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Ding X, Jiang X, Zheng H, Shi H, Wang B, Chan S. MARes-Net: multi-scale attention residual network for jaw cyst image segmentation. Front Bioeng Biotechnol 2024; 12:1454728. [PMID: 39161348 PMCID: PMC11330813 DOI: 10.3389/fbioe.2024.1454728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Accepted: 07/25/2024] [Indexed: 08/21/2024] Open
Abstract
Jaw cyst is a fluid-containing cystic lesion that can occur in any part of the jaw and cause facial swelling, dental lesions, jaw fractures, and other associated issues. Due to the diversity and complexity of jaw images, existing deep-learning methods still have challenges in segmentation. To this end, we propose MARes-Net, an innovative multi-scale attentional residual network architecture. Firstly, the residual connection is used to optimize the encoder-decoder process, which effectively solves the gradient disappearance problem and improves the training efficiency and optimization ability. Secondly, the scale-aware feature extraction module (SFEM) significantly enhances the network's perceptual abilities by extending its receptive field across various scales, spaces, and channel dimensions. Thirdly, the multi-scale compression excitation module (MCEM) compresses and excites the feature map, and combines it with contextual information to obtain better model performance capabilities. Furthermore, the introduction of the attention gate module marks a significant advancement in refining the feature map output. Finally, rigorous experimentation conducted on the original jaw cyst dataset provided by Quzhou People's Hospital to verify the validity of MARes-Net architecture. The experimental data showed that precision, recall, IoU and F1-score of MARes-Net reached 93.84%, 93.70%, 86.17%, and 93.21%, respectively. Compared with existing models, our MARes-Net shows its unparalleled capabilities in accurately delineating and localizing anatomical structures in the jaw cyst image segmentation.
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Affiliation(s)
- Xiaokang Ding
- College of Mechanical Engineering, Quzhou University, Quzhou, China
| | - Xiaoliang Jiang
- College of Mechanical Engineering, Quzhou University, Quzhou, China
| | - Huixia Zheng
- Department of Stomatology, Quzhou People’s Hospital, The Quzhou Affiliated Hospital of Wenzhou Medical University, Quzhou, China
| | - Hualuo Shi
- College of Mechanical Engineering, Quzhou University, Quzhou, China
- School of Mechanical Engineering, Hangzhou Dianzi University, Hangzhou, China
| | - Ban Wang
- School of Mechanical Engineering, Hangzhou Dianzi University, Hangzhou, China
| | - Sixian Chan
- College of Computer Science and Technology, Zhejiang University of Technology, Hangzhou, China
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2
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Verma PK, Kaur J. Systematic Review of Retinal Blood Vessels Segmentation Based on AI-driven Technique. JOURNAL OF IMAGING INFORMATICS IN MEDICINE 2024; 37:1783-1799. [PMID: 38438695 PMCID: PMC11300804 DOI: 10.1007/s10278-024-01010-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 12/07/2023] [Accepted: 12/13/2023] [Indexed: 03/06/2024]
Abstract
Image segmentation is a crucial task in computer vision and image processing, with numerous segmentation algorithms being found in the literature. It has important applications in scene understanding, medical image analysis, robotic perception, video surveillance, augmented reality, image compression, among others. In light of this, the widespread popularity of deep learning (DL) and machine learning has inspired the creation of fresh methods for segmenting images using DL and ML models respectively. We offer a thorough analysis of this recent literature, encompassing the range of ground-breaking initiatives in semantic and instance segmentation, including convolutional pixel-labeling networks, encoder-decoder architectures, multi-scale and pyramid-based methods, recurrent networks, visual attention models, and generative models in adversarial settings. We study the connections, benefits, and importance of various DL- and ML-based segmentation models; look at the most popular datasets; and evaluate results in this Literature.
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Affiliation(s)
- Prem Kumari Verma
- Department of Computer Science and Engineering, Dr. B.R. Ambedkar National Institute of Technology, Jalandhar, 144008, Punjab, India.
| | - Jagdeep Kaur
- Department of Computer Science and Engineering, Dr. B.R. Ambedkar National Institute of Technology, Jalandhar, 144008, Punjab, India
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3
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Wang Z, Jia LV, Liang H. Partial class activation mapping guided graph convolution cascaded U-Net for retinal vessel segmentation. Comput Biol Med 2024; 178:108736. [PMID: 38878402 DOI: 10.1016/j.compbiomed.2024.108736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Revised: 05/17/2024] [Accepted: 06/08/2024] [Indexed: 07/24/2024]
Abstract
Accurate segmentation of retinal vessels in fundus images is of great importance for the diagnosis of numerous ocular diseases. However, due to the complex characteristics of fundus images, such as various lesions, image noise and complex background, the pixel features of some vessels have significant differences, which makes it easy for the segmentation networks to misjudge these vessels as noise, thus affecting the accuracy of the overall segmentation. Therefore, accurately segment retinal vessels in complex situations is still a great challenge. To address the problem, a partial class activation mapping guided graph convolution cascaded U-Net for retinal vessel segmentation is proposed. The core idea of the proposed network is first to use the partial class activation mapping guided graph convolutional network to eliminate the differences of local vessels and generate feature maps with global consistency, and subsequently these feature maps are further refined by segmentation network U-Net to achieve better segmentation results. Specifically, a new neural network block, called EdgeConv, is stacked multiple layers to form a graph convolutional network to realize the transfer an update of information from local to global, so as gradually enhance the feature consistency of graph nodes. Simultaneously, in an effort to suppress the noise information that may be transferred in graph convolution and thus reduce adverse effects of noise on segmentation results, the partial class activation mapping is introduced. The partial class activation mapping can guide the information transmission between graph nodes and effectively activate vessel feature through classification labels, thereby improving the accuracy of segmentation. The performance of the proposed method is validated on four different fundus image datasets. Compared with existing state-of-the-art methods, the proposed method can improve the integrity of vessel to a certain extent when the pixel features of local vessels are significantly different, caused by objective factors such as inappropriate illumination and exudates. Moreover, the proposed method shows robustness when segmenting complex retinal vessels.
