
- Department of Electrical Engineering, College of Engineering, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Rajesh Arunachalam
- Department of Electronics and Communication Engineering, Saveetha School of Engineering, SIMATS, Chennai 602105, India;
| | - Aime Lay-Ekuakille
- Dipartimento d’Ingegneria dell’Innovazione (DII) (Department of Innovation Engineering), Universita del Salento (University of Salento), Via Monteroni, Ed. “Corpo O”, 73100 Leece, Italy
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14
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Ji H, Xu T, Xue T, Xu T, Yan Z, Liu Y, Chen B, Jiang W. An effective fusion model for seizure prediction: GAMRNN. Front Neurosci 2023; 17:1246995. [PMID: 37674519 PMCID: PMC10477703 DOI: 10.3389/fnins.2023.1246995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2023] [Accepted: 07/24/2023] [Indexed: 09/08/2023] Open
Abstract
The early prediction of epileptic seizures holds paramount significance in patient care and medical research. Extracting useful spatial-temporal features to facilitate seizure prediction represents a primary challenge in this field. This study proposes GAMRNN, a novel methodology integrating a dual-layer gated recurrent unit (GRU) model with a convolutional attention module. GAMRNN aims to capture intricate spatial-temporal characteristics by highlighting informative feature channels and spatial pattern dynamics. We employ the Lion optimization algorithm to enhance the model's generalization capability and predictive accuracy. Our evaluation of GAMRNN on the widely utilized CHB-MIT EEG dataset demonstrates its effectiveness in seizure prediction. The results include an impressive average classification accuracy of 91.73%, sensitivity of 88.09%, specificity of 92.09%, and a low false positive rate of 0.053/h. Notably, GAMRNN enables early seizure prediction with a lead time ranging from 5 to 35 min, exhibiting remarkable performance improvements compared to similar prediction models.
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Affiliation(s)
- Hong Ji
- Shaanxi Provincial Key Laboratory of Fashion Design Intelligence, Xi'an Polytechnic University, Xi'an, China
| | - Ting Xu
- Shaanxi Provincial Key Laboratory of Fashion Design Intelligence, Xi'an Polytechnic University, Xi'an, China
| | - Tao Xue
- Shaanxi Provincial Key Laboratory of Fashion Design Intelligence, Xi'an Polytechnic University, Xi'an, China
| | - Tao Xu
- School of Software, Northwestern Polytechnical University, Xi'an, China
| | - Zhiqiang Yan
- Xijing Hospital, Fourth Military Medical University, Xi'an, China
| | - Yonghong Liu
- Xijing Hospital, Fourth Military Medical University, Xi'an, China
| | - Badong Chen
- Institute of Artistic Intelligence and Robotics, Xi'an Jiaotong University, Xi'an, China
| | - Wen Jiang
- Xijing Hospital, Fourth Military Medical University, Xi'an, China
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15
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Saemaldahr R, Ilyas M. Patient-Specific Preictal Pattern-Aware Epileptic Seizure Prediction with Federated Learning. SENSORS (BASEL, SWITZERLAND) 2023; 23:6578. [PMID: 37514873 PMCID: PMC10385318 DOI: 10.3390/s23146578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 07/15/2023] [Accepted: 07/17/2023] [Indexed: 07/30/2023]
Abstract
Electroencephalography (EEG) signals are the primary source for discriminating the preictal from the interictal stage, enabling early warnings before the seizure onset. Epileptic siezure prediction systems face significant challenges due to data scarcity, diversity, and privacy. This paper proposes a three-tier architecture for epileptic seizure prediction associated with the Federated Learning (FL) model, which is able to achieve enhanced capability by utilizing a significant number of seizure patterns from globally distributed patients while maintaining data privacy. The determination of the preictal state is influenced by global and local model-assisted decision making by modeling the two-level edge layer. The Spiking Encoder (SE), integrated with the Graph Convolutional Neural Network (Spiking-GCNN), works as the local model trained using a bi-timescale approach. Each local model utilizes the aggregated seizure knowledge obtained from the different medical centers through FL and determines the preictal probability in the coarse-grained personalization. The Adaptive Neuro-Fuzzy Inference System (ANFIS) is utilized in fine-grained personalization to recognize epileptic seizure patients by examining the outcomes of the FL model, heart rate variability features, and patient-specific clinical features. Thus, the proposed approach achieved 96.33% sensitivity and 96.14% specificity when tested on the CHB-MIT EEG dataset when modeling was performed using the bi-timescale approach and Spiking-GCNN-based epileptic pattern learning. Moreover, the adoption of federated learning greatly assists the proposed system, yielding a 96.28% higher accuracy as a result of addressing data scarcity.
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Affiliation(s)
- Raghdah Saemaldahr
- Department of Computer Science, Taibah University, Medina 42353, Saudi Arabia
- Department of Electrical Engineering and Computer Science, Florida Atlantic University, Boca Raton, FL 33431, USA
| | - Mohammad Ilyas
- Department of Electrical Engineering and Computer Science, Florida Atlantic University, Boca Raton, FL 33431, USA
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16
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Gagliano L, Chang A, Shokooh LA, Toffa DH, Lesage F, Sawan M, Nguyen DK, Assi EB. Cross-bispectrum connectivity of intracranial EEG: A novel approach to seizure onset zone localization. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2023; 2023:1-4. [PMID: 38082787 DOI: 10.1109/embc40787.2023.10340885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Connectivity analyses of intracranial electroencephalography (iEEG) could guide surgical planning for epilepsy surgery by improving the delineation of the seizure onset zone. Traditional approaches fail to quantify important interactions between frequency components. To assess if effective connectivity based on cross-bispectrum -a measure of nonlinear multivariate cross-frequency coupling- can quantitatively identify generators of seizure activity, cross-bispectrum connectivity between channels was computed from iEEG recordings of 5 patients (34 seizures) with good postsurgical outcome. Personalized thresholds of 50% and 80% of the maximum coupling values were used to identify generating electrode channels. In all patients, outflow coupling between α (8-15 Hz) and β (16-31 Hz) frequencies identified at least one electrode inside the resected seizure onset zone. With the 50% and 80% thresholds respectively, an average of 5 (44.7%; specificity = 82.6%) and 2 (22.5%; specificity = 99.0%) resected electrodes were correctly identified. Results show promise for the automatic identification of the seizure onset zone based on cross-bispectrum connectivity analysis.
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17
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Pandey A, Singh SK, Udmale SS, Shukla K. An intelligent optimized deep learning model to achieve early prediction of epileptic seizures. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2023.104798] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2023]
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18
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Wu X, Yang Z, Zhang T, Zhang L, Qiao L. An end-to-end seizure prediction approach using long short-term memory network. Front Hum Neurosci 2023; 17:1187794. [PMID: 37275341 PMCID: PMC10232837 DOI: 10.3389/fnhum.2023.1187794] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Accepted: 05/02/2023] [Indexed: 06/07/2023] Open
Abstract
There are increasing epilepsy patients suffering from the pain of seizure onsets, and effective prediction of seizures could improve their quality of life. To obtain high sensitivity for epileptic seizure prediction, current studies generally need complex feature extraction operations, which heavily depends on the artificial experience (or domain knowledge) and is highly subjective. To address these issues, in this paper we propose an end-to-end epileptic seizure prediction approach based on the long short-term memory network (LSTM). In the new method, only the gamma band of raw electroencephalography (EEG) signals is extracted as network input directly for seizure prediction, thus avoiding subjective and expensive feature design process. Despite its simplicity, the proposed method achieves the mean sensitivity of 91.76% and false prediction rate (FPR) of 0.29/h on Children's Hospital Boston-MIT (CHB-MIT) scalp EEG Database, respectively, when identifying the preictal stage from the EEG signals. Furthermore, different from traditional methods that only consider the classification of preictal and interictal EEG, we introduce the postictal stage as an extra class in the proposed method. As a result, the performance of seizure prediction is further improved, obtaining a higher sensitivity of 92.17% and a low FPR of 0.27/h. The mean warning time is 44.46 min, which suggests that sufficient time is reserved for patients to take intervention measures by this prediction method.
