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Gallego-Molina NJ, Ortiz A, Arco JE, Martinez-Murcia FJ, Woo WL. Unraveling Brain Synchronisation Dynamics by Explainable Neural Networks using EEG Signals: Application to Dyslexia Diagnosis. Interdiscip Sci 2024:10.1007/s12539-024-00634-x. [PMID: 38954232 DOI: 10.1007/s12539-024-00634-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Revised: 04/11/2024] [Accepted: 04/18/2024] [Indexed: 07/04/2024]
Abstract
The electrical activity of the neural processes involved in cognitive functions is captured in EEG signals, allowing the exploration of the integration and coordination of neuronal oscillations across multiple spatiotemporal scales. We have proposed a novel approach that combines the transformation of EEG signal into image sequences, considering cross-frequency phase synchronisation (CFS) dynamics involved in low-level auditory processing, with the development of a two-stage deep learning model for the detection of developmental dyslexia (DD). This deep learning model exploits spatial and temporal information preserved in the image sequences to find discriminative patterns of phase synchronisation over time achieving a balanced accuracy of up to 83%. This result supports the existence of differential brain synchronisation dynamics between typical and dyslexic seven-year-old readers. Furthermore, we have obtained interpretable representations using a novel feature mask to link the most relevant regions during classification with the cognitive processes attributed to normal reading and those corresponding to compensatory mechanisms found in dyslexia.
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Affiliation(s)
- Nicolás J Gallego-Molina
- Communications Engineering Department, University of Málaga, 29004, Málaga, Spain.
- Andalusian Research Institute in Data, Science and Computational Intelligence, 18010, Granada, Spain.
| | - Andrés Ortiz
- Communications Engineering Department, University of Málaga, 29004, Málaga, Spain
- Andalusian Research Institute in Data, Science and Computational Intelligence, 18010, Granada, Spain
| | - Juan E Arco
- Communications Engineering Department, University of Málaga, 29004, Málaga, Spain
- Department of Signal Theory, Networking and Communications, University of Granada, 18010, Granada, Spain
- Andalusian Research Institute in Data, Science and Computational Intelligence, 18010, Granada, Spain
| | - Francisco J Martinez-Murcia
- Department of Signal Theory, Networking and Communications, University of Granada, 18010, Granada, Spain
- Andalusian Research Institute in Data, Science and Computational Intelligence, 18010, Granada, Spain
- Research Centre for Information and Communication Technologies (CITIC-UGR), University of Granada, 18010, Granada, Spain
| | - Wai Lok Woo
- Department of Computer and Information Sciences, Northumbria University, Newcastle Upon Tyne, NE1 8ST, UK
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Theodoridou D, Tsiantis CO, Vlaikou AM, Chondrou V, Zakopoulou V, Christodoulides P, Oikonomou ED, Tzimourta KD, Kostoulas C, Tzallas AT, Tsamis KI, Peschos D, Sgourou A, Filiou MD, Syrrou M. Developmental Dyslexia: Insights from EEG-Based Findings and Molecular Signatures-A Pilot Study. Brain Sci 2024; 14:139. [PMID: 38391714 PMCID: PMC10887023 DOI: 10.3390/brainsci14020139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Revised: 01/25/2024] [Accepted: 01/26/2024] [Indexed: 02/24/2024] Open
Abstract
Developmental dyslexia (DD) is a learning disorder. Although risk genes have been identified, environmental factors, and particularly stress arising from constant difficulties, have been associated with the occurrence of DD by affecting brain plasticity and function, especially during critical neurodevelopmental stages. In this work, electroencephalogram (EEG) findings were coupled with the genetic and epigenetic molecular signatures of individuals with DD and matched controls. Specifically, we investigated the genetic and epigenetic correlates of key stress-associated genes (NR3C1, NR3C2, FKBP5, GILZ, SLC6A4) with psychological characteristics (depression, anxiety, and stress) often included in DD diagnostic criteria, as well as with brain EEG findings. We paired the observed brain rhythms with the expression levels of stress-related genes, investigated the epigenetic profile of the stress regulator glucocorticoid receptor (GR) and correlated such indices with demographic findings. This study presents a new interdisciplinary approach and findings that support the idea that stress, attributed to the demands of the school environment, may act as a contributing factor in the occurrence of the DD phenotype.
