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Chaudhari AA, Sharma AM, Rastogi L, Dewangan BP, Sharma R, Singh D, Sah RK, Das S, Bhattacharjee S, Mellerowicz EJ, Pawar PAM. Modifying lignin composition and xylan O-acetylation induces changes in cell wall composition, extractability, and digestibility. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2024; 17:73. [PMID: 38822388 PMCID: PMC11141020 DOI: 10.1186/s13068-024-02513-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2023] [Accepted: 05/01/2024] [Indexed: 06/03/2024]
Abstract
BACKGROUND Lignin and xylan are important determinants of cell wall structure and lignocellulosic biomass digestibility. Genetic manipulations that individually modify either lignin or xylan structure improve polysaccharide digestibility. However, the effects of their simultaneous modifications have not been explored in a similar context. Here, both individual and combinatorial modification in xylan and lignin was studied by analysing the effect on plant cell wall properties, biotic stress responses and integrity sensing. RESULTS Arabidopsis plant co-harbouring mutation in FERULATE 5-HYDROXYLASE (F5H) and overexpressing Aspergillus niger acetyl xylan esterase (35S:AnAXE1) were generated and displayed normal growth attributes with intact xylem architecture. This fah1-2/35S:AnAXE1 cross was named as hyper G lignin and hypoacetylated (HrGHypAc) line. The HrGHypAc plants showed increased crystalline cellulose content with enhanced digestibility after chemical and enzymatic pre-treatment. Moreover, both parents and HrGHypAc without and after pre-treating with glucuronyl esterase and alpha glucuronidase exhibited an increase in xylose release after xylanase digestion as compared to wild type. The de-pectinated fraction in HrGHypAc displayed elevated levels of xylan and cellulose. Furthermore, the transcriptomic analysis revealed differential expression in cell wall biosynthetic, transcription factors and wall-associated kinases genes implying the role of lignin and xylan modification on cellular regulatory processes. CONCLUSIONS Simultaneous modification in xylan and lignin enhances cellulose content with improved saccharification efficiency. These modifications loosen cell wall complexity and hence resulted in enhanced xylose and xylobiose release with or without pretreatment after xylanase digestion in both parent and HrGHypAc. This study also revealed that the disruption of xylan and lignin structure is possible without compromising either growth and development or defense responses against Pseudomonas syringae infection.
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Affiliation(s)
- Aniket Anant Chaudhari
- Regional Centre for Biotechnology, Laboratory of Plant Cell Wall Biology, NCR Biotech Science, Cluster 3rd Milestone, Faridabad-Gurgaon Expressway, Faridabad-121001, Haryana, India
| | - Anant Mohan Sharma
- Regional Centre for Biotechnology, Laboratory of Plant Cell Wall Biology, NCR Biotech Science, Cluster 3rd Milestone, Faridabad-Gurgaon Expressway, Faridabad-121001, Haryana, India
| | - Lavi Rastogi
- Regional Centre for Biotechnology, Laboratory of Plant Cell Wall Biology, NCR Biotech Science, Cluster 3rd Milestone, Faridabad-Gurgaon Expressway, Faridabad-121001, Haryana, India
| | - Bhagwat Prasad Dewangan
- Regional Centre for Biotechnology, Laboratory of Plant Cell Wall Biology, NCR Biotech Science, Cluster 3rd Milestone, Faridabad-Gurgaon Expressway, Faridabad-121001, Haryana, India