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Affiliation(s)
- Xiao Wu
- School of Computer Science and Technology, Shandong Jianzhu University, Jinan, China
- School of Mathematics Science, Liaocheng University, Liaocheng, China
| | - Zhaohui Yang
- School of Computer Science and Technology, Shandong Jianzhu University, Jinan, China
| | - Tinglin Zhang
- School of Information, Yancheng Institute of Technology, Yancheng, China
| | - Limei Zhang
- School of Computer Science and Technology, Shandong Jianzhu University, Jinan, China
| | - Lishan Qiao
- School of Computer Science and Technology, Shandong Jianzhu University, Jinan, China
- School of Mathematics Science, Liaocheng University, Liaocheng, China
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19
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A difference attention ResNet-LSTM network for epileptic seizure detection using EEG signal. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2023.104652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
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20
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Lopes F, Leal A, Pinto MF, Dourado A, Schulze-Bonhage A, Dümpelmann M, Teixeira C. Removing artefacts and periodically retraining improve performance of neural network-based seizure prediction models. Sci Rep 2023; 13:5918. [PMID: 37041158 PMCID: PMC10090199 DOI: 10.1038/s41598-023-30864-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Accepted: 03/02/2023] [Indexed: 04/13/2023] Open
Abstract
The development of seizure prediction models is often based on long-term scalp electroencephalograms (EEGs) since they capture brain electrical activity, are non-invasive, and come at a relatively low-cost. However, they suffer from major shortcomings. First, long-term EEG is usually highly contaminated with artefacts. Second, changes in the EEG signal over long intervals, known as concept drift, are often neglected. We evaluate the influence of these problems on deep neural networks using EEG time series and on shallow neural networks using widely-used EEG features. Our patient-specific prediction models were tested in 1577 hours of continuous EEG, containing 91 seizures from 41 patients with temporal lobe epilepsy who were undergoing pre-surgical monitoring. Our results showed that cleaning EEG data, using a previously developed artefact removal method based on deep convolutional neural networks, improved prediction performance. We also found that retraining the models over time reduced false predictions. Furthermore, the results show that although deep neural networks processing EEG time series are less susceptible to false alarms, they may need more data to surpass feature-based methods. These findings highlight the importance of robust data denoising and periodic adaptation of seizure prediction models.
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Affiliation(s)
- Fábio Lopes
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal.
- Epilepsy Center, Department Neurosurgery, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
| | - Adriana Leal
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
| | - Mauro F Pinto
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
| | - António Dourado
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
| | - Andreas Schulze-Bonhage
- Epilepsy Center, Department Neurosurgery, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Matthias Dümpelmann
- Epilepsy Center, Department Neurosurgery, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - César Teixeira
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
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21
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Patient-specific method for predicting epileptic seizures based on DRSN-GRU. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104449] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2022]
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22
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Wong S, Simmons A, Rivera-Villicana J, Barnett S, Sivathamboo S, Perucca P, Ge Z, Kwan P, Kuhlmann L, Vasa R, Mouzakis K, O'Brien TJ. EEG datasets for seizure detection and prediction- A review. Epilepsia Open 2023. [PMID: 36740244 DOI: 10.1002/epi4.12704] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2022] [Accepted: 01/28/2023] [Indexed: 02/07/2023] Open
Abstract
Electroencephalogram (EEG) datasets from epilepsy patients have been used to develop seizure detection and prediction algorithms using machine learning (ML) techniques with the aim of implementing the learned model in a device. However, the format and structure of publicly available datasets are different from each other, and there is a lack of guidelines on the use of these datasets. This impacts the generatability, generalizability, and reproducibility of the results and findings produced by the studies. In this narrative review, we compiled and compared the different characteristics of the publicly available EEG datasets that are commonly used to develop seizure detection and prediction algorithms. We investigated the advantages and limitations of the characteristics of the EEG datasets. Based on our study, we identified 17 characteristics that make the EEG datasets unique from each other. We also briefly looked into how certain characteristics of the publicly available datasets affect the performance and outcome of a study, as well as the influences it has on the choice of ML techniques and preprocessing steps required to develop seizure detection and prediction algorithms. In conclusion, this study provides a guideline on the choice of publicly available EEG datasets to both clinicians and scientists working to develop a reproducible, generalizable, and effective seizure detection and prediction algorithm.
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Affiliation(s)
- Sheng Wong
- Applied Artificial Intelligence Institute, Deakin University, Burwood, Victoria, Australia
| | - Anj Simmons
- Applied Artificial Intelligence Institute, Deakin University, Burwood, Victoria, Australia
| | | | - Scott Barnett
- Applied Artificial Intelligence Institute, Deakin University, Burwood, Victoria, Australia
| | - Shobi Sivathamboo
- Department of Medicine, The Royal Melbourne Hospital, The University of Melbourne, Parkville, Victoria, Australia.,Department of Neurology, The Royal Melbourne Hospital, Parkville, Victoria, Australia.,Department of Neuroscience, Central Clinical School, Monash University, Melbourne, Victoria, Australia.,Department of Neurology, Alfred Health, Melbourne, Victoria, Australia
| | - Piero Perucca
- Department of Neurology, The Royal Melbourne Hospital, Parkville, Victoria, Australia.,Department of Neuroscience, Central Clinical School, Monash University, Melbourne, Victoria, Australia.,Department of Neurology, Alfred Health, Melbourne, Victoria, Australia.,Department of Medicine, Austin Health, The University of Melbourne, Heidelberg, Victoria, Australia.,Comprehensive Epilepsy Program, Austin Health, Heidelberg, Victoria, Australia
| | - Zongyuan Ge
- Monash eResearch Centre, Monash University, Clayton, Victoria, Australia
| | - Patrick Kwan
- Department of Neuroscience, Central Clinical School, Monash University, Melbourne, Victoria, Australia.,Department of Neurology, Alfred Health, Melbourne, Victoria, Australia
| | - Levin Kuhlmann
- Department of Data Science and AI, Faculty of IT, Monash University, Clayton, Victoria, Australia.,Department of Medicine, St Vincent's Hospital, The University of Melbourne, Melbourne, Victoria, Australia
| | - Rajesh Vasa
- Applied Artificial Intelligence Institute, Deakin University, Burwood, Victoria, Australia
| | - Kon Mouzakis
- Applied Artificial Intelligence Institute, Deakin University, Burwood, Victoria, Australia
| | - Terence J O'Brien
- Department of Medicine, The Royal Melbourne Hospital, The University of Melbourne, Parkville, Victoria, Australia.,Department of Neurology, The Royal Melbourne Hospital, Parkville, Victoria, Australia.,Department of Neuroscience, Central Clinical School, Monash University, Melbourne, Victoria, Australia.,Department of Neurology, Alfred Health, Melbourne, Victoria, Australia
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23
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Reeder S, Foster E, Vishwanath S, Kwan P. Experience of waiting for seizure freedom and perception of machine learning technologies to support treatment decision: A qualitative study in adults with recent onset epilepsy. Epilepsy Res 2023; 190:107096. [PMID: 36738538 DOI: 10.1016/j.eplepsyres.2023.107096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2022] [Revised: 01/16/2023] [Accepted: 01/23/2023] [Indexed: 01/27/2023]
Abstract
PURPOSE With no reliable surrogate biomarkers for treatment response, people with epilepsy currently await the passage of time to determine whether prescribed treatments are effective. Few studies have examined the issues faced by people with epilepsy during this waiting period. We aim to explore the experiences of people with recently diagnosed epilepsy as they wait to achieve seizure freedom. METHODS We purposively sampled adults of working age who had been diagnosed and treated for epilepsy for less than four years. Semi-structured interviews were undertaken between July and September 2021. A thematic analysis using a framework approach was performed. RESULTS We recruited 15 patients. Results revealed four main themes: 1) Impact on mental health, as people with newly diagnosed epilepsy described waiting for seizure freedom as a time of vulnerability, uncertainty, and confusion. 2) Participants described their life as "on hold", prior to achieving effective seizure control 3) Difficulty navigating health systems to find and understand information about epilepsy, tests, and medications, and to find the 'right' health professional to address their needs. 4) Technology systems that support clinician decision making with selecting effective medications early after diagnosis were cautiously welcomed by participants. CONCLUSION Interventions are needed to reduce the negative impacts experienced by people who are newly diagnosed with epilepsy while waiting for effective seizure control. Technology systems that support clinician decision making were acceptable, as people with epilepsy sought accessible and effective solutions to restore a sense of control in their lives.
