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Aher A, Bera P, Brandao P, Sharda S, Khatua S, Manna SK, Manhas A, Bera P. Anticancer efficacy of thiazole-naphthyl derivatives targeting DNA: Synthesis, crystal structure, density functional theory, molecular docking, and molecular dynamics studies. Int J Biol Macromol 2025; 299:140039. [PMID: 39828180 DOI: 10.1016/j.ijbiomac.2025.140039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2024] [Revised: 01/13/2025] [Accepted: 01/16/2025] [Indexed: 01/22/2025]
Abstract
Two newly synthesized ligands, 1-((2-(4-(4-methoxyphenyl)thiazol-2-yl)hydrazono)methyl)naphthalen-2-ol (HL1) and 1-((2-(4-(naphthalen-1-yl)thiazol-2-yl)hydrazono)methyl)naphthalen-2-ol (HL2) were characterized using spectroscopy and single X-ray crystallography. Both belong to triclinic systems with space groups P21/c (HL1) and P-1 (HL2), exhibiting planar structures. Biological assays revealed significant antitumor activity, with HL2 showing significant antitumor activity against HepG2 cells (IC50: 3.2 ± 0.1 μM) compared to HL1 (IC50: 7.3 ± 0.3 μM). Mechanistic studies revealed HL2 induces apoptosis, while HL1 triggers necroptosis, and both were non-toxic to peripheral blood mononuclear cells (PBMC). UV-Vis titration showed that HL2 binds more strongly to DNA (Kb: 1.08 ± 0.215 × 105 M-1) than HL1 (Kb: 1.02 ± 0.155 × 104 M-1), attributed to stronger naphthyl chromophore stacking with DNA base pairs. Supporting this, hypochromic effects, circular dichroism spectra, and increased DNA viscosity suggest HL2 is a moderate intercalator, while HL1 functions as a groover binder. Docking studies revealed that in HL2, an additional naphthyl group enhances DNA binding affinity, explaining its superior efficacy. Molecular dynamics simulations further confirmed the stable binding of both ligands to DNA in the biological environment. These experimental and theoretical findings highlight the superior binding affinity of HL2 and its potential as a promising candidate for cancer therapy.
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Affiliation(s)
- Abhishek Aher
- Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad, Telangana 500 039, India
| | - Pradip Bera
- Post Graduate Department of Chemistry, Panskura Banamali College (Vidyasagar University), Panskura R.S, Midnapore (East), West Bengal 721152, India; Department of Chemistry, Kandi Raj College, Murshidabad, West Bengal 742137, India
| | - Paula Brandao
- Department of Chemistry, CICECO, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Saphy Sharda
- Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad, Telangana 500 039, India
| | - Sabyasachi Khatua
- Yogoda Satsanga Palpara Mahavidyalaya, Palpara, Purba Medinipur 721458, West Bengal 721458, India
| | - Sunil Kumar Manna
- Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad, Telangana 500 039, India
| | - Anu Manhas
- Department of Chemistry, School of Energy Technology, Pandit Deendayal Energy University, Gandhinagar 382426, India.
| | - Pulakesh Bera
- Post Graduate Department of Chemistry, Panskura Banamali College (Vidyasagar University), Panskura R.S, Midnapore (East), West Bengal 721152, India.