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Affiliation(s)
- Zeyu Wang
- College of Computer and Information Sciences, Chongqing Normal University, Chongqing, 401331, China
| | - L V Jia
- College of Computer and Information Sciences, Chongqing Normal University, Chongqing, 401331, China; National Center for Applied Mathematics in Chongqing, Chongqing Normal University, Chongqing, 401331, China.
| | - Haocheng Liang
- College of Computer and Information Sciences, Chongqing Normal University, Chongqing, 401331, China
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4
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Bao F, Zhao Y, Zhang X, Zhang Y, Ning Y. SARC-UNet: A coronary artery segmentation method based on spatial attention and residual convolution. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2024; 255:108353. [PMID: 39096572 DOI: 10.1016/j.cmpb.2024.108353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Revised: 07/18/2024] [Accepted: 07/22/2024] [Indexed: 08/05/2024]
Abstract
BACKGROUND AND OBJECTIVE Coronary artery segmentation is a pivotal field that has received increasing attention in recent years. However, this task remains challenging because of the inhomogeneous distributions of the contrast agent and dim light, resulting in noise, vascular breakages and small vessel losses in the obtained segmentation results. METHODS To acquire better automatic blood vessel segmentation results for coronary angiography images, a UNet-based segmentation network (SARC-UNet) is constructed for coronary artery segmentation; this approach is based on residual convolution and spatial attention. First, we use the low-light image enhancement (LIME) approach to increase the contrast and clarity levels of coronary angiography images. Then, we design two residual convolution fusion modules (RCFM1 and RCFM2) that can successfully fuse the local and global information of coronary images while also capturing the characteristics of finer-grained blood vessels, hence preventing the loss of tiny blood vessels in the segmentation findings. Finally, using a cascaded waterfall structure, we create a new location-enhanced spatial attention (LESA) mechanism that can efficiently improve the long-distance dependencies between coronary vascular pixel features, eradicating vascular ruptures and noise in the segmentation results. RESULTS This article subjectively and objectively evaluates the experimental results. This method has performed well on five general indicators. Furthermore, it outperforms the connectivity indicators proposed in this article. This method can effectively segment blood vessels and obtain higher accuracy results. CONCLUSIONS Numerous experiments have shown that the suggested method outperforms the state-of-the-art approaches, particularly in terms of vessel connectivity and small blood vessel segmentation.
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Affiliation(s)
- Fangxun Bao
- School of Mathematics, Shandong University, Jinan, Shandong, 250100, China.
| | - Yongqi Zhao
- School of Mathematics, Shandong University, Jinan, Shandong, 250100, China
| | - Xinyue Zhang
- School of Mathematics, Shandong University, Jinan, Shandong, 250100, China
| | - Yunfeng Zhang
- School of Computer Science and Technology, Shandong University of Finance and Economics, Jinan, Shandong, 250014, China
| | - Yang Ning
- School of Computer Science and Technology, Shandong Jianzhu University, Jinan, Shandong, 250101, China
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5
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Matloob Abbasi M, Iqbal S, Aurangzeb K, Alhussein M, Khan TM. LMBiS-Net: A lightweight bidirectional skip connection based multipath CNN for retinal blood vessel segmentation. Sci Rep 2024; 14:15219. [PMID: 38956117 PMCID: PMC11219784 DOI: 10.1038/s41598-024-63496-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 05/29/2024] [Indexed: 07/04/2024] Open
Abstract
Blinding eye diseases are often related to changes in retinal structure, which can be detected by analysing retinal blood vessels in fundus images. However, existing techniques struggle to accurately segment these delicate vessels. Although deep learning has shown promise in medical image segmentation, its reliance on specific operations can limit its ability to capture crucial details such as the edges of the vessel. This paper introduces LMBiS-Net, a lightweight convolutional neural network designed for the segmentation of retinal vessels. LMBiS-Net achieves exceptional performance with a remarkably low number of learnable parameters (only 0.172 million). The network used multipath feature extraction blocks and incorporates bidirectional skip connections for the information flow between the encoder and decoder. In addition, we have optimised the efficiency of the model by carefully selecting the number of filters to avoid filter overlap. This optimisation significantly reduces training time and improves computational efficiency. To assess LMBiS-Net's robustness and ability to generalise to unseen data, we conducted comprehensive evaluations on four publicly available datasets: DRIVE, STARE, CHASE_DB1, and HRF The proposed LMBiS-Net achieves significant performance metrics in various datasets. It obtains sensitivity values of 83.60%, 84.37%, 86.05%, and 83.48%, specificity values of 98.83%, 98.77%, 98.96%, and 98.77%, accuracy (acc) scores of 97.08%, 97.69%, 97.75%, and 96.90%, and AUC values of 98.80%, 98.82%, 98.71%, and 88.77% on the DRIVE, STARE, CHEASE_DB, and HRF datasets, respectively. In addition, it records F1 scores of 83.43%, 84.44%, 83.54%, and 78.73% on the same datasets. Our evaluations demonstrate that LMBiS-Net achieves high segmentation accuracy (acc) while exhibiting both robustness and generalisability across various retinal image datasets. This combination of qualities makes LMBiS-Net a promising tool for various clinical applications.
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Affiliation(s)
- Mufassir Matloob Abbasi
- Department of Electrical Engineering, Abasyn University Islamabad Campus (AUIC), Islamabad, 44000, Pakistan
| | - Shahzaib Iqbal
- Department of Electrical Engineering, Abasyn University Islamabad Campus (AUIC), Islamabad, 44000, Pakistan.
| | - Khursheed Aurangzeb
- Department of Computer Engineering, College of Computer and Information Sciences, King Saud University, Riyadh, P. O. Box 51178, 11543, Saudi Arabia
| | - Musaed Alhussein
- Department of Computer Engineering, College of Computer and Information Sciences, King Saud University, Riyadh, P. O. Box 51178, 11543, Saudi Arabia
| | - Tariq M Khan
- School of Computer Science and Engineering, University of New South Wales, Sydney, NSW, Australia
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6
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Gao H, Qi M, Du B, Yang S, Li H, Wang T, Zhong W, Tang Y. An accurate semantic segmentation model for bean seedlings and weeds identification based on improved ERFnet. Sci Rep 2024; 14:12288. [PMID: 38811674 PMCID: PMC11136954 DOI: 10.1038/s41598-024-61981-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Accepted: 05/13/2024] [Indexed: 05/31/2024] Open
Abstract
In agricultural production activities, the growth of crops always accompanies the competition of weeds for nutrients and sunlight. In order to mitigate the adverse effects of weeds on yield, we apply semantic segmentation techniques to differentiate between seedlings and weeds, leading to precision weeding. The proposed EPAnet employs a loss function coupled with Cross-entropy loss and Dice loss to enhance attention to feature information. A multi-Decoder cooperative module based on ERFnet is designed to enhance information transfer during feature mapping. The SimAM is introduced to enhance position recognition. DO-CONV is used to replace the traditional convolution Feature Pyramid Networks (FPN) connection layer to integrate feature information, improving the model's performance on leaf edge processing, and is named FDPN. Moreover, the Overall Accuracy has been improved by 0.65%, the mean Intersection over Union (mIoU) by 1.91%, and the Frequency-Weighted Intersection over Union (FWIoU) by 1.19%. Compared to other advanced methods, EPAnet demonstrates superior image segmentation results in complex natural environments with uneven lighting, leaf interference, and shadows.