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Affiliation(s)
- Sandra Reeder
- School of Public Health and Preventive Medicine, Monash University, 553 St Kilda Road, Melbourne 3004, Australia; Department of Neurosciences, Monash University, Central Clinical School, 99 Commercial Road, Melbourne 3004, Australia.
| | - Emma Foster
- Department of Neurosciences, Monash University, Central Clinical School, 99 Commercial Road, Melbourne 3004, Australia; Department of Neurology, The Alfred, 55 Commercial Road, Melbourne 3004, Australia.
| | - Swarna Vishwanath
- School of Public Health and Preventive Medicine, Monash University, 553 St Kilda Road, Melbourne 3004, Australia; Department of Neurosciences, Monash University, Central Clinical School, 99 Commercial Road, Melbourne 3004, Australia.
| | - Patrick Kwan
- Department of Neurosciences, Monash University, Central Clinical School, 99 Commercial Road, Melbourne 3004, Australia; Department of Neurology, The Alfred, 55 Commercial Road, Melbourne 3004, Australia.
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24
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Unsupervised EEG preictal interval identification in patients with drug-resistant epilepsy. Sci Rep 2023; 13:784. [PMID: 36646727 PMCID: PMC9842648 DOI: 10.1038/s41598-022-23902-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2022] [Accepted: 11/07/2022] [Indexed: 01/18/2023] Open
Abstract
Typical seizure prediction models aim at discriminating interictal brain activity from pre-seizure electrographic patterns. Given the lack of a preictal clinical definition, a fixed interval is widely used to develop these models. Recent studies reporting preictal interval selection among a range of fixed intervals show inter- and intra-patient preictal interval variability, possibly reflecting the heterogeneity of the seizure generation process. Obtaining accurate labels of the preictal interval can be used to train supervised prediction models and, hence, avoid setting a fixed preictal interval for all seizures within the same patient. Unsupervised learning methods hold great promise for exploring preictal alterations on a seizure-specific scale. Multivariate and univariate linear and nonlinear features were extracted from scalp electroencephalography (EEG) signals collected from 41 patients with drug-resistant epilepsy undergoing presurgical monitoring. Nonlinear dimensionality reduction was performed for each group of features and each of the 226 seizures. We applied different clustering methods in searching for preictal clusters located until 2 h before the seizure onset. We identified preictal patterns in 90% of patients and 51% of the visually inspected seizures. The preictal clusters manifested a seizure-specific profile with varying duration (22.9 ± 21.0 min) and starting time before seizure onset (47.6 ± 27.3 min). Searching for preictal patterns on the EEG trace using unsupervised methods showed that it is possible to identify seizure-specific preictal signatures for some patients and some seizures within the same patient.
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25
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Goel S, Agrawal R, Bharti R. Epileptic seizure prediction and classification based on statistical features using LSTM fully connected neural network. JOURNAL OF INTELLIGENT & FUZZY SYSTEMS 2023. [DOI: 10.3233/jifs-222745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Epilepsy, the most common neurological disorder by which over 65 million people are affected across the world. Recent research has shown a very large interest to predict and diagnose epilepsy well before time. The continuous monitoring of EEG signals for seizure detection in electroencephalogram (EEG) is a very tedious and time taking process and therefore requires a qualified and trained clinical specialist. This paper presents a novel approach to detect and predict the epileptic signal in the recorded electroencephalogram (EEG). There is always a requirement for a nonlinear technique to examine the EEG signals due to the random nature of EEG signals. Therefore, we are providing an alternate method that extracts various entropy measures such Sample Entropy, Spectral Entropy, Permutation Entropy, and Shannon Entropy as statistical features from EEG signal. Based on these extracted features LSTM Fully connected Neural Network is used to classify the EEG signal as Focal and Non-focal. The proposed method gives a new insight into EEG signals by providing sensitivity as an added measure using deep learning along with accuracy and precision.
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Affiliation(s)
- Sachin Goel
- Veer Madho Singh Bhandari Uttarakhand Technical University, Dehradun, India
| | - Rajeev Agrawal
- Lloyd Institute of Engineering & Technology, Greater Noida, India
| | - R.K. Bharti
- Bipin Tripathi Kumaon Institute of Technology, Dwarahat, Uttarakhand, India
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26
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Abstract
OBJECTIVE Uncontrolled epilepsy creates a constant source of worry for patients and puts them at a high risk of injury. Identifying recurrent "premonitory" symptoms of seizures and using them to recalibrate seizure prediction algorithms may improve prediction performances. This study aimed to investigate patients' ability to predict oncoming seizures based on preictal symptoms. METHODS Through an online survey, demographics and clinical characteristics (e.g., seizure frequency, epilepsy duration, and postictal symptom duration) were collected from people with epilepsy and caregivers across Canada. Respondents were asked to answer questions regarding their ability to predict seizures through warning symptoms. A total of 196 patients and 150 caregivers were included and were separated into three groups: those who reported warning symptoms within the 5 minutes preceding a seizure, prodromes (symptoms earlier than 5 minutes before seizure), and no warning symptoms. RESULTS Overall, 12.2% of patients and 12.0% of caregivers reported predictive prodromes ranging from 5 minutes to more than 24 hours before the seizures (median of 2 hours). The most common were dizziness/vertigo (28%), mood changes (26%), and cognitive changes (21%). Statistical testing showed that respondents who reported prodromes also reported significantly longer postictal recovery periods compared to those who did not report predictive prodromes (P < 0.05). CONCLUSION Findings suggest that patients who present predictive seizure prodromes may be characterized by longer patient-reported postictal recovery periods. Studying the correlation between seizure severity and predictability and investigating the electrical activity underlying prodromes may improve our understanding of preictal mechanisms and ability to predict seizures.
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27
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Wang C, Wu Y, Wang C, Zhu Y, Wang C, Niu Y, Shao Z, Gao X, Zhao Z, Yu Y. MI-EEG classification using Shannon complex wavelet and convolutional neural networks. Appl Soft Comput 2022. [DOI: 10.1016/j.asoc.2022.109685] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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28
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Wu X, Zhang T, Zhang L, Qiao L. Epileptic seizure prediction using successive variational mode decomposition and transformers deep learning network. Front Neurosci 2022; 16:982541. [PMID: 36225738 PMCID: PMC9548615 DOI: 10.3389/fnins.2022.982541] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 08/24/2022] [Indexed: 12/01/2022] Open
Abstract
As one of the most common neurological disorders, epilepsy causes great physical and psychological damage to the patients. The long-term recurrent and unprovoked seizures make the prediction necessary. In this paper, a novel approach for epileptic seizure prediction based on successive variational mode decomposition (SVMD) and transformers is proposed. SVMD is extended to multidimensional form for time-frequency analysis of multi-channel signals. It could adaptively extract common band-limited intrinsic modes among all channels on different time scales by solving a variational optimization problem. In the proposed seizure prediction method, data are first decomposed into multiple modes on different time scales by multivariate SVMD, and then, irrelevant modes are removed for preprocessing. Finally, power spectrum of denoised data is input to a pre-trained bidirectional encoder representations from transformers (BERTs) for prediction. The BERT could identify the mode information related to epileptic seizures in time-frequency domain. It shows fair prediction performance on an intracranial EEG dataset with the average sensitivity of 0.86 and FPR of 0.18/h.