| | - Raunak Sharma
- Regional Centre for Biotechnology, Laboratory of Plant Cell Wall Biology, NCR Biotech Science, Cluster 3rd Milestone, Faridabad-Gurgaon Expressway, Faridabad-121001, Haryana, India
| | - Deepika Singh
- Regional Centre for Biotechnology, Laboratory of Plant Cell Wall Biology, NCR Biotech Science, Cluster 3rd Milestone, Faridabad-Gurgaon Expressway, Faridabad-121001, Haryana, India
| | - Rajan Kumar Sah
- Regional Centre for Biotechnology, Laboratory of Plant Cell Wall Biology, NCR Biotech Science, Cluster 3rd Milestone, Faridabad-Gurgaon Expressway, Faridabad-121001, Haryana, India
| | - Shouvik Das
- Regional Centre for Biotechnology, Laboratory of Plant Cell Wall Biology, NCR Biotech Science, Cluster 3rd Milestone, Faridabad-Gurgaon Expressway, Faridabad-121001, Haryana, India
| | - Saikat Bhattacharjee
- Regional Centre for Biotechnology, Laboratory of Plant Cell Wall Biology, NCR Biotech Science, Cluster 3rd Milestone, Faridabad-Gurgaon Expressway, Faridabad-121001, Haryana, India
| | - Ewa J Mellerowicz
- Department of Forest Genetics and Plant Physiology, Umea Plant Science Centre, Swedish University of Agricultural Sciences, Umea, Sweden
| | - Prashant Anupama-Mohan Pawar
- Regional Centre for Biotechnology, Laboratory of Plant Cell Wall Biology, NCR Biotech Science, Cluster 3rd Milestone, Faridabad-Gurgaon Expressway, Faridabad-121001, Haryana, India.
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Sivaramakrishnan M, Veeraganti Naveen Prakash C, Chandrasekar B. Multifaceted roles of plant glycosyl hydrolases during pathogen infections: more to discover. PLANTA 2024; 259:113. [PMID: 38581452 DOI: 10.1007/s00425-024-04391-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Accepted: 03/15/2024] [Indexed: 04/08/2024]
Abstract
MAIN CONCLUSION Carbohydrates are hydrolyzed by a family of carbohydrate-active enzymes (CAZymes) called glycosidases or glycosyl hydrolases. Here, we have summarized the roles of various plant defense glycosidases that possess different substrate specificities. We have also highlighted the open questions in this research field. Glycosidases or glycosyl hydrolases (GHs) are a family of carbohydrate-active enzymes (CAZymes) that hydrolyze glycosidic bonds in carbohydrates and glycoconjugates. Compared to those of all other sequenced organisms, plant genomes contain a remarkable diversity of glycosidases. Plant glycosidases exhibit activities on various substrates and have been shown to play important roles during pathogen infections. Plant glycosidases from different GH families have been shown to act upon pathogen components, host cell walls, host apoplastic sugars, host secondary metabolites, and host N-glycans to mediate immunity against invading pathogens. We could classify the activities of these plant defense GHs under eleven different mechanisms through which they operate during pathogen infections. Here, we have provided comprehensive information on the catalytic activities, GH family classification, subcellular localization, domain structure, functional roles, and microbial strategies to regulate the activities of defense-related plant GHs. We have also emphasized the research gaps and potential investigations needed to advance this topic of research.
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Affiliation(s)
| | | | - Balakumaran Chandrasekar
- Department of Biological Sciences, Birla Institute of Technology and Science, Pilani (BITS Pilani), Pilani, 333031, India.