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Affiliation(s)
- Haozhang Gao
- Electrical and Information Engineering College, Jilin Agricultural Science and Technology University, Jilin, 132101, China
- School of Information and Control Engineering, Jilin Institute of Chemical Technology, Jilin, 132022, China
| | - Mingyang Qi
- Electrical and Information Engineering College, Jilin Agricultural Science and Technology University, Jilin, 132101, China
| | - Baoxia Du
- Electrical and Information Engineering College, Jilin Agricultural Science and Technology University, Jilin, 132101, China
- School of Information and Control Engineering, Jilin Institute of Chemical Technology, Jilin, 132022, China
| | - Shuang Yang
- Electrical and Information Engineering College, Jilin Agricultural Science and Technology University, Jilin, 132101, China
- School of Information and Control Engineering, Jilin Institute of Chemical Technology, Jilin, 132022, China
| | - Han Li
- Electrical and Information Engineering College, Jilin Agricultural Science and Technology University, Jilin, 132101, China
- School of Information and Control Engineering, Jilin Institute of Chemical Technology, Jilin, 132022, China
| | - Tete Wang
- R &D Department, Jilin Province Electric Innovation Information Technology Limited Company, Changchun, 130117, China
| | - Wenyu Zhong
- Electrical and Information Engineering College, Jilin Agricultural Science and Technology University, Jilin, 132101, China.
| | - You Tang
- Electrical and Information Engineering College, Jilin Agricultural Science and Technology University, Jilin, 132101, China.
- School of Information and Control Engineering, Jilin Institute of Chemical Technology, Jilin, 132022, China.
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7
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Li J, Gao G, Yang L, Liu Y. A retinal vessel segmentation network with multiple-dimension attention and adaptive feature fusion. Comput Biol Med 2024; 172:108315. [PMID: 38503093 DOI: 10.1016/j.compbiomed.2024.108315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2023] [Revised: 02/28/2024] [Accepted: 03/12/2024] [Indexed: 03/21/2024]
Abstract
The incidence of blinding eye diseases is highly correlated with changes in retinal morphology, and is clinically detected by segmenting retinal structures in fundus images. However, some existing methods have limitations in accurately segmenting thin vessels. In recent years, deep learning has made a splash in the medical image segmentation, but the lack of edge information representation due to repetitive convolution and pooling, limits the final segmentation accuracy. To this end, this paper proposes a pixel-level retinal vessel segmentation network with multiple-dimension attention and adaptive feature fusion. Here, a multiple dimension attention enhancement (MDAE) block is proposed to acquire more local edge information. Meanwhile, a deep guidance fusion (DGF) block and a cross-pooling semantic enhancement (CPSE) block are proposed simultaneously to acquire more global contexts. Further, the predictions of different decoding stages are learned and aggregated by an adaptive weight learner (AWL) unit to obtain the best weights for effective feature fusion. The experimental results on three public fundus image datasets show that proposed network could effectively enhance the segmentation performance on retinal blood vessels. In particular, the proposed method achieves AUC of 98.30%, 98.75%, and 98.71% on the DRIVE, CHASE_DB1, and STARE datasets, respectively, while the F1 score on all three datasets exceeded 83%. The source code of the proposed model is available at https://github.com/gegao310/VesselSeg-Pytorch-master.
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Affiliation(s)
- Jianyong Li
- College of Computer and Communication Engineering, Zhengzhou University of Light Industry, Zhengzhou, Henan Province, 450002, China
| | - Ge Gao
- School of Electrical and Information Engineering, Zhengzhou University, Zhengzhou, Henan Province, 450001, China.
| | - Lei Yang
- School of Electrical and Information Engineering, Zhengzhou University, Zhengzhou, Henan Province, 450001, China.
| | - Yanhong Liu
- School of Electrical and Information Engineering, Zhengzhou University, Zhengzhou, Henan Province, 450001, China
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8
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Prethija G, Katiravan J. EAMR-Net: A multiscale effective spatial and cross-channel attention network for retinal vessel segmentation. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2024; 21:4742-4761. [PMID: 38549347 DOI: 10.3934/mbe.2024208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/02/2024]
Abstract
Delineation of retinal vessels in fundus images is essential for detecting a range of eye disorders. An automated technique for vessel segmentation can assist clinicians and enhance the efficiency of the diagnostic process. Traditional methods fail to extract multiscale information, discard unnecessary information, and delineate thin vessels. In this paper, a novel residual U-Net architecture that incorporates multi-scale feature learning and effective attention is proposed to delineate the retinal vessels precisely. Since drop block regularization performs better than drop out in preventing overfitting, drop block was used in this study. A multi-scale feature learning module was added instead of a skip connection to learn multi-scale features. A novel effective attention block was proposed and integrated with the decoder block to obtain precise spatial and channel information. Experimental findings indicated that the proposed model exhibited outstanding performance in retinal vessel delineation. The sensitivities achieved for DRIVE, STARE, and CHASE_DB datasets were 0.8293, 0.8151 and 0.8084, respectively.
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Affiliation(s)
- G Prethija
- School of Computer Science and Engineering, Vellore Institute of Technology, Chennai 600127, India
| | - Jeevaa Katiravan
- Department of Information Technology, Velammal Engineering College, Chennai 600066, India
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9
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Sun K, Chen Y, Dong F, Wu Q, Geng J, Chen Y. Retinal vessel segmentation method based on RSP-SA Unet network. Med Biol Eng Comput 2024; 62:605-620. [PMID: 37964177 DOI: 10.1007/s11517-023-02960-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Accepted: 10/28/2023] [Indexed: 11/16/2023]
Abstract
Segmenting retinal vessels plays a significant role in the diagnosis of fundus disorders. However, there are two problems in the retinal vessel segmentation methods. First, fine-grained features of fine blood vessels are difficult to be extracted. Second, it is easy to lose track of the details of blood vessel edges. To solve the problems above, the Residual SimAM Pyramid-Spatial Attention Unet (RSP-SA Unet) is proposed, in which the encoding, decoding, and upsampling layers of the Unet are mainly improved. Firstly, the RSP structure proposed in this paper approximates a residual structure combined with SimAM and Pyramid Segmentation Attention (PSA), which is applied to the encoding and decoding parts to extract multi-scale spatial information and important features across dimensions at a finer level. Secondly, the spatial attention (SA) is used in the upsampling layer to perform multi-attention mapping on the input feature map, which could enhance the segmentation effect of small blood vessels with low contrast. Finally, the RSP-SA Unet is verified on the CHASE_DB1, DRIVE, and STARE datasets, and the segmentation accuracy (ACC) of the RSP-SA Unet could reach 0.9763, 0.9704, and 0.9724, respectively. Area under the ROC curve (AUC) could reach 0.9896, 0.9858, and 0.9906, respectively. The RSP-SA Unet overall performance is better than the comparison methods.