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Affiliation(s)
- Xiao Wu
- School of Mathematics Science, Liaocheng University, Liaocheng, China
| | - Tinglin Zhang
- School of Mathematics Science, Liaocheng University, Liaocheng, China
| | - Limei Zhang
- School of Computer Science and Technology, Shandong Jianzhu University, Jinan, China
| | - Lishan Qiao
- School of Mathematics Science, Liaocheng University, Liaocheng, China
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Shoeibi A, Moridian P, Khodatars M, Ghassemi N, Jafari M, Alizadehsani R, Kong Y, Gorriz JM, Ramírez J, Khosravi A, Nahavandi S, Acharya UR. An overview of deep learning techniques for epileptic seizures detection and prediction based on neuroimaging modalities: Methods, challenges, and future works. Comput Biol Med 2022; 149:106053. [DOI: 10.1016/j.compbiomed.2022.106053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2022] [Revised: 08/17/2022] [Accepted: 08/17/2022] [Indexed: 02/01/2023]
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Yang Y, Truong ND, Eshraghian JK, Nikpour A, Kavehei O. Weak self-supervised learning for seizure forecasting: a feasibility study. ROYAL SOCIETY OPEN SCIENCE 2022; 9:220374. [PMID: 35950196 PMCID: PMC9346358 DOI: 10.1098/rsos.220374] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Accepted: 07/12/2022] [Indexed: 05/27/2023]
Abstract
This paper proposes an artificial intelligence system that continuously improves over time at event prediction using initially unlabelled data by using self-supervised learning. Time-series data are inherently autocorrelated. By using a detection model to generate weak labels on the fly, which are concurrently used as targets to train a prediction model on a time-shifted input data stream, this autocorrelation can effectively be harnessed to reduce the burden of manual labelling. This is critical in medical patient monitoring, as it enables the development of personalized forecasting models without demanding the annotation of long sequences of physiological signal recordings. We perform a feasibility study on seizure prediction, which is identified as an ideal test case, as pre-ictal brainwaves are patient-specific, and tailoring models to individual patients is known to improve forecasting performance significantly. Our self-supervised approach is used to train individualized forecasting models for 10 patients, showing an average relative improvement in sensitivity by 14.30% and a reduction in false alarms by 19.61% in early seizure forecasting. This proof-of-concept on the feasibility of using a continuous stream of time-series neurophysiological data paves the way towards a low-power neuromorphic neuromodulation system.
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Affiliation(s)
- Yikai Yang
- School of Biomedical Engineering, and the Australian Research Council Training Centre for Innovative BioEngineering, Faculty of EngineeringThe University of Sydney Nano Institute, Sydney, New South Wales 2006, Australia
| | - Nhan Duy Truong
- School of Biomedical Engineering, and the Australian Research Council Training Centre for Innovative BioEngineering, Faculty of EngineeringThe University of Sydney Nano Institute, Sydney, New South Wales 2006, Australia
- The University of Sydney Nano Institute, Sydney, New South Wales 2006, Australia
| | - Jason K. Eshraghian
- Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
| | - Armin Nikpour
- Faculty of Medicine and Health, Central Clinical School, The University of Sydney, Sydney, New South Wales 2006, Australia
- Comprehensive Epilepsy Service and Department of Neurology, Royal Prince Alfred Hospital, Camperdown, New South Wales 2050, Australia
| | - Omid Kavehei
- School of Biomedical Engineering, and the Australian Research Council Training Centre for Innovative BioEngineering, Faculty of EngineeringThe University of Sydney Nano Institute, Sydney, New South Wales 2006, Australia
- The University of Sydney Nano Institute, Sydney, New South Wales 2006, Australia
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Ray J, Wijesekera L, Cirstea S. Machine learning and clinical neurophysiology. J Neurol 2022; 269:6678-6684. [PMID: 35907045 DOI: 10.1007/s00415-022-11283-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Revised: 07/05/2022] [Accepted: 07/09/2022] [Indexed: 11/29/2022]
Abstract
Clinical neurophysiology constructs a wealth of dynamic information pertaining to the integrity and function of both central and peripheral nervous systems. As with many technological fields, there has been an explosion of data in neurophysiology over recent years, and this requires considerable analysis by experts. Computational algorithms and especially advances in machine learning (ML) have the ability to assist with this task and potentially reveal hidden insights. In this update article, we will provide a brief overview where such technology is being applied in clinical neurophysiology and possible future directions.
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Affiliation(s)
- Julian Ray
- Department of Clinical Neurophysiology, Addenbrooke's Hospital, Cambridge University Hospitals Neurosciences, Cambridge, UK.
| | - Lokesh Wijesekera
- Department of Clinical Neurophysiology, Addenbrooke's Hospital, Cambridge University Hospitals Neurosciences, Cambridge, UK
| | - Silvia Cirstea
- Department of Clinical Neurophysiology, Addenbrooke's Hospital, Cambridge University Hospitals Neurosciences, Cambridge, UK
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Multi-Channel Vision Transformer for Epileptic Seizure Prediction. Biomedicines 2022; 10:biomedicines10071551. [PMID: 35884859 PMCID: PMC9312955 DOI: 10.3390/biomedicines10071551] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 06/24/2022] [Accepted: 06/27/2022] [Indexed: 02/04/2023] Open
Abstract
Epilepsy is a neurological disorder that causes recurrent seizures and sometimes loss of awareness. Around 30% of epileptic patients continue to have seizures despite taking anti-seizure medication. The ability to predict the future occurrence of seizures would enable the patients to take precautions against probable injuries and administer timely treatment to abort or control impending seizures. In this study, we introduce a Transformer-based approach called Multi-channel Vision Transformer (MViT) for automated and simultaneous learning of the spatio-temporal-spectral features in multi-channel EEG data. Continuous wavelet transform, a simple yet efficient pre-processing approach, is first used for turning the time-series EEG signals into image-like time-frequency representations named Scalograms. Each scalogram is split into a sequence of fixed-size non-overlapping patches, which are then fed as inputs to the MViT for EEG classification. Extensive experiments on three benchmark EEG datasets demonstrate the superiority of the proposed MViT algorithm over the state-of-the-art seizure prediction methods, achieving an average prediction sensitivity of 99.80% for surface EEG and 90.28-91.15% for invasive EEG data.
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Ahmad I, Wang X, Zhu M, Wang C, Pi Y, Khan JA, Khan S, Samuel OW, Chen S, Li G. EEG-Based Epileptic Seizure Detection via Machine/Deep Learning Approaches: A Systematic Review. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:6486570. [PMID: 35755757 PMCID: PMC9232335 DOI: 10.1155/2022/6486570] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Accepted: 05/10/2022] [Indexed: 12/21/2022]
Abstract
Epileptic seizure is one of the most chronic neurological diseases that instantaneously disrupts the lifestyle of affected individuals. Toward developing novel and efficient technology for epileptic seizure management, recent diagnostic approaches have focused on developing machine/deep learning model (ML/DL)-based electroencephalogram (EEG) methods. Importantly, EEG's noninvasiveness and ability to offer repeated patterns of epileptic-related electrophysiological information have motivated the development of varied ML/DL algorithms for epileptic seizure diagnosis in the recent years. However, EEG's low amplitude and nonstationary characteristics make it difficult for existing ML/DL models to achieve a consistent and satisfactory diagnosis outcome, especially in clinical settings, where environmental factors could hardly be avoided. Though several recent works have explored the use of EEG-based ML/DL methods and statistical feature for seizure diagnosis, it is unclear what the advantages and limitations of these works are, which might preclude the advancement of research and development in the field of epileptic seizure diagnosis and appropriate criteria for selecting ML/DL models and statistical feature extraction methods for EEG-based epileptic seizure diagnosis. Therefore, this paper attempts to bridge this research gap by conducting an extensive systematic review on the recent developments of EEG-based ML/DL technologies for epileptic seizure diagnosis. In the review, current development in seizure diagnosis, various statistical feature extraction methods, ML/DL models, their performances, limitations, and core challenges as applied in EEG-based epileptic seizure diagnosis were meticulously reviewed and compared. In addition, proper criteria for selecting appropriate and efficient feature extraction techniques and ML/DL models for epileptic seizure diagnosis were also discussed. Findings from this study will aid researchers in deciding the most efficient ML/DL models with optimal feature extraction methods to improve the performance of EEG-based epileptic seizure detection.