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Affiliation(s)
- Daniela Theodoridou
- Laboratory of Biology, Faculty of Medicine, School of Health Sciences, University of Ioannina, 45110 Ioannina, Greece
| | - Christos-Orestis Tsiantis
- Laboratory of Biology, Faculty of Medicine, School of Health Sciences, University of Ioannina, 45110 Ioannina, Greece
| | - Angeliki-Maria Vlaikou
- Biomedical Research Institute, Foundation for Research and Technology-Hellas (FORTH), 45110 Ioannina, Greece
- Laboratory of Biochemistry, Department of Biological Applications and Technology, School of Health Sciences, University of Ioannina, 45110 Ioannina, Greece
| | - Vasiliki Chondrou
- Laboratory of Biology, School of Science and Technology, Hellenic Open University, 26335 Patras, Greece
| | - Victoria Zakopoulou
- Department of Speech and Language Therapy, School of Health Sciences, University of Ioannina, 45110 Ioannina, Greece
| | - Pavlos Christodoulides
- Department of Speech and Language Therapy, School of Health Sciences, University of Ioannina, 45110 Ioannina, Greece
- Laboratory of Physiology, Faculty of Medicine, School of Health Sciences, University of Ioannina, 45110 Ioannina, Greece
| | - Emmanouil D Oikonomou
- Department of Informatics and Telecommunications, School of Informatics & Telecommunications, University of Ioannina, 47100 Arta, Greece
| | - Katerina D Tzimourta
- Department of Electrical and Computer Engineering, University of Western Macedonia, 50100 Kozani, Greece
| | - Charilaos Kostoulas
- Laboratory of Medical Genetics, Faculty of Medicine, School of Health Sciences, University of Ioannina, 45110 Ioannina, Greece
| | - Alexandros T Tzallas
- Department of Informatics and Telecommunications, School of Informatics & Telecommunications, University of Ioannina, 47100 Arta, Greece
| | - Konstantinos I Tsamis
- Laboratory of Physiology, Faculty of Medicine, School of Health Sciences, University of Ioannina, 45110 Ioannina, Greece
| | - Dimitrios Peschos
- Laboratory of Physiology, Faculty of Medicine, School of Health Sciences, University of Ioannina, 45110 Ioannina, Greece
| | - Argyro Sgourou
- Laboratory of Biology, School of Science and Technology, Hellenic Open University, 26335 Patras, Greece
| | - Michaela D Filiou
- Biomedical Research Institute, Foundation for Research and Technology-Hellas (FORTH), 45110 Ioannina, Greece
- Laboratory of Biochemistry, Department of Biological Applications and Technology, School of Health Sciences, University of Ioannina, 45110 Ioannina, Greece
| | - Maria Syrrou
- Laboratory of Biology, Faculty of Medicine, School of Health Sciences, University of Ioannina, 45110 Ioannina, Greece
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Guhan Seshadri N, Agrawal S, Kumar Singh B, Geethanjali B, Mahesh V, Pachori RB. EEG based classification of children with learning disabilities using shallow and deep neural network. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Xiao P, Ma K, Gu L, Huang Y, Zhang J, Duan Z, Wang G, Luo Z, Gan X, Yuan J. Inter-subject prediction of pediatric emergence delirium using feature selection and classification from spontaneous EEG signals. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Christou V, Miltiadous A, Tsoulos I, Karvounis E, Tzimourta KD, Tsipouras MG, Anastasopoulos N, Tzallas AT, Giannakeas N. Evaluating the Window Size's Role in Automatic EEG Epilepsy Detection. SENSORS (BASEL, SWITZERLAND) 2022; 22:9233. [PMID: 36501935 PMCID: PMC9739775 DOI: 10.3390/s22239233] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 11/16/2022] [Accepted: 11/24/2022] [Indexed: 06/17/2023]
Abstract
Electroencephalography is one of the most commonly used methods for extracting information about the brain's condition and can be used for diagnosing epilepsy. The EEG signal's wave shape contains vital information about the brain's state, which can be challenging to analyse and interpret by a human observer. Moreover, the characteristic waveforms of epilepsy (sharp waves, spikes) can occur randomly through time. Considering all the above reasons, automatic EEG signal extraction and analysis using computers can significantly impact the successful diagnosis of epilepsy. This research explores the impact of different window sizes on EEG signals' classification accuracy using four machine learning classifiers. The machine learning methods included a neural network with ten hidden nodes trained using three different training algorithms and the k-nearest neighbours classifier. The neural network training methods included the Broyden-Fletcher-Goldfarb-Shanno algorithm, the multistart method for global optimization problems, and a genetic algorithm. The current research utilized the University of Bonn dataset containing EEG data, divided into epochs having 50% overlap and window lengths ranging from 1 to 24 s. Then, statistical and spectral features were extracted and used to train the above four classifiers. The outcome from the above experiments showed that large window sizes with a length of about 21 s could positively impact the classification accuracy between the compared methods.