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Abdel-Motaal M, Aldakhili DA, Farag AB, Elmaaty AA, Sharaky M, Mohamed NA, Shaaban S, Alzahrani AYA, Al-Karmalawy AA. Design and synthesis of novel multi-target tetrabromophthalimides as CBS and Topo-II inhibitors and DNA intercalators. RSC Med Chem 2024:d4md00585f. [PMID: 39290384 PMCID: PMC11403875 DOI: 10.1039/d4md00585f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2024] [Accepted: 08/30/2024] [Indexed: 09/19/2024] Open
Abstract
Microtubules are highly dynamic structures and constitute a crucial component of the cellular cytoskeleton. Besides, topoisomerases (Topo) play a fundamental role in maintaining the appropriate structure and organization of DNA. On the other hand, dual mechanism drug candidates for cancer treatment primarily aim to enhance the efficacy of cancer treatment and potentially overcome drug resistance. Hence, this work was tailored to design and synthesize new multi-target tetrabromophthalimide derivatives (2a-2k) that are capable of inhibiting the colchicine binding site (CBS) and topoisomerase II (Topo-II). The conducted in vitro studies showed that compound 2f showed the lowest IC50 value (6.7 μg mL-1) against the MDA-MB-468 cancer cell line. Additionally, compound 2f prompted upregulation of pro-apoptotic markers (caspases 3, 7, 8, and 9, Bax and p53). Moreover, some anti-apoptotic proteins (MMP2, MMP9, and BCL-2) were downregulated by compound 2f treatment. Besides, the colchicine binding assay showed that compounds 2f and 2k displayed promising inhibitory potential with IC50 values of 1.92 and 4.84 μg mL-1, respectively, in comparison with colchicine (1.55 μg mL-1). Furthermore, the Topo-II inhibition assay displayed the prominent inhibitory potential of compound 2f with an IC50 value of 15.75 μg mL-1, surpassing the IC50 of etoposide (20.82 μg mL-1). Cell cycle analysis revealed that compound 2f induced cell cycle arrest at both the G0-G1 and G2-M phases. The new candidates were docked against both the CBS (PDB ID: 5XIW) and Topo-II (PDB ID: 5CDP) targets to investigate their binding interactions and affinities as well. Accordingly, the synthesized compounds could serve as promising multi-target anticancer candidates with eligible apoptotic activity.
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Affiliation(s)
- Marwa Abdel-Motaal
- Department of Chemistry, College of Science, Qassim University Buraydah 51452 Qassim Saudi Arabia
- Organic Chemistry Division, Department of Chemistry, College of Science, Mansoura University Mansoura Egypt
| | - Dalal Ali Aldakhili
- Department of Chemistry, College of Science, Qassim University Buraydah 51452 Qassim Saudi Arabia
| | - Ayman B Farag
- Pharmaceutical Chemistry Department, Faculty of Pharmacy, Ahram Canadian University 6th of October City Giza 12566 Egypt
| | - Ayman Abo Elmaaty
- Medicinal Chemistry Department, Faculty of Pharmacy, Port Said University Port Said 42511 Egypt
| | - Marwa Sharaky
- Cancer Biology Department, Pharmacology Unit, National Cancer Institute (NCI), Cairo University Cairo Egypt
| | - Nadia A Mohamed
- Department of Chemistry, College of Science, Qassim University Buraydah 51452 Qassim Saudi Arabia
| | - Saad Shaaban
- Organic Chemistry Division, Department of Chemistry, College of Science, Mansoura University Mansoura Egypt
- Department of Chemistry, College of Science, King Faisal University P.O. Box 380 Al-Ahsa 31982 Saudi Arabia
| | | | - Ahmed A Al-Karmalawy
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Mashreq Baghdad 10023 Iraq
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Horus University-Egypt New Damietta 34518 Egypt
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3
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Doraghi F, Morshedsolouk MH, Zahedi NA, Larijani B, Mahdavi M. Phthalimides: developments in synthesis and functionalization. RSC Adv 2024; 14:22809-22827. [PMID: 39035712 PMCID: PMC11259108 DOI: 10.1039/d4ra03859b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2024] [Accepted: 06/27/2024] [Indexed: 07/23/2024] Open
Abstract
Phthalimides, an important class of biologically active N-heterocycles, are not only found in pharmaceuticals, natural products, agrochemicals, polymers, and dyes, but also serve as building blocks in organic transformations. Many synthetic methods, including metal catalysis and metal-free systems, have been developed to prepare functionalized phthalimides. In this review, we describe the developments in the synthesis and functionalization of phthalimides over the past two decades.