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Affiliation(s)
- Ijaz Ahmad
- CAS Key Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
- Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, China
- Guangdong-Hong Kong-Macao Joint Laboratory of Human-Machine Intelligence-Synergy Systems, Chinese Academy of Sciences, Shenzhen, China
| | - Xin Wang
- CAS Key Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
- Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, China
- Guangdong-Hong Kong-Macao Joint Laboratory of Human-Machine Intelligence-Synergy Systems, Chinese Academy of Sciences, Shenzhen, China
| | - Mingxing Zhu
- Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, China
- School of Electronics and Information Engineering, Harbin Institute of Technology, Shenzhen, China
| | - Cheng Wang
- CAS Key Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
- Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, China
- Guangdong-Hong Kong-Macao Joint Laboratory of Human-Machine Intelligence-Synergy Systems, Chinese Academy of Sciences, Shenzhen, China
| | - Yao Pi
- School of Biomedical Engineering, Sun Yat-Sen University, Guangzhou, China
| | - Javed Ali Khan
- Department of Software Engineering, University of Science and Technology, Bannu, Khyber Pakhtunkhwa, Pakistan
| | - Siyab Khan
- Institute of Computer Science and Information Technology, The University of Agriculture, Peshawar, Khyber Pakhtunkhwa, Pakistan
| | - Oluwarotimi Williams Samuel
- CAS Key Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
- Guangdong-Hong Kong-Macao Joint Laboratory of Human-Machine Intelligence-Synergy Systems, Chinese Academy of Sciences, Shenzhen, China
| | - Shixiong Chen
- CAS Key Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
- Guangdong-Hong Kong-Macao Joint Laboratory of Human-Machine Intelligence-Synergy Systems, Chinese Academy of Sciences, Shenzhen, China
| | - Guanglin Li
- CAS Key Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
- Guangdong-Hong Kong-Macao Joint Laboratory of Human-Machine Intelligence-Synergy Systems, Chinese Academy of Sciences, Shenzhen, China
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Zhao Y, Li C, Liu X, Qian R, Song R, Chen X. Patient-Specific Seizure Prediction via Adder Network and Supervised Contrastive Learning. IEEE Trans Neural Syst Rehabil Eng 2022; 30:1536-1547. [PMID: 35657835 DOI: 10.1109/tnsre.2022.3180155] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Deep learning (DL) methods have been widely used in the field of seizure prediction from electroencephalogram (EEG) in recent years. However, DL methods usually have numerous multiplication operations resulting in high computational complexity. In addtion, most of the current approaches in this field focus on designing models with special architectures to learn representations, ignoring the use of intrinsic patterns in the data. In this study, we propose a simple and effective end-to-end adder network and supervised contrastive learning (AddNet-SCL). The method uses addition instead of the massive multiplication in the convolution process to reduce the computational cost. Besides, contrastive learning is employed to effectively use label information, points of the same class are clustered together in the projection space, and points of different class are pushed apart at the same time. Moreover, the proposed model is trained by combining the supervised contrastive loss from the projection layer and the cross-entropy loss from the classification layer. Since the adder networks uses the ℓ1-norm distance as the similarity measure between the input feature and the filters, the gradient function of the network changes, an adaptive learning rate strategy is employed to ensure the convergence of AddNet-CL. Experimental results show that the proposed method achieves 94.9% sensitivity, an area under curve (AUC) of 94.2%, and a false positive rate of (FPR) 0.077/h on 19 patients in the CHB-MIT database and 89.1% sensitivity, an AUC of 83.1%, and an FPR of 0.120/h in the Kaggle database. Competitive results show that this method has broad prospects in clinical practice.
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Pinto MF, Leal A, Lopes F, Pais J, Dourado A, Sales F, Martins P, Teixeira CA. On the clinical acceptance of black-box systems for EEG seizure prediction. Epilepsia Open 2022; 7:247-259. [PMID: 35377561 PMCID: PMC9159247 DOI: 10.1002/epi4.12597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Revised: 03/07/2022] [Accepted: 03/31/2022] [Indexed: 11/06/2022] Open
Abstract
Seizure prediction may be the solution for epileptic patients whose drugs and surgery do not control seizures. Despite 46 years of research, few devices/systems underwent clinical trials and/or are commercialized, where the most recent state-of-the-art approaches, as neural networks models, are not used to their full potential. The latter demonstrates the existence of social barriers to new methodologies due to data bias, patient safety, and legislation compliance. In the form of literature review, we performed a qualitative study to analyze the seizure prediction ecosystem to find these social barriers. With the Grounded Theory, we draw hypotheses from data, while with the Actor-Network Theory we considered that technology shapes social configurations and interests, being fundamental in healthcare. We obtained a social network that describes the ecosystem and propose research guidelines aiming at clinical acceptance. Our most relevant conclusion is the need for model explainability, but not necessarily intrinsically interpretable models, for the case of seizure prediction. Accordingly, we argue that it is possible to develop robust prediction models, including black-box systems to some extent, while avoiding data bias, ensuring patient safety, and still complying with legislation, if they can deliver human- comprehensible explanations. Due to skepticism and patient safety reasons, many authors advocate the use of transparent models which may limit their performance and potential. Our study highlights a possible path, by using model explainability, on how to overcome these barriers while allowing the use of more computationally robust models.
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Affiliation(s)
- Mauro F Pinto
- Department of Informatics Engineering, CISUC, University of Coimbra, Coimbra, Portugal
| | - Adriana Leal
- Department of Informatics Engineering, CISUC, University of Coimbra, Coimbra, Portugal
| | - Fábio Lopes
- Department of Informatics Engineering, CISUC, University of Coimbra, Coimbra, Portugal.,Department Neurosurgery, Epilepsy Center, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | | | - António Dourado
- Department of Informatics Engineering, CISUC, University of Coimbra, Coimbra, Portugal
| | - Francisco Sales
- Refractory Epilepsy Reference Centre, Centro Hospitalar e Universitário de Coimbra, EPE, Coimbra, Portugal
| | - Pedro Martins
- Department of Informatics Engineering, CISUC, University of Coimbra, Coimbra, Portugal
| | - César A Teixeira
- Department of Informatics Engineering, CISUC, University of Coimbra, Coimbra, Portugal
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Pinto M, Coelho T, Leal A, Lopes F, Dourado A, Martins P, Teixeira C. Interpretable EEG seizure prediction using a multiobjective evolutionary algorithm. Sci Rep 2022; 12:4420. [PMID: 35292691 PMCID: PMC8924190 DOI: 10.1038/s41598-022-08322-w] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 02/22/2022] [Indexed: 11/28/2022] Open
Abstract
Seizure prediction might be the solution to tackle the apparent unpredictability of seizures in patients with drug-resistant epilepsy, which comprise about a third of all patients with epilepsy. Designing seizure prediction models involves defining the pre-ictal period, a transition stage between inter-ictal brain activity and the seizure discharge. This period is typically a fixed interval, with some recent studies reporting the evaluation of different patient-specific pre-ictal intervals. Recently, researchers have aimed to determine the pre-ictal period, a transition stage between regular brain activity and a seizure. Authors have been using deep learning models given the ability of such models to automatically perform pre-processing, feature extraction, classification, and handling temporal and spatial dependencies. As these approaches create black-box models, clinicians may not have sufficient trust to use them in high-stake decisions. By considering these problems, we developed an evolutionary seizure prediction model that identifies the best set of features while automatically searching for the pre-ictal period and accounting for patient comfort. This methodology provides patient-specific interpretable insights, which might contribute to a better understanding of seizure generation processes and explain the algorithm's decisions. We tested our methodology on 238 seizures and 3687 h of continuous data, recorded on scalp recordings from 93 patients with several types of focal and generalised epilepsies. We compared the results with a seizure surrogate predictor and obtained a performance above chance for 32% patients. We also compared our results with a control method based on the standard machine learning pipeline (pre-processing, feature extraction, classifier training, and post-processing), where the control marginally outperformed our approach by validating 35% of the patients. In total, 54 patients performed above chance for at least one method: our methodology or the control one. Of these 54 patients, 21 ([Formula: see text]38%) were solely validated by our methodology, while 24 ([Formula: see text]44%) were only validated by the control method. These findings may evidence the need for different methodologies concerning different patients.
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Affiliation(s)
- Mauro Pinto
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal.
| | - Tiago Coelho
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
| | - Adriana Leal
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
| | - Fábio Lopes
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
- Epilepsy Center, Department Neurosurgery, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - António Dourado
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
| | - Pedro Martins
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
| | - César Teixeira
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
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Singh K, Malhotra J. Two-layer LSTM network-based prediction of epileptic seizures using EEG spectral features. COMPLEX INTELL SYST 2022. [DOI: 10.1007/s40747-021-00627-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
AbstractEpilepsy is a chronic nervous disorder, which disturbs the normal daily routine of an epileptic patient due to sudden seizure onset. In this era of smart healthcare, automated seizure prediction techniques could assist the patients, their family, and medical personnel to control and manage these seizures. This paper proposes a spectral feature-based two-layer LSTM network model for automatic prediction of epileptic seizures using long-term multichannel EEG signals. This model makes use of spectral power and mean spectrum amplitude features of delta, theta, alpha, beta, and gamma bands of 23-channel EEG spectrum for this task. Initially, the proposed single-layer and two-layer LSTM models have been evaluated for EEG segments having durations in the range of 5–50 s for 24 epileptic subjects, out of which EEG segments of 30 s duration are found to be useful for accurate seizure prediction using two-layer LSTM model. Afterwards, to validate the performance of this classifier, the spectral features of 30 s duration EEG segments are fed to random forest, decision tree, k-nearest neighbour, support vector machine, and naive Bayes classifiers, which are empowered with grid search-based parameter estimation. Finally, the iterative simulation results and comparison with recently published existing techniques firmly reveal that the proposed two-layer LSTM model with EEG spectral features is an effective technique for accurately predicting seizures in real time with an average classification accuracy of 98.14%, average sensitivity of 98.51%, and average specificity of 97.78%, thereby enabling the epileptic patients to have a better quality of life.