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Affiliation(s)
- Kun Sun
- The Higher Educational Key Laboratory for Measuring & Control Technology and Instrumentation of Heilongjiang Province, Harbin University of Science and Technology, Harbin, China
- Teaching Demonstration Center for Measurement and Control Technology and Instrumentation, National Experimental, Harbin University of Science and Technology, Harbin, China
| | - Yang Chen
- The Higher Educational Key Laboratory for Measuring & Control Technology and Instrumentation of Heilongjiang Province, Harbin University of Science and Technology, Harbin, China
- Teaching Demonstration Center for Measurement and Control Technology and Instrumentation, National Experimental, Harbin University of Science and Technology, Harbin, China
| | - Fuxuan Dong
- The Higher Educational Key Laboratory for Measuring & Control Technology and Instrumentation of Heilongjiang Province, Harbin University of Science and Technology, Harbin, China
- Teaching Demonstration Center for Measurement and Control Technology and Instrumentation, National Experimental, Harbin University of Science and Technology, Harbin, China
| | - Qing Wu
- The Higher Educational Key Laboratory for Measuring & Control Technology and Instrumentation of Heilongjiang Province, Harbin University of Science and Technology, Harbin, China.
- Teaching Demonstration Center for Measurement and Control Technology and Instrumentation, National Experimental, Harbin University of Science and Technology, Harbin, China.
- Heilongjiang Province Key Laboratory of Laser Spectroscopy Technology and Application, Harbin University of Science and Technology, Harbin, China.
| | - Jiameng Geng
- The Higher Educational Key Laboratory for Measuring & Control Technology and Instrumentation of Heilongjiang Province, Harbin University of Science and Technology, Harbin, China
- Teaching Demonstration Center for Measurement and Control Technology and Instrumentation, National Experimental, Harbin University of Science and Technology, Harbin, China
| | - Yinsheng Chen
- The Higher Educational Key Laboratory for Measuring & Control Technology and Instrumentation of Heilongjiang Province, Harbin University of Science and Technology, Harbin, China
- Teaching Demonstration Center for Measurement and Control Technology and Instrumentation, National Experimental, Harbin University of Science and Technology, Harbin, China
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10
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Bhimavarapu U, Chintalapudi N, Battineni G. Automatic Detection and Classification of Hypertensive Retinopathy with Improved Convolution Neural Network and Improved SVM. Bioengineering (Basel) 2024; 11:56. [PMID: 38247933 PMCID: PMC10813404 DOI: 10.3390/bioengineering11010056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 12/22/2023] [Accepted: 01/01/2024] [Indexed: 01/23/2024] Open
Abstract
Hypertensive retinopathy (HR) results from the microvascular retinal changes triggered by hypertension, which is the most common leading cause of preventable blindness worldwide. Therefore, it is necessary to develop an automated system for HR detection and evaluation using retinal images. We aimed to propose an automated approach to identify and categorize the various degrees of HR severity. A new network called the spatial convolution module (SCM) combines cross-channel and spatial information, and the convolution operations extract helpful features. The present model is evaluated using publicly accessible datasets ODIR, INSPIREVR, and VICAVR. We applied the augmentation to artificially increase the dataset of 1200 fundus images. The different HR severity levels of normal, mild, moderate, severe, and malignant are finally classified with the reduced time when compared to the existing models because in the proposed model, convolutional layers run only once on the input fundus images, which leads to a speedup and reduces the processing time in detecting the abnormalities in the vascular structure. According to the findings, the improved SVM had the highest detection and classification accuracy rate in the vessel classification with an accuracy of 98.99% and completed the task in 160.4 s. The ten-fold classification achieved the highest accuracy of 98.99%, i.e., 0.27 higher than the five-fold classification accuracy and the improved KNN classifier achieved an accuracy of 98.72%. When computation efficiency is a priority, the proposed model's ability to quickly recognize different HR severity levels is significant.
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Affiliation(s)
- Usharani Bhimavarapu
- Department of Computer Science and Engineering, Koneru Lakshmaiah Education Foundation, Vaddeswaram 522302, India
| | - Nalini Chintalapudi
- Clinical Research Centre, School of Medicinal and Health Products Sciences, University of Camerino, 62032 Camerino, Italy;
| | - Gopi Battineni
- Clinical Research Centre, School of Medicinal and Health Products Sciences, University of Camerino, 62032 Camerino, Italy;
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11
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Jiang Y, Chen J, Yan W, Zhang Z, Qiao H, Wang M. MAG-Net : Multi-fusion network with grouped attention for retinal vessel segmentation. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2024; 21:1938-1958. [PMID: 38454669 DOI: 10.3934/mbe.2024086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/09/2024]
Abstract
Retinal vessel segmentation plays a vital role in the clinical diagnosis of ophthalmic diseases. Despite convolutional neural networks (CNNs) excelling in this task, challenges persist, such as restricted receptive fields and information loss from downsampling. To address these issues, we propose a new multi-fusion network with grouped attention (MAG-Net). First, we introduce a hybrid convolutional fusion module instead of the original encoding block to learn more feature information by expanding the receptive field. Additionally, the grouped attention enhancement module uses high-level features to guide low-level features and facilitates detailed information transmission through skip connections. Finally, the multi-scale feature fusion module aggregates features at different scales, effectively reducing information loss during decoder upsampling. To evaluate the performance of the MAG-Net, we conducted experiments on three widely used retinal datasets: DRIVE, CHASE and STARE. The results demonstrate remarkable segmentation accuracy, specificity and Dice coefficients. Specifically, the MAG-Net achieved segmentation accuracy values of 0.9708, 0.9773 and 0.9743, specificity values of 0.9836, 0.9875 and 0.9906 and Dice coefficients of 0.8576, 0.8069 and 0.8228, respectively. The experimental results demonstrate that our method outperforms existing segmentation methods exhibiting superior performance and segmentation outcomes.