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Rather MA, Dolley A, Hazarika N, Ritse V, Sarma K, Jamir L, Satapathy SS, Ray SK, Deka RC, Biswal AK, Doley R, Mandal M, Namsa ND. Glycome Profiling and Bioprospecting Potential of the Himalayan Buddhist Handmade Paper of Tawang Region of Arunachal Pradesh. FRONTIERS IN PLANT SCIENCE 2022; 13:831589. [PMID: 35677250 PMCID: PMC9168884 DOI: 10.3389/fpls.2022.831589] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Accepted: 04/19/2022] [Indexed: 06/15/2023]
Abstract
The paper and pulp industry (PPI) is one of the largest industries that contribute to the growing economy of the world. While wood remains the primary raw material of the PPIs, the demand for paper has also grown alongside the expanding global population, leading to deforestation and ecological imbalance. Wood-based paper production is associated with enormous utilization of water resources and the release of different wastes and untreated sludge that degrades the quality of the environment and makes it unsafe for living creatures. In line with this, the indigenous handmade paper making from the bark of Daphne papyracea, Wall. ex G. Don by the Monpa tribe of Arunachal Pradesh, India is considered as a potential alternative to non-wood fiber. This study discusses the species distribution modeling of D. papyracea, community-based production of the paper, and glycome profiling of the paper by plant cell wall glycan-directed monoclonal antibodies. The algorithms used for ecological and geographical modeling indicated the maximum predictive distribution of the plant toward the western parts of Arunachal Pradesh. It was also found that the suitable distribution of D. papyracea was largely affected by the precipitation and temperature variables. Plant cell walls are primarily made up of cellulose, hemicellulose, lignin, pectin, and glycoproteins. Non-cellulosic cell wall glycans contribute significantly to various physical properties such as density, crystallinity, and tensile strength of plant cell walls. Therefore, a detailed analysis of non-cellulosic cell wall glycan through glycome profiling and glycosyl residue composition analysis is important for the polymeric composition and commercial processing of D. papyracea paper. ELISA-based glycome profiling results demonstrated that major classes of cell wall glycans such as xylan, arabinogalactans, and rhamnogalacturonan-I were present on D. papyracea paper. The presence of these polymers in the Himalayan Buddhist handmade paper of Arunachal Pradesh is correlated with its high tensile strength. The results of this study imply that non-cellulosic cell wall glycans are required for the production of high-quality paper. To summarize, immediate action is required to strengthen the centuries-old practice of handmade paper, which can be achieved through education, workshops, technical know-how, and effective marketing aid to entrepreneurs.
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Affiliation(s)
- Muzamil Ahmad Rather
- Department of Molecular Biology and Biotechnology, Tezpur University, Napaam, India
| | - Anutee Dolley
- Department of Molecular Biology and Biotechnology, Tezpur University, Napaam, India
| | - Nabajit Hazarika
- Department of Environmental Biology and Wildlife Sciences, Cotton University, Guwahati, India
| | - Vimha Ritse
- Department of Environmental Science, Nagaland University, Lumami, India
| | - Kuladip Sarma
- Department of Zoology, Cotton University, Guwahati, India
| | - Latonglila Jamir
- Department of Environmental Science, Nagaland University, Lumami, India
| | - Siddhartha Shankar Satapathy
- Department of Computer Science and Engineering, Tezpur University, Napaam, India
- Centre for Multi-disciplinary Research, Tezpur University, Napaam, India
| | - Suvendra Kumar Ray
- Department of Molecular Biology and Biotechnology, Tezpur University, Napaam, India
- Centre for Multi-disciplinary Research, Tezpur University, Napaam, India
| | - Ramesh Chandra Deka
- Centre for Multi-disciplinary Research, Tezpur University, Napaam, India
- Department of Chemical Sciences, Tezpur University, Napaam, India
| | - Ajaya Kumar Biswal
- Department of Biochemistry and Molecular Biology and Complex Carbohydrate Research Center, University of Georgia, Athens, GA, United States
| | - Robin Doley
- Department of Molecular Biology and Biotechnology, Tezpur University, Napaam, India
| | - Manabendra Mandal
- Department of Molecular Biology and Biotechnology, Tezpur University, Napaam, India
- Centre for Multi-disciplinary Research, Tezpur University, Napaam, India
| | - Nima D. Namsa
- Department of Molecular Biology and Biotechnology, Tezpur University, Napaam, India
- Centre for Multi-disciplinary Research, Tezpur University, Napaam, India
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Wang J, Chen X, Chu S, Hayat K, Chi Y, Zhi Y, Zhang D, Zhou P. Influence of Cd toxicity on subcellular distribution, chemical forms, and physiological responses of cell wall components towards short-term Cd stress in Solanum nigrum. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:13955-13969. [PMID: 33201503 DOI: 10.1007/s11356-020-11505-5] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2020] [Accepted: 11/02/2020] [Indexed: 06/11/2023]