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Cherian R, Kanaga EG. Theoretical and Methodological Analysis of EEG based Seizure Detection and Prediction: An Exhaustive Review. J Neurosci Methods 2022; 369:109483. [DOI: 10.1016/j.jneumeth.2022.109483] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 01/13/2022] [Accepted: 01/13/2022] [Indexed: 02/07/2023]
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Song Z, Deng B, Wang J, Yi G, Yue W. Epileptic seizure detection using brain-rhythmic recurrence biomarkers and ONASNet-based transfer learning. IEEE Trans Neural Syst Rehabil Eng 2022; 30:979-989. [DOI: 10.1109/tnsre.2022.3165060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Automatic Diagnosis of Epileptic Seizures in EEG Signals Using Fractal Dimension Features and Convolutional Autoencoder Method. BIG DATA AND COGNITIVE COMPUTING 2021. [DOI: 10.3390/bdcc5040078] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
This paper proposes a new method for epileptic seizure detection in electroencephalography (EEG) signals using nonlinear features based on fractal dimension (FD) and a deep learning (DL) model. Firstly, Bonn and Freiburg datasets were used to perform experiments. The Bonn dataset consists of binary and multi-class classification problems, and the Freiburg dataset consists of two-class EEG classification problems. In the preprocessing step, all datasets were prepossessed using a Butterworth band pass filter with 0.5–60 Hz cut-off frequency. Then, the EEG signals of the datasets were segmented into different time windows. In this section, dual-tree complex wavelet transform (DT-CWT) was used to decompose the EEG signals into the different sub-bands. In the following section, in order to feature extraction, various FD techniques were used, including Higuchi (HFD), Katz (KFD), Petrosian (PFD), Hurst exponent (HE), detrended fluctuation analysis (DFA), Sevcik, box counting (BC), multiresolution box-counting (MBC), Margaos-Sun (MSFD), multifractal DFA (MF-DFA), and recurrence quantification analysis (RQA). In the next step, the minimum redundancy maximum relevance (mRMR) technique was used for feature selection. Finally, the k-nearest neighbors (KNN), support vector machine (SVM), and convolutional autoencoder (CNN-AE) were used for the classification step. In the classification step, the K-fold cross-validation with k = 10 was employed to demonstrate the effectiveness of the classifier methods. The experiment results show that the proposed CNN-AE method achieved an accuracy of 99.736% and 99.176% for the Bonn and Freiburg datasets, respectively.
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Wang Z, Yang J, Wu H, Zhu J, Sawan M. Power efficient refined seizure prediction algorithm based on an enhanced benchmarking. Sci Rep 2021; 11:23498. [PMID: 34873202 PMCID: PMC8648730 DOI: 10.1038/s41598-021-02798-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 11/22/2021] [Indexed: 11/18/2022] Open
Abstract
Deep learning techniques have led to significant advancements in seizure prediction research. However, corresponding used benchmarks are not uniform in published results. Moreover, inappropriate training and evaluation processes used in various work create overfitted models, making prediction performance fluctuate or unreliable. In this study, we analyzed the various data preparation methods, dataset partition methods in related works, and explained the corresponding impacts to the prediction algorithms. Then we applied a robust processing procedure that considers the appropriate sampling parameters and the leave-one-out cross-validation method to avoid possible overfitting and provide prerequisites for ease benchmarking. Moreover, a deep learning architecture takes advantage of a one-dimension convolutional neural network and a bi-directional long short-term memory network is proposed for seizure prediction. The architecture achieves 77.6% accuracy, 82.7% sensitivity, and 72.4% specificity, and it outperforms the indicators of other prior-art works. The proposed model is also hardware friendly; it has 6.274 k parameters and requires only 12.825 M floating-point operations, which is advantageous for memory and power constrained device implementations.
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Affiliation(s)
- Ziyu Wang
- Cutting-Edge Net of Biomedical Research and INnovation (CenBRAIN), School of Engineering, Westlake University, Hangzhou, Zhejiang, China
| | - Jie Yang
- Cutting-Edge Net of Biomedical Research and INnovation (CenBRAIN), School of Engineering, Westlake University, Hangzhou, Zhejiang, China.
| | - Hemmings Wu
- Department of Neurosurgery, Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
| | - Junming Zhu
- Department of Neurosurgery, Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
| | - Mohamad Sawan
- Cutting-Edge Net of Biomedical Research and INnovation (CenBRAIN), School of Engineering, Westlake University, Hangzhou, Zhejiang, China.
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Doshi R, Sankar AR, Nagaraj K, Vazhayil V, Nagaraj C, Rao M. EEG Driven Autonomous Injection System For An Epileptic Neuroimaging Application. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2021; 2021:1480-1486. [PMID: 34891565 DOI: 10.1109/embc46164.2021.9629573] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Seizure episodes are frequently observed for adults and children suffering from medically refractory epilepsy and the events remain debilitating unless treated with a more comprehensive approach. Ictal perfusion studies with single-photon emission computed tomography (SPECT) is one of the non invasive imaging modality that has been extensively used to adequately localize the seizure focus. Current practices include the tracer injection within a short time interval at the onset of seizure to generate desirable SPECT scan quality with accurate information on foci region. However, the onset of a seizure is a highly unpredictable event and also with added subclinical events, the overall procedure makes it difficult to administer the tracer manually within the ideal time frame.Hence a complete autonomous injection of radioactive tracer element without manual intervention is expected to offer a highly accurate epileptical focus region and aids in further management of the patient. Electroencephalogram (EEG) physiological signals in the preictal phase contain sufficient indicators to predict the seizure event. The proposed injection system works on the seizure prediction model from the EEG signals to release the dosage, making the system completely autonomous in action. The accuracy of the prediction model based on the publicly available seizure embedded EEG datasets was designed to achieve 94% accuracy, and the model was deployed on an edge system. The syringe based injection system was characterized to emulate dosage release action with minimum volumetric error, and low injection time, on predicting seizure Ictal event from the EEG signal. The proposed system is a step towards developing an autonomous injection system for epileptic neuroimaging applications in hospital settings.Clinical relevance- Autonomous injection of tracer dosage for obtaining accurate and high quality Ictal SPECT scan results is preferred over the manual operation in clinical and hospital residential settings as a part of pre-surgical evaluations. The EEG signal based early prediction of seizure ensures adequate time for radioactive tracer element to reach the brain cells and eventually helps to accurately localize the onset region of seizure in the brain. The EEG driven automated injection system for the noninvasive Ictal SPECT method is clinically important as a pre-surgical evaluation in MRI negative or discordant cases for further surgical actions.
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Bhattacharya A, Baweja T, Karri SPK. Epileptic Seizure Prediction Using Deep Transformer Model. Int J Neural Syst 2021; 32:2150058. [PMID: 34720065 DOI: 10.1142/s0129065721500581] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The electroencephalogram (EEG) is the most promising and efficient technique to study epilepsy and record all the electrical activity going in our brain. Automated screening of epilepsy through data-driven algorithms reduces the manual workload of doctors to diagnose epilepsy. New algorithms are biased either towards signal processing or deep learning, which holds subjective advantages and disadvantages. The proposed pipeline is an end-to-end automated seizure prediction framework with a Fourier transform feature extraction and deep learning-based transformer model, a blend of signal processing and deep learning - this imbibes the potential features to automatically identify the attentive regions in EEG signals for effective screening. The proposed pipeline has demonstrated superior performance on the benchmark dataset with average sensitivity and false-positive rate per hour (FPR/h) as 98.46%, 94.83% and 0.12439, 0, respectively. The proposed work shows great results on the benchmark datasets and a big potential for clinics as a support system with medical experts monitoring the patients.