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Affiliation(s)
- Yun Jiang
- College of Computer Science and Engineering, Northwest Normal University, Lanzhou 730070, China
| | - Jie Chen
- College of Computer Science and Engineering, Northwest Normal University, Lanzhou 730070, China
| | - Wei Yan
- College of Computer Science and Engineering, Northwest Normal University, Lanzhou 730070, China
| | - Zequn Zhang
- College of Computer Science and Engineering, Northwest Normal University, Lanzhou 730070, China
| | - Hao Qiao
- College of Computer Science and Engineering, Northwest Normal University, Lanzhou 730070, China
| | - Meiqi Wang
- College of Computer Science and Engineering, Northwest Normal University, Lanzhou 730070, China
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12
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Mahapatra S, Agrawal S, Mishro PK, Panda R, Dora L, Pachori RB. A Review on Retinal Blood Vessel Enhancement and Segmentation Techniques for Color Fundus Photography. Crit Rev Biomed Eng 2024; 52:41-69. [PMID: 37938183 DOI: 10.1615/critrevbiomedeng.2023049348] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2023]
Abstract
The retinal image is a trusted modality in biomedical image-based diagnosis of many ophthalmologic and cardiovascular diseases. Periodic examination of the retina can help in spotting these abnormalities in the early stage. However, to deal with today's large population, computerized retinal image analysis is preferred over manual inspection. The precise extraction of the retinal vessel is the first and decisive step for clinical applications. Every year, many more articles are added to the literature that describe new algorithms for the problem at hand. The majority of the review article is restricted to a fairly small number of approaches, assessment indices, and databases. In this context, a comprehensive review of different vessel extraction methods is inevitable. It includes the development of a first-hand classification of these methods. A bibliometric analysis of these articles is also presented. The benefits and drawbacks of the most commonly used techniques are summarized. The primary challenges, as well as the scope of possible changes, are discussed. In order to make a fair comparison, numerous assessment indices are considered. The findings of this survey could provide a new path for researchers for further work in this domain.
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Affiliation(s)
- Sakambhari Mahapatra
- Department of Electronics and Telecommunication Engineering, Veer Surendra Sai University of Technology, Burla, India
| | - Sanjay Agrawal
- Department of Electronics and Telecommunication Engineering, Veer Surendra Sai University of Technology, Burla, India
| | - Pranaba K Mishro
- Department of Electronics and Telecommunication Engineering, Veer Surendra Sai University of Technology, Burla, India
| | - Rutuparna Panda
- Department of Electronics and Telecommunication Engineering, Veer Surendra Sai University of Technology, Burla, India
| | - Lingraj Dora
- Department of Electrical and Electronics Engineering, Veer Surendra Sai University of Technology, Burla, India
| | - Ram Bilas Pachori
- Department of Electrical Engineering, Indian Institute of Technology Indore, Indore, India
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13
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Li C, Li Z, Liu W. TDCAU-Net: retinal vessel segmentation using transformer dilated convolutional attention-based U-Net method. Phys Med Biol 2023; 69:015003. [PMID: 38052089 DOI: 10.1088/1361-6560/ad1273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Accepted: 12/05/2023] [Indexed: 12/07/2023]
Abstract
Retinal vessel segmentation plays a vital role in the medical field, facilitating the identification of numerous chronic conditions based on retinal vessel images. These conditions include diabetic retinopathy, hypertensive retinopathy, glaucoma, and others. Although the U-Net model has shown promising results in retinal vessel segmentation, it tends to struggle with fine branching and dense vessel segmentation. To further enhance the precision of retinal vessel segmentation, we propose a novel approach called transformer dilated convolution attention U-Net (TDCAU-Net), which builds upon the U-Net architecture with improved Transformer-based dilated convolution attention mechanisms. The proposed model retains the three-layer architecture of the U-Net network. The Transformer component enables the learning of contextual information for each pixel in the image, while the dilated convolution attention prevents information loss. The algorithm efficiently addresses several challenges to optimize blood vessel detection. The process starts with five-step preprocessing of the images, followed by chunking them into segments. Subsequently, the retinal images are fed into the modified U-Net network introduced in this paper for segmentation. The study employs eye fundus images from the DRIVE and CHASEDB1 databases for both training and testing purposes. Evaluation metrics are utilized to compare the algorithm's results with state-of-the-art methods. The experimental analysis on both databases demonstrates that the algorithm achieves high values of sensitivity, specificity, accuracy, and AUC. Specifically, for the first database, the achieved values are 0.8187, 0.9756, 0.9556, and 0.9795, respectively. For the second database, the corresponding values are 0.8243, 0.9836, 0.9738, and 0.9878, respectively. These results demonstrate that the proposed approach outperforms state-of-the-art methods, achieving higher performance on both datasets. The TDCAU-Net model presented in this study exhibits substantial capabilities in accurately segmenting fine branching and dense vessels. The segmentation performance of the network surpasses that of the U-Net algorithm and several mainstream methods.
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Affiliation(s)
- Chunyang Li
- School of Electronics and Information Engineering, University of Science and Technology Liaoning, Anshan, People's Republic of China
| | - Zhigang Li
- School of Electronics and Information Engineering, University of Science and Technology Liaoning, Anshan, People's Republic of China
| | - Weikang Liu
- School of Electronics and Information Engineering, University of Science and Technology Liaoning, Anshan, People's Republic of China
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14
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Liu R, Pu W, Nan H, Zou Y. Retina image segmentation using the three-path Unet model. Sci Rep 2023; 13:22579. [PMID: 38114637 PMCID: PMC10730848 DOI: 10.1038/s41598-023-50141-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 12/15/2023] [Indexed: 12/21/2023] Open
Abstract
Unsupervised image segmentation is a technique that divides an image into distinct regions or objects without prior labeling. This approach offers flexibility and adaptability to various types of image data. Particularly for large datasets, it eliminates the need for manual labeling, thereby it presents advantages in terms of time and labor costs. However, when applied to retinal image segmentation, challenges arise due to variations in data, presence of noise, and manual threshold adjustments, which can lead to over-segmentation or under-segmentation of small blood vessel boundaries and endpoints. In order to enhance the precision and accuracy of retinal image segmentation, we propose a novel image supervised segmentation network based on three-path Unet model.Firstly, the Haar wavelet transform is employed to extract high-frequency image information, which forms the foundation for the proposed HaarNet, a Unet-inspired architecture. Next, the HaarNet is integrated with the Unet and SegNet frameworks to develop a three-path Unet model, referred to as TP-Unet. Finally, the model is further refined into TP-Unet+AE+DSL by incorporating the advantages of auto-encoding (AE) and deep supervised learning (DSL) techniques, thereby enhancing the overall performance of the system. To evaluate the effectiveness of our proposed model, we conduct experiments using the DRIVE and CHASE public datasets. On the DRIVE dataset, our recommended model achieves a Dice coefficient of 0.8291 and a sensitivity index of 0.8184. These results significantly outperform the Unet model by [Formula: see text] and [Formula: see text], respectively. Furthermore, our model demonstrates excellent performance on the CHASE dataset, with a Dice coefficient of 0.8162, a sensitivity of 0.8242, and an accuracy of 0.9664. These metrics surpass the Unet model by [Formula: see text], [Formula: see text], and [Formula: see text], respectively. Our proposed model provides more accurate and reliable results for retinal vessel segmentation, which holds significant potential for assisting doctors in their diagnosis.
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Affiliation(s)
- Ruihua Liu
- School of Artificial Intelligence, Chongqing University of Technology, Chongqing, China.
| | - Wei Pu
- School of Artificial Intelligence, Chongqing University of Technology, Chongqing, China
- Chongqing Vocational College of Transportation, Chongqing, China
| | - Haoyu Nan
- School of Artificial Intelligence, Chongqing University of Technology, Chongqing, China.