Abstract
Solanum nigrum is a well-documented cadmium (Cd) hyperaccumulator; however, its Cd-induced tolerance capability and detoxification mechanism remain elusive. Hence, a short-term hydroponic experiment was performed in a multiplane glasshouse to determine the influence of Cd toxicity on subcellular distribution, chemical forms, and the physiological responses of cell wall towards Cd stress in a 4-week-old plant. The experiment was conducted following completely randomized design (CRD) with five treatments (n = 4 replicates). The results showed that Cd stress showed dose-dependent response towards growth inhibition. The subcellular distribution of Cd in S. nigrum was in the order of cell wall > soluble fractions > organelles, and Cd was predominantly extracted by 1 M NaCl (29.87~43.66%). The Cd contents in different plant tissues and cell wall components including pectin, hemicellulose 1 (HC1), hemicellulose 2 (HC2), and cellulose were increased with the increase in Cd concentrations; however, the percentage of Cd concentration decreased in pectin and cellulose. Results of the polysaccharide components such as uronic acid, total sugar contents, and pectin methylesterase (PME) activity showed Cd-induced dose-dependent increase relative to exposure Cd stress. The pectin methylesterase (PME) activity was significantly (p < 0.05) enhanced by 125.78% at 75 μM Cd in root, 105.78% and 73.63% at 100 μM Cd in stem and leaf, respectively. In addition, the esterification, amidation, and pectinase treatment of cell wall and Fourier transform infrared spectroscopy (FTIR) assay exhibited many functional groups that were involved in cell wall retention Cd, especially on carboxyl and hydroxyl groups of cell wall components that indicated that the -OH and -COOH groups of S. nigrum cell wall play a crucial role in Cd fixation. In summary, results of the current study will add a novel insight to understand mobilization/immobilization as well as detoxification mechanism of cadmium in S. nigrum.
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Affiliation(s)
- Juncai Wang
- School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China
- Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Areas, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Xunfeng Chen
- School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China
- Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Areas, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Shaohua Chu
- School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China
- Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Areas, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Kashif Hayat
- School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China
- Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Areas, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Yaowei Chi
- School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China
- Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Areas, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Yuee Zhi
- School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China
- Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Areas, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Dan Zhang
- School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China.
- Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Areas, Shanghai Jiao Tong University, Shanghai, 200240, China.
| | - Pei Zhou
- School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China.
- Key Laboratory of Urban Agriculture, Ministry of Agriculture and Rural Areas, Shanghai Jiao Tong University, Shanghai, 200240, China.
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Rosquete MR, Drakakaki G. Plant TGN in the stress response: a compartmentalized overview. CURRENT OPINION IN PLANT BIOLOGY 2018; 46:122-129. [PMID: 30316189 DOI: 10.1016/j.pbi.2018.09.003] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2018] [Revised: 08/31/2018] [Accepted: 09/04/2018] [Indexed: 05/10/2023]
Abstract
The cellular responses to abiotic and biotic stress rely on the regulation of vesicle trafficking to ensure the correct localization of proteins specialized in sensing stress stimuli and effecting the response. Several studies have implicated the plant trans-Golgi network (TGN)-mediated trafficking in different types of biotic and abiotic stress responses; however, the underlying molecular mechanisms are poorly understood. Further, the identity, specialization and stress-relevant cargo transported by the TGN subcompartments involved in stress responses await more in depth characterization. This review presents TGN trafficking players implicated in stress and discusses potential avenues to understand the role of this dynamic network under such extreme circumstances.
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Affiliation(s)
- Michel Ruiz Rosquete
- Department of Plant Sciences, University of California, Davis, CA 95616, United States.
| | - Georgia Drakakaki
- Department of Plant Sciences, University of California, Davis, CA 95616, United States.
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