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Affiliation(s)
- Fatemeh Doraghi
- Endocrinology and Metabolism Research Center, Endocrinology and Metabolism Clinical Sciences Institute, Tehran University of Medical Sciences Tehran Iran
| | - Mohammad Hossein Morshedsolouk
- Endocrinology and Metabolism Research Center, Endocrinology and Metabolism Clinical Sciences Institute, Tehran University of Medical Sciences Tehran Iran
- School of Chemistry, College of Science, University of Tehran Tehran Iran
| | - Nawrooz Ali Zahedi
- Department of Chemistry, Faculty of Education, Ghazni University Ghazni Afghanistan
| | - Bagher Larijani
- Endocrinology and Metabolism Research Center, Endocrinology and Metabolism Clinical Sciences Institute, Tehran University of Medical Sciences Tehran Iran
| | - Mohammad Mahdavi
- Endocrinology and Metabolism Research Center, Endocrinology and Metabolism Clinical Sciences Institute, Tehran University of Medical Sciences Tehran Iran
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Khaleghi N, Esmkhani M, Noori M, Dastyafteh N, Ghomi MK, Mahdavi M, Sayahi MH, Javanshir S. Copper supported modified magnetic carrageenan as a bio-based catalyst for the synthesis of novel scaffolds bearing the 1,2,3-triazole unit through the click reaction. NANOSCALE ADVANCES 2024; 6:2337-2349. [PMID: 38694460 PMCID: PMC11059478 DOI: 10.1039/d4na00022f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 03/18/2024] [Indexed: 05/04/2024]
Abstract
The ongoing work delineates the design of a novel library of 1,2,3-triazole-attached phenylacetamides through molecular hybridization of propargyl and phenylacetamide derivatives. Copper-supported modified magnetic carrageenan serves as a green heterogeneous catalyst, ensuring high yield, efficient reaction times, high atom economy, utilization of an environmentally friendly catalyst from a natural source, and a straightforward workup procedure. The successful synthesis of the catalyst is confirmed and evaluated using various analytical techniques, while the synthetic compounds are characterized through 1H NMR and 13C NMR.
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Affiliation(s)
- Nima Khaleghi
- Endocrinology and Metabolism Research Center, Endocrinology and Metabolism Clinical Sciences Institute, Tehran University of Medical Sciences Tehran Iran
| | - Maryam Esmkhani
- Pharmaceutical and Heterocyclic Compounds Research Laboratory, Department of Chemistry, Iran University of Science and Technology 16846-13114 Tehran Iran
| | - Milad Noori
- Pharmaceutical and Heterocyclic Compounds Research Laboratory, Department of Chemistry, Iran University of Science and Technology 16846-13114 Tehran Iran
| | - Navid Dastyafteh
- Pharmaceutical and Heterocyclic Compounds Research Laboratory, Department of Chemistry, Iran University of Science and Technology 16846-13114 Tehran Iran
| | - Minoo Khalili Ghomi
- Endocrinology and Metabolism Research Center, Endocrinology and Metabolism Clinical Sciences Institute, Tehran University of Medical Sciences Tehran Iran
| | - Mohammad Mahdavi
- Endocrinology and Metabolism Research Center, Endocrinology and Metabolism Clinical Sciences Institute, Tehran University of Medical Sciences Tehran Iran
| | | | - Shahrzad Javanshir
- Pharmaceutical and Heterocyclic Compounds Research Laboratory, Department of Chemistry, Iran University of Science and Technology 16846-13114 Tehran Iran
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Farghaly TA, Alfaifi GH, Gomha SM. Recent Literature on the Synthesis of Thiazole Derivatives and their Biological Activities. Mini Rev Med Chem 2024; 24:196-251. [PMID: 37496137 DOI: 10.2174/1389557523666230726142459] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Revised: 05/22/2023] [Accepted: 06/15/2023] [Indexed: 07/28/2023]
Abstract
The thiazole ring is naturally occurring and is primarily found in marine and microbial sources. It has been identified in various compounds such as peptides, vitamins (thiamine), alkaloids, epothilone, and chlorophyll. Thiazole-containing compounds are widely recognized for their antibacterial, antifungal, anti-inflammatory, antimalarial, antitubercular, antidiabetic, antioxidant, anticonvulsant, anticancer, and cardiovascular activities. The objective of this review is to present recent advancements in the discovery of biologically active thiazole derivatives, including their synthetic methods and biological effects. This review comprehensively discusses the synthesis methods of thiazole and its corresponding biological activities within a specific timeframe, from 2017 until the conclusion of 2022.