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Affiliation(s)
- Abhijeet Bhattacharya
- Electrical and Electronics Engineering, Bharati Vidyapeeth's College of Engineering, A-4 Block, Baba Ramdev Marg, Shiva Enclave, Paschim Vihar, New Delhi, 110063, India
| | - Tanmay Baweja
- Electrical and Electronics Engineering, Bharati Vidyapeeth's College of Engineering, A-4 Block, Baba Ramdev Marg, Shiva Enclave, Paschim Vihar, New Delhi, 110063, India
| | - S P K Karri
- Department of Electrical Engineering, National Institute of Technology, Andhra Pradesh, Tadepalligudem - 534101, India
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Wang X, Zhang G, Wang Y, Yang L, Liang Z, Cong F. One-Dimensional Convolutional Neural Networks Combined with Channel Selection Strategy for Seizure Prediction Using Long-Term Intracranial EEG. Int J Neural Syst 2021; 32:2150048. [PMID: 34635034 DOI: 10.1142/s0129065721500489] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Seizure prediction using intracranial electroencephalogram (iEEG) has attracted an increasing attention during recent years. iEEG signals are commonly recorded in the form of multiple channels. Many previous studies generally used the iEEG signals of all channels to predict seizures, ignoring the consideration of channel selection. In this study, a method of one-dimensional convolutional neural networks (1D-CNN) combined with channel selection strategy was proposed for seizure prediction. First, we used 30-s sliding windows to segment the raw iEEG signals. Then, the 30-s iEEG segments, which were in three channel forms (single channel, channels only from seizure onset or free zone and all channels from seizure onset and free zones), were used as the inputs of 1D-CNN for classification, and the patient-specific model was trained. Finally, the channel form with the best classification was selected for each patient. The proposed method was evaluated on the Freiburg Hospital iEEG dataset. In the situation of seizure occurrence period (SOP) of 30[Formula: see text]min and seizure prediction horizon (SPH) of 5[Formula: see text]min, 98.60[Formula: see text] accuracy, 98.85[Formula: see text] sensitivity and 0.01/h false prediction rate (FPR) were achieved. In the situation of SOP of 60[Formula: see text]min and SPH of 5[Formula: see text]min, 98.32[Formula: see text] accuracy, 98.48[Formula: see text] sensitivity and 0.01/h FPR were attained. Compared with the many existing methods using the same iEEG dataset, our method showed a better performance.
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Affiliation(s)
- Xiaoshuang Wang
- School of Biomedical Engineering, Faculty of Electronic Information and Electrical Engineering, Dalian University of Technology, Dalian 116024, P. R. China.,Faculty of Information Technology, University of Jyväskylä, Jyväskylä 40014, Finland
| | - Guanghui Zhang
- School of Biomedical Engineering, Faculty of Electronic Information and Electrical Engineering, Dalian University of Technology, Dalian 116024, P. R. China.,Faculty of Information Technology, University of Jyväskylä, Jyväskylä 40014, Finland
| | - Ying Wang
- Department of Neurology and Psychiatry, First Affiliated Hospital, DaLian Medical University, Dalian, P. R. China
| | - Lin Yang
- Department of Neurology and Psychiatry, First Affiliated Hospital, DaLian Medical University, Dalian, P. R. China
| | - Zhanhua Liang
- Department of Neurology and Psychiatry, First Affiliated Hospital, DaLian Medical University, Dalian, P. R. China
| | - Fengyu Cong
- School of Biomedical Engineering, Faculty of Electronic Information and Electrical Engineering, Dalian University of Technology, Dalian 116024, P. R. China.,Faculty of Information Technology, University of Jyväskylä, Jyväskylä 40014, Finland.,School of Artificial Intelligence, Faculty of Electronic Information and Electrical Engineering, Dalian University of Technology, Dalian 116024, P. R. China.,Key Laboratory of Integrated Circuit and Biomedical Electronic System, Liaoning Province Dalian University of Technology, Dalian, P. R. China
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45
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Singh K, Malhotra J. Deep learning based smart health monitoring for automated prediction of epileptic seizures using spectral analysis of scalp EEG. Phys Eng Sci Med 2021; 44:1161-1173. [PMID: 34468965 DOI: 10.1007/s13246-021-01052-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2021] [Accepted: 08/27/2021] [Indexed: 11/25/2022]
Abstract
Being one of the most prevalent neurological disorders, epilepsy affects the lives of patients through the infrequent occurrence of spontaneous seizures. These seizures can result in serious injuries or unexpected deaths in individuals due to accidents. So, there exists a crucial need for an automatic prediction of epileptic seizures to alert the patients well before the onset of seizures, enabling them to have a healthier quality of life. In this era, the Internet of Things (IoT) technologies are being used in a cloud-fog integrated environment to address such healthcare challenges using deep learning approaches. The present paper also proposes a smart health monitoring approach for automated prediction of epileptic seizures using deep learning-based spectral analysis of EEG signals. This approach processes EEG signals using filtering, segmentation into short duration segments and spectral-domain transformation. These signals are then analysed spectrally by separating them into several spectral bands, such as delta, theta, alpha, beta, and sub-bands of gamma. Furthermore, the mean spectral amplitude and spectral power features are retrieved from each spectral band to characterize various seizure states, which are fed to the proposed LSTM and CNN models. The results of the proposed CNN model show a maximum accuracy of 98.3% and 97.4% to obtain a binary classification of preictal and interictal seizure states for two different spectral band combinations respectively. Thus, the proposed CNN architecture accompanied by spectral analysis of EEG signals provides a viable method for reliable and real-time prediction of epileptic seizures.
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Affiliation(s)
- Kuldeep Singh
- Department of Electronics Technology, Guru Nanak Dev University, Amritsar, India.
| | - Jyoteesh Malhotra
- Department of Engineering & Technology, Guru Nanak Dev University, Regional Campus, Jalandhar, India
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Patient-specific method of sleep electroencephalography using wavelet packet transform and Bi-LSTM for epileptic seizure prediction. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102963] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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Ma M, Cheng Y, Wei X, Chen Z, Zhou Y. Research on epileptic EEG recognition based on improved residual networks of 1-D CNN and indRNN. BMC Med Inform Decis Mak 2021; 21:100. [PMID: 34330248 PMCID: PMC8323263 DOI: 10.1186/s12911-021-01438-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2021] [Accepted: 02/15/2021] [Indexed: 11/10/2022] Open
Abstract
Background Epilepsy is one of the diseases of the nervous system, which has a large population in the world. Traditional diagnosis methods mostly depended on the professional neurologists’ reading of the electroencephalogram (EEG), which was time-consuming, inefficient, and subjective. In recent years, automatic epilepsy diagnosis of EEG by deep learning had attracted more and more attention. But the potential of deep neural networks in seizure detection had not been fully developed. Methods In this article, we used a one-dimensional convolutional neural network (1-D CNN) to replace the residual network architecture’s traditional convolutional neural network (CNN). Moreover, we combined the Independent recurrent neural network (indRNN) and CNN to form a new residual network architecture-independent convolutional recurrent neural network (RCNN). Our model can achieve an automatic diagnosis of epilepsy EEG. Firstly, the important features of EEG were learned by using the residual network architecture of 1-D CNN. Then the relationship between the sequences were learned by using the recurrent neural network. Finally, the model outputted the classification results. Results On the small sample data sets of Bonn University, our method was superior to the baseline methods and achieved 100% classification accuracy, 100% classification specificity. For the noisy real-world data, our method also exhibited powerful performance. Conclusion The model we proposed can quickly and accurately identify the different periods of EEG in an ideal condition and the real-world condition. The model can provide automatic detection capabilities for clinical epilepsy EEG detection. We hoped to provide a positive significance for the prediction of epileptic seizures EEG.
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Affiliation(s)
- Mengnan Ma
- School of Biomedical Engineering, Sun Yat-sen University, No.132 Waihuan East Road, Guangzhou, 510006, China.,Department of Medical Informatics, Zhongshan School of Medicine, Sun Yat-sen University, No.74 Zhongshan 2nd Road, Guangzhou, 510080, China
| | - Yinlin Cheng
- School of Biomedical Engineering, Sun Yat-sen University, No.132 Waihuan East Road, Guangzhou, 510006, China.,Department of Medical Informatics, Zhongshan School of Medicine, Sun Yat-sen University, No.74 Zhongshan 2nd Road, Guangzhou, 510080, China
| | - Xiaoyan Wei
- Minister of Science, Education and Data Management Department, Guangzhou Women and Children's Medical Center, National Children's Medical Center for South Central Region, Guangzhou Medical University, No.9 Jinsui Road, Guangzhou, 510623, China
| | - Ziyi Chen
- Department of Neurology, First Affiliated Hospital, Sun Yat-sen University, No.58 Zhongshan 2nd Road, Guangzhou, 510080, China
| | - Yi Zhou
- Department of Medical Informatics, Zhongshan School of Medicine, Sun Yat-sen University, No.74 Zhongshan 2nd Road, Guangzhou, 510080, China. .,Key Laboratory of Tropical Disease Control (Sun Yat-sen University), Ministry of Education, No.74 Zhongshan 2nd Road, Guangzhou, 510080, China.