- OPT Machine Vision Tech Co., Ltd., Guangdong, China.
| | - Yangyang Zou
- School of Artificial Intelligence, Chongqing University of Technology, Chongqing, China
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15
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Li P, Qiu Z, Zhan Y, Chen H, Yuan S. Multi-scale Bottleneck Residual Network for Retinal Vessel Segmentation. J Med Syst 2023; 47:102. [PMID: 37776409 DOI: 10.1007/s10916-023-01992-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Accepted: 08/30/2023] [Indexed: 10/02/2023]
Abstract
Precise segmentation of retinal vessels is crucial for the prevention and diagnosis of ophthalmic diseases. In recent years, deep learning has shown outstanding performance in retinal vessel segmentation. Many scholars are dedicated to studying retinal vessel segmentation methods based on color fundus images, but the amount of research works on Scanning Laser Ophthalmoscopy (SLO) images is very scarce. In addition, existing SLO image segmentation methods still have difficulty in balancing accuracy and model parameters. This paper proposes a SLO image segmentation model based on lightweight U-Net architecture called MBRNet, which solves the problems in the current research through Multi-scale Bottleneck Residual (MBR) module and attention mechanism. Concretely speaking, the MBR module expands the receptive field of the model at a relatively low computational cost and retains more detailed information. Attention Gate (AG) module alleviates the disturbance of noise so that the network can concentrate on vascular characteristics. Experimental results on two public SLO datasets demonstrate that by comparison to existing methods, the MBRNet has better segmentation performance with relatively few parameters.
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Affiliation(s)
- Peipei Li
- School of Computer Science and Technology, Hainan University, Haikou, 570228, China
| | - Zhao Qiu
- School of Computer Science and Technology, Hainan University, Haikou, 570228, China.
| | - Yuefu Zhan
- Affiliated maternal and child health hospital (Children's hospital) of Hainan medical university/Hainan Women and Children's Medical Center, Haikou, 570312, China.
| | - Huajing Chen
- Hainan Provincial Public Security Department, Haikou, 570203, China
| | - Sheng Yuan
- School of Computer Science and Technology, Hainan University, Haikou, 570228, China
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16
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Pham VN, Le DT, Bum J, Kim SH, Song SJ, Choo H. Discriminative-Region Multi-Label Classification of Ultra-Widefield Fundus Images. Bioengineering (Basel) 2023; 10:1048. [PMID: 37760150 PMCID: PMC10525847 DOI: 10.3390/bioengineering10091048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Revised: 09/01/2023] [Accepted: 09/04/2023] [Indexed: 09/29/2023] Open
Abstract
Ultra-widefield fundus image (UFI) has become a crucial tool for ophthalmologists in diagnosing ocular diseases because of its ability to capture a wide field of the retina. Nevertheless, detecting and classifying multiple diseases within this imaging modality continues to pose a significant challenge for ophthalmologists. An automated disease classification system for UFI can support ophthalmologists in making faster and more precise diagnoses. However, existing works for UFI classification often focus on a single disease or assume each image only contains one disease when tackling multi-disease issues. Furthermore, the distinctive characteristics of each disease are typically not utilized to improve the performance of the classification systems. To address these limitations, we propose a novel approach that leverages disease-specific regions of interest for the multi-label classification of UFI. Our method uses three regions, including the optic disc area, the macula area, and the entire UFI, which serve as the most informative regions for diagnosing one or multiple ocular diseases. Experimental results on a dataset comprising 5930 UFIs with six common ocular diseases showcase that our proposed approach attains exceptional performance, with the area under the receiver operating characteristic curve scores for each class spanning from 95.07% to 99.14%. These results not only surpass existing state-of-the-art methods but also exhibit significant enhancements, with improvements of up to 5.29%. These results demonstrate the potential of our method to provide ophthalmologists with valuable information for early and accurate diagnosis of ocular diseases, ultimately leading to improved patient outcomes.
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Affiliation(s)
- Van-Nguyen Pham
- Department of Electrical and Computer Engineering, Sungkyunkwan University, Suwon 16419, Republic of Korea;
| | - Duc-Tai Le
- College of Computing and Informatics, Sungkyunkwan University, Suwon 16419, Republic of Korea;
| | - Junghyun Bum
- Sungkyun AI Research Institute, Sungkyunkwan University, Suwon 16419, Republic of Korea;
| | - Seong Ho Kim
- Department of Ophthalmology, Kangbuk Samsung Hospital, School of Medicine, Sungkyunkwan University, Seoul 03181, Republic of Korea;
| | - Su Jeong Song
- Department of Ophthalmology, Kangbuk Samsung Hospital, School of Medicine, Sungkyunkwan University, Seoul 03181, Republic of Korea;
- Biomedical Institute for Convergence, Sungkyunkwan University, Suwon 16419, Republic of Korea
| | - Hyunseung Choo
- Department of Electrical and Computer Engineering, Sungkyunkwan University, Suwon 16419, Republic of Korea;
- College of Computing and Informatics, Sungkyunkwan University, Suwon 16419, Republic of Korea;
- Department of Superintelligence Engineering, Sungkyunkwan University, Suwon 16419, Republic of Korea
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17
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Ryu J, Rehman MU, Nizami IF, Chong KT. SegR-Net: A deep learning framework with multi-scale feature fusion for robust retinal vessel segmentation. Comput Biol Med 2023; 163:107132. [PMID: 37343468 DOI: 10.1016/j.compbiomed.2023.107132] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Revised: 05/12/2023] [Accepted: 06/04/2023] [Indexed: 06/23/2023]
Abstract
Retinal vessel segmentation is an important task in medical image analysis and has a variety of applications in the diagnosis and treatment of retinal diseases. In this paper, we propose SegR-Net, a deep learning framework for robust retinal vessel segmentation. SegR-Net utilizes a combination of feature extraction and embedding, deep feature magnification, feature precision and interference, and dense multiscale feature fusion to generate accurate segmentation masks. The model consists of an encoder module that extracts high-level features from the input images and a decoder module that reconstructs the segmentation masks by combining features from the encoder module. The encoder module consists of a feature extraction and embedding block that enhances by dense multiscale feature fusion, followed by a deep feature magnification block that magnifies the retinal vessels. To further improve the quality of the extracted features, we use a group of two convolutional layers after each DFM block. In the decoder module, we utilize a feature precision and interference block and a dense multiscale feature fusion block (DMFF) to combine features from the encoder module and reconstruct the segmentation mask. We also incorporate data augmentation and pre-processing techniques to improve the generalization of the trained model. Experimental results on three fundus image publicly available datasets (CHASE_DB1, STARE, and DRIVE) demonstrate that SegR-Net outperforms state-of-the-art models in terms of accuracy, sensitivity, specificity, and F1 score. The proposed framework can provide more accurate and more efficient segmentation of retinal blood vessels in comparison to the state-of-the-art techniques, which is essential for clinical decision-making and diagnosis of various eye diseases.