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Affiliation(s)
- Thoraya A Farghaly
- Department of Chemistry, Faculty of Applied Science, Umm Al-Qura University, Makkah Almukaramah, 21514, Saudi Arabia
| | - Ghaidaa H Alfaifi
- Department of Chemistry, Faculty of Applied Science, Umm Al-Qura University, Makkah Almukaramah, 21514, Saudi Arabia
| | - Sobhi M Gomha
- Department of Chemistry, Faculty of Science, Islamic University of Madinah, Madinah, 42351, Saudi Arabia
- Department of Chemistry, Faculty of Science, University of Cairo, Giza, Egypt
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Silva DVSPD, Nascimento PHDB, Rocha JVRD, Marques DSC, Brayner FA, Alves LC, Araújo HDAD, Cruz Filho IJD, Albuquerque MCPDA, Lima MDCAD, Aires ADL. In vitro activity, ultrastructural analysis and in silico pharmacokinetic properties (ADMET) of thiazole compounds against adult worms of Schistosoma mansoni. Acta Trop 2023; 245:106965. [PMID: 37295486 DOI: 10.1016/j.actatropica.2023.106965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Revised: 06/03/2023] [Accepted: 06/06/2023] [Indexed: 06/12/2023]
Abstract
The present work aimed to carry out in vitro biological assays of thiazole compounds against adult worms of Schistosoma mansoni, as well as the in silico determination of pharmacokinetic parameters to predict the oral bioavailability of these compounds. In addition to presenting moderate to low cytotoxicity against mammalian cells, thiazole compounds are not considered hemolytic. All compounds were initially tested at concentrations ranging from 200 to 6.25 μM against adult worms of S. mansoni parasites. The results showed the best activity of PBT2 and PBT5 at a concentration of 200 μM, which caused 100% mortality after 3 h of incubation. While at 6 h of exposure, 100% mortality was observed at the concentration of 100 µM. Subsequent studies with these same compounds allowed classifying PBT5, PBT2, PBT6 and PBT3 compounds, which were considered active and PBT1 and PBT4 compounds, which were considered inactive. In the ultrastructural analysis the compounds PBT2 and PBT5 (200 µM) promoted integumentary changes with exposure of the muscles, formation of integumentary blisters, integuments with abnormal morphology and destruction of tubercles and spicules. Therefore, the compounds PBT2 and PBT5 are promising antiparasitics against S. mansoni.
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Affiliation(s)
| | - Pedro Henrique do Bomfim Nascimento
- Departamento de Antibióticos, Universidade Federal de Pernambuco, Av. Prof. Moraes Rego, 1235 - Cidade Universitária, CEP 50.670-901, Recife, PE, Brazil
| | - João Victor Ritinto da Rocha
- Centro de Ciências Médicas - Programa de Pós-graduação em Medicina Tropical, Universidade Federal de Pernambuco, Recife, Pernambuco, Brazil
| | - Diego Santa Clara Marques
- Departamento de Antibióticos, Universidade Federal de Pernambuco, Av. Prof. Moraes Rego, 1235 - Cidade Universitária, CEP 50.670-901, Recife, PE, Brazil
| | - Fábio André Brayner
- Departamento de Parasitologia, Instituto Aggeu Magalhães, Avenida Prof. Moraes Rego, 1235, Cidade Universitária. CEP 50670-901, Recife, PE, Brazil; Instituto Keizo Asami - iLIKA, UFPE, Av. Prof. Moraes Rego, 1235 - Cidade Universitária, CEP 50670-901, Recife-PE, Brazil
| | - Luiz Carlos Alves
- Departamento de Parasitologia, Instituto Aggeu Magalhães, Avenida Prof. Moraes Rego, 1235, Cidade Universitária. CEP 50670-901, Recife, PE, Brazil; Instituto Keizo Asami - iLIKA, UFPE, Av. Prof. Moraes Rego, 1235 - Cidade Universitária, CEP 50670-901, Recife-PE, Brazil
| | - Hallysson Douglas Andrade de Araújo
- Instituto Keizo Asami - iLIKA, UFPE, Av. Prof. Moraes Rego, 1235 - Cidade Universitária, CEP 50670-901, Recife-PE, Brazil; Departamento de Bioquímica. Universidade Federal de Pernambuco, Av. Prof. Moraes Rego, 1235 - Cidade Universitária, CEP 50.670-901, Recife, PE, Brazil
| | - Iranildo José da Cruz Filho
- Centro de Biociências, Programa de Pós-graduação em Morfotecnologia, Universidade Federal de Pernambuco, Recife, Brazil; Departamento de Antibióticos, Universidade Federal de Pernambuco, Av. Prof. Moraes Rego, 1235 - Cidade Universitária, CEP 50.670-901, Recife, PE, Brazil
| | | | - Maria do Carmo Alves de Lima
- Departamento de Parasitologia, Instituto Aggeu Magalhães, Avenida Prof. Moraes Rego, 1235, Cidade Universitária. CEP 50670-901, Recife, PE, Brazil
| | - André de Lima Aires
- Centro de Biociências, Programa de Pós-graduação em Morfotecnologia, Universidade Federal de Pernambuco, Recife, Brazil; Centro de Ciências Médicas - Programa de Pós-graduação em Medicina Tropical, Universidade Federal de Pernambuco, Recife, Pernambuco, Brazil; Instituto Keizo Asami - iLIKA, UFPE, Av. Prof. Moraes Rego, 1235 - Cidade Universitária, CEP 50670-901, Recife-PE, Brazil.