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An epileptic seizure prediction model based on a time-wise attention simulation module and a pretrained ResNet. Methods 2021; 202:117-126. [PMID: 34274447 DOI: 10.1016/j.ymeth.2021.07.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2021] [Revised: 07/10/2021] [Accepted: 07/12/2021] [Indexed: 11/23/2022] Open
Abstract
Epilepsy is a neurological disorder that affects approximately 1% of the world's populations. Epilepsy prediction has been of great interest as it can identify and warn of an upcoming seizure, and to reduce the burden of the unpredictability of seizures. In this paper, we proposed a new seizure prediction model, TASM_ResNet, based on a time-wise attention simulation module and a pre-trained ResNet, using intracranial EEG signals. The simulation module with a time-wise attention was designed to convert EEG data into image like data and extract temporal features from raw data. Pre-trained ResNet was applied to reduce the amount of training data without initial training. Moreover, since the data is extremely imbalanced, we used an improved focal loss (FL) instead of the cross-entropy loss and investigated the optimal parameters for FL. Compared with a state-of-art CNN model, our proposed model achieved a better average AUC of 0.877. Moreover, our results demonstrated that EEG signals can be migrated to the image network which was pre-trained on large data set through a simulation module.
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Zhao S, Yang J, Sawan M. Energy-Efficient Neural Network for Epileptic Seizure Prediction. IEEE Trans Biomed Eng 2021; 69:401-411. [PMID: 34242159 DOI: 10.1109/tbme.2021.3095848] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Seizure prediction for drug-refractory epilepsy patients can improve their quality of life, reduce their anxiety, and help them take the necessary precautions. Nowadays, numerous deep learning algorithms have been proposed to predict seizure onset and obtain better performance than traditional machine learning methods. However, these methods require a large set of parameters and large hardware resources; they also have high energy consumption. Therefore, these methods cannot be implemented on compact, low-power wearable, or implantable medical devices. The devices should operate on a real-time basis to continually inform the epileptic patients. In this paper, we describe energy-efficient and hardware-friendly methods to predict the epileptic seizures. A model of only 45 kB was obtained by the neural architecture search and was evaluated across three datasets. The overall accuracy, sensitivity, false prediction rate, and area under receiver operating characteristic curve were 99.53%, 99.81%, 0.005/h, 1 and 93.60%, 93.48%, 0.063/h, 0.977 and 86.86%, 85.19%, 0.116/h, 0.933, respectively, for the CHB-MIT scalp, the AES and Melbourne University intracranial electroencephalography (EEG) datasets. This model was further reduced with network pruning, quantization, and compact neural networks. The performances for the model sizes less than 50 kB for scalp EEG data and less than 10 kB for intracranial EEG data outperformed all the other models of similar model sizes. In particular, the energy consumption estimation was less than 10 mJ per inference for scalp EEG signal and less than 0.5 mJ per inference for intracranial EEG signal, which meet the requirements for low-power wearable and implantable devices, respectively.
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Shoeibi A, Khodatars M, Ghassemi N, Jafari M, Moridian P, Alizadehsani R, Panahiazar M, Khozeimeh F, Zare A, Hosseini-Nejad H, Khosravi A, Atiya AF, Aminshahidi D, Hussain S, Rouhani M, Nahavandi S, Acharya UR. Epileptic Seizures Detection Using Deep Learning Techniques: A Review. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:5780. [PMID: 34072232 PMCID: PMC8199071 DOI: 10.3390/ijerph18115780] [Citation(s) in RCA: 94] [Impact Index Per Article: 31.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/21/2021] [Revised: 05/14/2021] [Accepted: 05/15/2021] [Indexed: 02/06/2023]
Abstract
A variety of screening approaches have been proposed to diagnose epileptic seizures, using electroencephalography (EEG) and magnetic resonance imaging (MRI) modalities. Artificial intelligence encompasses a variety of areas, and one of its branches is deep learning (DL). Before the rise of DL, conventional machine learning algorithms involving feature extraction were performed. This limited their performance to the ability of those handcrafting the features. However, in DL, the extraction of features and classification are entirely automated. The advent of these techniques in many areas of medicine, such as in the diagnosis of epileptic seizures, has made significant advances. In this study, a comprehensive overview of works focused on automated epileptic seizure detection using DL techniques and neuroimaging modalities is presented. Various methods proposed to diagnose epileptic seizures automatically using EEG and MRI modalities are described. In addition, rehabilitation systems developed for epileptic seizures using DL have been analyzed, and a summary is provided. The rehabilitation tools include cloud computing techniques and hardware required for implementation of DL algorithms. The important challenges in accurate detection of automated epileptic seizures using DL with EEG and MRI modalities are discussed. The advantages and limitations in employing DL-based techniques for epileptic seizures diagnosis are presented. Finally, the most promising DL models proposed and possible future works on automated epileptic seizure detection are delineated.
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Affiliation(s)
- Afshin Shoeibi
- Faculty of Electrical Engineering, Biomedical Data Acquisition Lab (BDAL), K. N. Toosi University of Technology, Tehran 1631714191, Iran;
- Computer Engineering Department, Ferdowsi University of Mashhad, Mashhad 9177948974, Iran; (D.A.); (M.R.)
| | | | - Navid Ghassemi
- Faculty of Electrical Engineering, Biomedical Data Acquisition Lab (BDAL), K. N. Toosi University of Technology, Tehran 1631714191, Iran;
- Computer Engineering Department, Ferdowsi University of Mashhad, Mashhad 9177948974, Iran; (D.A.); (M.R.)
| | - Mahboobeh Jafari
- Electrical and Computer Engineering Faculty, Semnan University, Semnan 3513119111, Iran;
| | - Parisa Moridian
- Faculty of Engineering, Science and Research Branch, Islamic Azad University, Tehran 1477893855, Iran;
| | - Roohallah Alizadehsani
- Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Waurn Ponds, VIC 3217, Australia; (R.A.); (F.K.); (A.K.); (S.N.)
| | - Maryam Panahiazar
- Institute for Computational Health Sciences, School of Medicine, University of California, San Francisco, CA 94143, USA;
| | - Fahime Khozeimeh
- Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Waurn Ponds, VIC 3217, Australia; (R.A.); (F.K.); (A.K.); (S.N.)
| | - Assef Zare
- Faculty of Electrical Engineering, Gonabad Branch, Islamic Azad University, Gonabad 6518115743, Iran;
| | - Hossein Hosseini-Nejad
- Faculty of Electrical and Computer Engineering, K. N. Toosi University of Technology, Tehran 1631714191, Iran;
| | - Abbas Khosravi
- Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Waurn Ponds, VIC 3217, Australia; (R.A.); (F.K.); (A.K.); (S.N.)
| | - Amir F. Atiya
- Department of Computer Engineering, Faculty of Engineering, Cairo University, Cairo 12613, Egypt;
| | - Diba Aminshahidi
- Computer Engineering Department, Ferdowsi University of Mashhad, Mashhad 9177948974, Iran; (D.A.); (M.R.)
| | - Sadiq Hussain
- System Administrator at Dibrugarh University, Assam 786004, India;
| | - Modjtaba Rouhani
- Computer Engineering Department, Ferdowsi University of Mashhad, Mashhad 9177948974, Iran; (D.A.); (M.R.)
| | - Saeid Nahavandi
- Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Waurn Ponds, VIC 3217, Australia; (R.A.); (F.K.); (A.K.); (S.N.)
| | - Udyavara Rajendra Acharya
- Department of Biomedical Engineering, School of Science and Technology, Singapore University of Social Sciences, Singapore 599494, Singapore;
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore 599489, Singapore
- Department of Bioinformatics and Medical Engineering, Taichung City 41354, Taiwan
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