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Affiliation(s)
- Jihyoung Ryu
- Electronics and Telecommunications Research Institute, 176-11 Cheomdan Gwagi-ro, Buk-gu, Gwangju 61012, Republic of Korea.
| | - Mobeen Ur Rehman
- Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju 54896, Republic of Korea.
| | - Imran Fareed Nizami
- Department of Electrical Engineering, Bahria University, Islamabad, Pakistan.
| | - Kil To Chong
- Electronics and Telecommunications Research Institute, 176-11 Cheomdan Gwagi-ro, Buk-gu, Gwangju 61012, Republic of Korea; Advances Electronics and Information Research Center, Jeonbuk National University, Jeonju 54896, Republic of Korea.
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18
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Yang L, Zhai C, Liu Y, Yu H. CFHA-Net: A polyp segmentation method with cross-scale fusion strategy and hybrid attention. Comput Biol Med 2023; 164:107301. [PMID: 37573723 DOI: 10.1016/j.compbiomed.2023.107301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Revised: 07/10/2023] [Accepted: 07/28/2023] [Indexed: 08/15/2023]
Abstract
Colorectal cancer is a prevalent disease in modern times, with most cases being caused by polyps. Therefore, the segmentation of polyps has garnered significant attention in the field of medical image segmentation. In recent years, the variant network derived from the U-Net network has demonstrated a good segmentation effect on polyp segmentation challenges. In this paper, a polyp segmentation model, called CFHA-Net, is proposed, that combines a cross-scale feature fusion strategy and a hybrid attention mechanism. Inspired by feature learning, the encoder unit incorporates a cross-scale context fusion (CCF) module that performs cross-layer feature fusion and enhances the feature information of different scales. The skip connection is optimized by proposed triple hybrid attention (THA) module that aggregates spatial and channel attention features from three directions to improve the long-range dependence between features and help identify subsequent polyp lesion boundaries. Additionally, a dense-receptive feature fusion (DFF) module, which combines dense connections and multi-receptive field fusion modules, is added at the bottleneck layer to capture more comprehensive context information. Furthermore, a hybrid pooling (HP) module and a hybrid upsampling (HU) module are proposed to help the segmentation network acquire more contextual features. A series of experiments have been conducted on three typical datasets for polyp segmentation (CVC-ClinicDB, Kvasir-SEG, EndoTect) to evaluate the effectiveness and generalization of the proposed CFHA-Net. The experimental results demonstrate the validity and generalization of the proposed method, with many performance metrics surpassing those of related advanced segmentation networks. Therefore, proposed CFHA-Net could present a promising solution to the challenges of polyp segmentation in medical image analysis. The source code of proposed CFHA-Net is available at https://github.com/CXzhai/CFHA-Net.git.
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Affiliation(s)
- Lei Yang
- School of Electrical and Information Engineering, Zhengzhou University, Henan Province, 450001, China; Robot Perception and Control Engineering Laboratory of Henan Province, 450001, China
| | - Chenxu Zhai
- School of Electrical and Information Engineering, Zhengzhou University, Henan Province, 450001, China; Robot Perception and Control Engineering Laboratory of Henan Province, 450001, China
| | - Yanhong Liu
- School of Electrical and Information Engineering, Zhengzhou University, Henan Province, 450001, China; Robot Perception and Control Engineering Laboratory of Henan Province, 450001, China.
| | - Hongnian Yu
- School of Electrical and Information Engineering, Zhengzhou University, Henan Province, 450001, China; Built Environment, Edinburgh Napier University, Edinburgh EH10 5DT, UK
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19
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Lu Y, Wang K, Zhang W, Xie J, Huang S, Yang D, Zhang X. Learning contextual representations with copula function for medical image segmentation. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2023.104900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
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20
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Zhang H, Qiu Y, Song C, Li J. Landmark-Assisted Anatomy-Sensitive Retinal Vessel Segmentation Network. Diagnostics (Basel) 2023; 13:2260. [PMID: 37443654 DOI: 10.3390/diagnostics13132260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 06/28/2023] [Accepted: 06/30/2023] [Indexed: 07/15/2023] Open
Abstract
Automatic retinal vessel segmentation is important for assisting clinicians in diagnosing ophthalmic diseases. The existing deep learning methods remain constrained in instance connectivity and thin vessel detection. To this end, we propose a novel anatomy-sensitive retinal vessel segmentation framework to preserve instance connectivity and improve the segmentation accuracy of thin vessels. This framework uses TransUNet as its backbone and utilizes self-supervised extracted landmarks to guide network learning. TransUNet is designed to simultaneously benefit from the advantages of convolutional and multi-head attention mechanisms in extracting local features and modeling global dependencies. In particular, we introduce contrastive learning-based self-supervised extraction anatomical landmarks to guide the model to focus on learning the morphological information of retinal vessels. We evaluated the proposed method on three public datasets: DRIVE, CHASE-DB1, and STARE. Our method demonstrates promising results on the DRIVE and CHASE-DB1 datasets, outperforming state-of-the-art methods by improving the F1 scores by 0.36% and 0.31%, respectively. On the STARE dataset, our method achieves results close to the best-performing methods. Visualizations of the results highlight the potential of our method in maintaining topological continuity and identifying thin blood vessels. Furthermore, we conducted a series of ablation experiments to validate the effectiveness of each module in our model and considered the impact of image resolution on the results.