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Matore BW, Banjare P, Sarthi AS, Roy PP, Singh J. Phthalimides Represent a Promising Scaffold for Multi‐Targeted Anticancer Agents. ChemistrySelect 2023. [DOI: 10.1002/slct.202204851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/05/2023]
Affiliation(s)
- Balaji Wamanrao Matore
- Department of Pharmacy Guru Ghasidas Vishwavidyalaya (A Central University) Bilaspur Chhattisgarh 495009 India
| | - Purusottam Banjare
- Department of Pharmacy Guru Ghasidas Vishwavidyalaya (A Central University) Bilaspur Chhattisgarh 495009 India
| | - Ajay Singh Sarthi
- Rungta College of Pharmaceutical Sciences and Research Raipur Chhattisgarh 492009 India
| | - Partha Pratim Roy
- Department of Pharmacy Guru Ghasidas Vishwavidyalaya (A Central University) Bilaspur Chhattisgarh 495009 India
| | - Jagadish Singh
- Department of Pharmacy Guru Ghasidas Vishwavidyalaya (A Central University) Bilaspur Chhattisgarh 495009 India
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Matore BW, Roy PP, Singh J. Discovery of novel VEGFR2-TK inhibitors by phthalimide pharmacophore based virtual screening, molecular docking, MD simulation and DFT. J Biomol Struct Dyn 2023; 41:13056-13077. [PMID: 36775656 DOI: 10.1080/07391102.2023.2178510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Accepted: 01/12/2023] [Indexed: 02/14/2023]
Abstract
Currently, numerous potent chemotherapeutic agents are available in the market but most of them show poor pharmacokinetics, lethal effects and drug resistance during their enduring use. The increased cancer cases, deaths and need of better treatment stimulates us to give newer lifesaving anticancer drugs. The phthalimide derivatives are structurally diverse and exert potential anticancer activity. In this regard, the 3D QSAR Pharmacophore model was developed and validated using fifty-eight phthalimide derivatives. The validation parameters corroborated the reliability and statistical robustness of CEASER Hypo 1. Three databases-NCI Open, Drug Bank, and Asinex were submitted to ADMET and drug-like filtering; 117893 drug-like compounds were mapped on CEASER Hypo 1; and 362 hits with IC50 <1 µM were discovered. These hits were docked on VEGFR2-TK, and in the form of results fifteen hits exhibited greater affinity than sorafenib. The top lead ASN 03206926 was subjected for MD simulation (100 ns) and RMSD, Rg, RMSF, number of hydrogen bonds, and SASA verified that the complex was stable, rigid and highly compact. Results demonstrated GLU885, PHE918, CYS919, LYS920, HIS1026, CYS1045, ASP1046 are the essential residues for favourable interactions. The binding free energy calculations support the affinity and stability revealed by docking and MD simulation. The DFT calculations, negative binding energy and lower HOMO-LUMO band gap revealed that the process is spontaneous and ASN 03206926 is very reactive. Following extensive analysis we suggest that the ASN 03206926 might be employed as a new VEGFR2-TK inhibitor for the treatment of breast and VEGFR2-TK associated cancers.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Balaji Wamanrao Matore
- Department of Pharmacy, Guru Ghasidas Vishwavidyalaya (A Central University), Bilaspur, Chhattisgarh, India
| | - Partha Pratim Roy
- Department of Pharmacy, Guru Ghasidas Vishwavidyalaya (A Central University), Bilaspur, Chhattisgarh, India
| | - Jagadish Singh
- Department of Pharmacy, Guru Ghasidas Vishwavidyalaya (A Central University), Bilaspur, Chhattisgarh, India
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Mor S, Khatri M. Synthesis, antimicrobial evaluation, α-amylase inhibitory ability and molecular docking studies of 3-alkyl-1-(4-(aryl/heteroaryl)thiazol-2-yl)indeno[1,2-c]pyrazol-4(1H)-ones. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131526] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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