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Affiliation(s)
- Vasileios Christou
- Department of Informatics and Telecommunications, University of Ioannina, 47100 Arta, Greece
| | - Andreas Miltiadous
- Department of Informatics and Telecommunications, University of Ioannina, 47100 Arta, Greece
| | - Ioannis Tsoulos
- Department of Informatics and Telecommunications, University of Ioannina, 47100 Arta, Greece
| | - Evaggelos Karvounis
- Department of Informatics and Telecommunications, University of Ioannina, 47100 Arta, Greece
| | - Katerina D. Tzimourta
- Department of Informatics and Telecommunications, University of Ioannina, 47100 Arta, Greece
- Department of Electrical and Computer Engineering, Faculty of Engineering, University of Western Macedonia, 50100 Kozani, Greece
| | - Markos G. Tsipouras
- Department of Electrical and Computer Engineering, Faculty of Engineering, University of Western Macedonia, 50100 Kozani, Greece
| | | | - Alexandros T. Tzallas
- Department of Informatics and Telecommunications, University of Ioannina, 47100 Arta, Greece
| | - Nikolaos Giannakeas
- Department of Informatics and Telecommunications, University of Ioannina, 47100 Arta, Greece
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Wading corvus optimization based text generation using deep CNN and BiLSTM classifiers. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103969] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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Aspiotis V, Miltiadous A, Kalafatakis K, Tzimourta KD, Giannakeas N, Tsipouras MG, Peschos D, Glavas E, Tzallas AT. Assessing Electroencephalography as a Stress Indicator: A VR High-Altitude Scenario Monitored through EEG and ECG. SENSORS (BASEL, SWITZERLAND) 2022; 22:s22155792. [PMID: 35957348 PMCID: PMC9371026 DOI: 10.3390/s22155792] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Revised: 07/28/2022] [Accepted: 08/01/2022] [Indexed: 05/28/2023]
Abstract
Over the last decade, virtual reality (VR) has become an increasingly accessible commodity. Head-mounted display (HMD) immersive technologies allow researchers to simulate experimental scenarios that would be unfeasible or risky in real life. An example is extreme heights exposure simulations, which can be utilized in research on stress system mobilization. Until recently, electroencephalography (EEG)-related research was focused on mental stress prompted by social or mathematical challenges, with only a few studies employing HMD VR techniques to induce stress. In this study, we combine a state-of-the-art EEG wearable device and an electrocardiography (ECG) sensor with a VR headset to provoke stress in a high-altitude scenarios while monitoring EEG and ECG biomarkers in real time. A robust pipeline for signal clearing is implemented to preprocess the noise-infiltrated (due to movement) EEG data. Statistical and correlation analysis is employed to explore the relationship between these biomarkers with stress. The participant pool is divided into two groups based on their heart rate increase, where statistically important EEG biomarker differences emerged between them. Finally, the occipital-region band power changes and occipital asymmetry alterations were found to be associated with height-related stress and brain activation in beta and gamma bands, which correlates with the results of the self-reported Perceived Stress Scale questionnaire.
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Affiliation(s)
- Vasileios Aspiotis
- Human Computer Interaction Laboratory (HCILab), Department of Informatics and Telecommunications, University of Ioannina, Kostakioi, 47100 Arta, Greece; (V.A.); (A.M.); (K.K.); (K.D.T.); (N.G.); (E.G.)
- Faculty of Medicine, University of Ioannina, 45110 Ioannina, Greece;
| | - Andreas Miltiadous
- Human Computer Interaction Laboratory (HCILab), Department of Informatics and Telecommunications, University of Ioannina, Kostakioi, 47100 Arta, Greece; (V.A.); (A.M.); (K.K.); (K.D.T.); (N.G.); (E.G.)
| | - Konstantinos Kalafatakis
- Human Computer Interaction Laboratory (HCILab), Department of Informatics and Telecommunications, University of Ioannina, Kostakioi, 47100 Arta, Greece; (V.A.); (A.M.); (K.K.); (K.D.T.); (N.G.); (E.G.)
- Institute of Health Science Education, Barts and the London School of Medicine & Dentistry, Queen Mary University of London (Malta Campus), VCT 2520 Victoria, Malta
| | - Katerina D. Tzimourta
- Human Computer Interaction Laboratory (HCILab), Department of Informatics and Telecommunications, University of Ioannina, Kostakioi, 47100 Arta, Greece; (V.A.); (A.M.); (K.K.); (K.D.T.); (N.G.); (E.G.)
- Department of Electrical and Computer Engineering, Faculty of Engineering, University of Western Macedonia, 50100 Kozani, Greece;
| | - Nikolaos Giannakeas
- Human Computer Interaction Laboratory (HCILab), Department of Informatics and Telecommunications, University of Ioannina, Kostakioi, 47100 Arta, Greece; (V.A.); (A.M.); (K.K.); (K.D.T.); (N.G.); (E.G.)
| | - Markos G. Tsipouras
- Department of Electrical and Computer Engineering, Faculty of Engineering, University of Western Macedonia, 50100 Kozani, Greece;
| | - Dimitrios Peschos
- Faculty of Medicine, University of Ioannina, 45110 Ioannina, Greece;
| | - Euripidis Glavas
- Human Computer Interaction Laboratory (HCILab), Department of Informatics and Telecommunications, University of Ioannina, Kostakioi, 47100 Arta, Greece; (V.A.); (A.M.); (K.K.); (K.D.T.); (N.G.); (E.G.)
| | - Alexandros T. Tzallas
- Human Computer Interaction Laboratory (HCILab), Department of Informatics and Telecommunications, University of Ioannina, Kostakioi, 47100 Arta, Greece; (V.A.); (A.M.); (K.K.); (K.D.T.); (N.G.); (E.G.)
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