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Affiliation(s)
- Haifeng Zhang
- College of Information Science and Engineering, Northeastern University, Shenyang 110819, China
| | - Yunlong Qiu
- College of Information Science and Engineering, Northeastern University, Shenyang 110819, China
| | - Chonghui Song
- College of Information Science and Engineering, Northeastern University, Shenyang 110819, China
| | - Jiale Li
- College of Information Science and Engineering, Northeastern University, Shenyang 110819, China
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21
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Transformer and convolutional based dual branch network for retinal vessel segmentation in OCTA images. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2023.104604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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22
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Imran SMA, Saleem MW, Hameed MT, Hussain A, Naqvi RA, Lee SW. Feature preserving mesh network for semantic segmentation of retinal vasculature to support ophthalmic disease analysis. Front Med (Lausanne) 2023; 9:1040562. [PMID: 36714120 PMCID: PMC9880050 DOI: 10.3389/fmed.2022.1040562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Accepted: 12/20/2022] [Indexed: 01/14/2023] Open
Abstract
Introduction Ophthalmic diseases are approaching an alarming count across the globe. Typically, ophthalmologists depend on manual methods for the analysis of different ophthalmic diseases such as glaucoma, Sickle cell retinopathy (SCR), diabetic retinopathy, and hypertensive retinopathy. All these manual assessments are not reliable, time-consuming, tedious, and prone to error. Therefore, automatic methods are desirable to replace conventional approaches. The accuracy of this segmentation of these vessels using automated approaches directly depends on the quality of fundus images. Retinal vessels are assumed as a potential biomarker for the diagnosis of many ophthalmic diseases. Mostly newly developed ophthalmic diseases contain minor changes in vasculature which is a critical job for the early detection and analysis of disease. Method Several artificial intelligence-based methods suggested intelligent solutions for automated retinal vessel detection. However, existing methods exhibited significant limitations in segmentation performance, complexity, and computational efficiency. Specifically, most of the existing methods failed in detecting small vessels owing to vanishing gradient problems. To overcome the stated problems, an intelligence-based automated shallow network with high performance and low cost is designed named Feature Preserving Mesh Network (FPM-Net) for the accurate segmentation of retinal vessels. FPM-Net employs a feature-preserving block that preserves the spatial features and helps in maintaining a better segmentation performance. Similarly, FPM-Net architecture uses a series of feature concatenation that also boosts the overall segmentation performance. Finally, preserved features, low-level input image information, and up-sampled spatial features are aggregated at the final concatenation stage for improved pixel prediction accuracy. The technique is reliable since it performs better on the DRIVE database, CHASE-DB1 database, and STARE dataset. Results and discussion Experimental outcomes confirm that FPM-Net outperforms state-of-the-art techniques with superior computational efficiency. In addition, presented results are achieved without using any preprocessing or postprocessing scheme. Our proposed method FPM-Net gives improvement results which can be observed with DRIVE datasets, it gives Se, Sp, and Acc as 0.8285, 0.98270, 0.92920, for CHASE-DB1 dataset 0.8219, 0.9840, 0.9728 and STARE datasets it produces 0.8618, 0.9819 and 0.9727 respectively. Which is a remarkable difference and enhancement as compared to the conventional methods using only 2.45 million trainable parameters.
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Affiliation(s)
| | | | | | - Abida Hussain
- Faculty of CS and IT, Superior University, Lahore, Pakistan
| | - Rizwan Ali Naqvi
- Department of Unmanned Vehicle Engineering, Sejong University, Seoul, Republic of Korea,*Correspondence: Rizwan Ali Naqvi ✉
| | - Seung Won Lee
- School of Medicine, Sungkyunkwan University, Suwon, Republic of Korea,Seung Won Lee ✉
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23
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Liu Y, Shen J, Yang L, Yu H, Bian G. Wave-Net: A lightweight deep network for retinal vessel segmentation from fundus images. Comput Biol Med 2023; 152:106341. [PMID: 36463794 DOI: 10.1016/j.compbiomed.2022.106341] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2022] [Revised: 10/25/2022] [Accepted: 11/16/2022] [Indexed: 11/26/2022]
Abstract
Accurate segmentation of retinal vessels from fundus images is fundamental for the diagnosis of numerous diseases of eye, and an automated vessel segmentation method can effectively help clinicians to make accurate diagnosis for the patients and provide the appropriate treatment schemes. It is important to note that both thick and thin vessels play the key role for disease judgements. Because of complex factors, the precise segmentation of thin vessels is still a great challenge, such as the presence of various lesions, image noise, complex backgrounds and poor contrast in the fundus images. Recently, because of the advantage of context feature representation learning capabilities, deep learning has shown a remarkable segmentation performance on retinal vessels. However, it still has some shortcomings on high-precision retinal vessel extraction due to some factors, such as semantic information loss caused by pooling operations, limited receptive field, etc. To address these problems, this paper proposes a new lightweight segmentation network for precise retinal vessel segmentation, which is called as Wave-Net model on account of the whole shape. To alleviate the influence of semantic information loss problem to thin vessels, to acquire more contexts about micro structures and details, a detail enhancement and denoising block (DED) is proposed to improve the segmentation precision on thin vessels, which replaces the simple skip connections of original U-Net. On the other hand, it could well alleviate the influence of the semantic gap problem. Further, faced with limited receptive field, for multi-scale vessel detection, a multi-scale feature fusion block (MFF) is proposed to fuse cross-scale contexts to achieve higher segmentation accuracy and realize effective processing of local feature maps. Experiments indicate that proposed Wave-Net achieves an excellent performance on retinal vessel segmentation while maintaining a lightweight network design compared to other advanced segmentation methods, and it also has shown a better segmentation ability to thin vessels.
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Affiliation(s)
- Yanhong Liu
- School of Electrical and Information Engineering, Zhengzhou University, 450001, China; Robot Perception and Control Engineering Laboratory, Henan Province, 450001, China
| | - Ji Shen
- School of Electrical and Information Engineering, Zhengzhou University, 450001, China; Robot Perception and Control Engineering Laboratory, Henan Province, 450001, China
| | - Lei Yang
- School of Electrical and Information Engineering, Zhengzhou University, 450001, China; Robot Perception and Control Engineering Laboratory, Henan Province, 450001, China.
| | - Hongnian Yu
- School of Electrical and Information Engineering, Zhengzhou University, 450001, China; The Built Environment, Edinburgh Napier University, Edinburgh EH10 5DT, UK
| | - Guibin Bian
- School of Electrical and Information Engineering, Zhengzhou University, 450001, China; The State Key Laboratory of Management and Control for Complex Systems, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
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24
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SFA-Net: Scale and Feature Aggregate Network for Retinal Vessel Segmentation. JOURNAL OF HEALTHCARE ENGINEERING 2022; 2022:4695136. [PMID: 36312595 PMCID: PMC9616669 DOI: 10.1155/2022/4695136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Revised: 09/22/2022] [Accepted: 10/02/2022] [Indexed: 11/18/2022]
Abstract
A U-Net-based network has achieved competitive performance in retinal vessel segmentation. Previous work has focused on using multilevel high-level features to improve segmentation accuracy but has ignored the importance of shallow-level features. In addition, multiple upsampling and convolution operations may destroy the semantic feature information contained in the decoder layer. To address these problems, we propose a scale and feature aggregate network (SFA-Net), which can make full use of multiscale high-level feature information and shallow features. In this paper, a residual atrous spatial feature aggregate block (RASF) is embedded at the end of the encoder to learn multiscale information. Furthermore, an attentional feature module (AFF) is proposed to enhance the effective fusion between shallow and high-level features. In addition, we designed the multi-path feature fusion (MPF) block to fuse high-level features of different decoder layers, which aims to learn the relationship between the high-level features of different paths and alleviate the information loss. We apply the network to the three benchmark datasets (DRIVE, STARE, and CHASE_DB1) and compare them with the other current state-of-the-art methods. The experimental results demonstrated that the proposed SFA-Net performs effectively, indicating that the network is suitable for processing some complex medical images.
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