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Cienfuegos IA, Ciotti BJ, Billington RA, Sutton PA, Lamarre SG, Fraser KPP. Life in the margins: the effect of immersion/emersion and tidal cycle on the North Atlantic limpet Patella vulgata protein synthesis rates. J Comp Physiol B 2024:10.1007/s00360-024-01582-0. [PMID: 39261359 DOI: 10.1007/s00360-024-01582-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Revised: 07/30/2024] [Accepted: 08/16/2024] [Indexed: 09/13/2024]
Abstract
Biological processes in intertidal species follow tidal rhythms that enhance survival and fitness. Whereas tidal effects on behaviour and metabolic rates have been widely studied, impacts on other key process such as protein synthesis are still poorly understood. To date, no studies have examined the effect of immersion/emersion and tidal cycles on protein synthesis rates (ks). Patella vulgata is an intertidal limpet present in North-Eastern Atlantic rocky shores from high to low shore. Previously reported P. vulgata respiration and heart rate measurements suggest aerobic metabolism is maintained during emersion and growth rates increase from high to low shore, but whether these patterns are reflected in ks is currently unclear. Here, we measured for the first time in any intertidal organism, ks, RNA to protein ratios and RNA translational efficiency (kRNA) in P. vulgata over a full tidal cycle, at three different shore heights. ks increased during emersion (p < 0.001) and was significantly higher in low shore animals compared to the other shore heights (p < 0.001), additionally ks was negatively correlated to body mass (p = 0.002). RNA to protein ratios remained unchanged over the tidal cycle (p = 0.659) and did not vary with shore height (p = 0.591). kRNA was significantly higher during emersion and was also higher in low shore limpets (p < 0.001). This study demonstrates that P. vulgata increases ks during emersion, an important adaptation in a species that spends a considerable amount of its lifecycle emersed. Intertidal species are highly exposed to increasing air temperatures, making knowledge of physiological responses during emersion critical in understanding and forecasting climate warming impacts.
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Affiliation(s)
- Ignacio A Cienfuegos
- School of Biological and Marine Sciences, University of Plymouth, Davy Building, Drake Circus, Plymouth, PL4 8AA, UK.
| | - Benjamin J Ciotti
- School of Biological and Marine Sciences, University of Plymouth, Davy Building, Drake Circus, Plymouth, PL4 8AA, UK
| | - Richard A Billington
- School of Biological and Marine Sciences, University of Plymouth, Davy Building, Drake Circus, Plymouth, PL4 8AA, UK
| | - Paul A Sutton
- School of Geography, Earth and Environmental Sciences, University of Plymouth, Plymouth, PL4 8AA, UK
| | - Simon G Lamarre
- Département de Biologie, Université de Moncton, Moncton, NB, E1A 3E9, Canada
| | - Keiron P P Fraser
- School of Biological and Marine Sciences, University of Plymouth, Davy Building, Drake Circus, Plymouth, PL4 8AA, UK
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Krebs N, Tebben J, Bock C, Mark FC, Lucassen M, Lannig G, Pörtner HO. Protein Synthesis Determined from Non-Radioactive Phenylalanine Incorporated by Antarctic Fish. Metabolites 2023; 13:metabo13030338. [PMID: 36984778 PMCID: PMC10051348 DOI: 10.3390/metabo13030338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 02/22/2023] [Accepted: 02/23/2023] [Indexed: 03/03/2023] Open
Abstract
Direct measurements of temperature-dependent weight gains are experimentally challenging and time-consuming in long-lived/slow-growing organisms such as Antarctic fish. Here, we reassess methodology to quantify the in vivo protein synthesis rate from amino acids, as a key component of growth. We tested whether it is possible to avoid hazardous radioactive materials and whether the analytical pathway chosen is robust against analytical errors. In the eelpout, Pachycara brachycephalum, 13C9H1115N1O2 phenylalanine was injected intraperitoneally and muscle tissue was sampled before injection and at 1.5 h time intervals up to 6 h thereafter. The incorporation of 13C15N-labeled-phenylalanine into muscle was monitored by quantification of bound and free phenylalanine through liquid chromatography–mass spectrometry. We found an increase in the pool of labeled, free phenylalanine in the cytosolic fraction that leveled off after 4.5 h. The labeled phenylalanine bound in the proteins increased linearly over time. The resulting protein synthesis rate (Ks) for P. brachycephalum was as low as 0.049 ± 0.021% day−1. This value and its variability were in good agreement with literature data obtained from studies using radioactive labels, indicating that this methodology is well suited for characterizing growth in polar fish under in situ conditions in remote areas or on research vessels.
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Affiliation(s)
- Nina Krebs
- Department of Integrative Ecophysiology, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany
- Correspondence: (N.K.); (H.-O.P.)
| | - Jan Tebben
- Department of Ecological Chemistry, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany
| | - Christian Bock
- Department of Integrative Ecophysiology, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany
| | - Felix C. Mark
- Department of Integrative Ecophysiology, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany
| | - Magnus Lucassen
- Department of Integrative Ecophysiology, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany
| | - Gisela Lannig
- Department of Integrative Ecophysiology, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany
| | - Hans-Otto Pörtner
- Department of Integrative Ecophysiology, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany
- Correspondence: (N.K.); (H.-O.P.)
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Elowe C, Tomanek L. Circadian and circatidal rhythms of protein abundance in the California mussel (Mytilus californianus). Mol Ecol 2021; 30:5151-5163. [PMID: 34390513 DOI: 10.1111/mec.16122] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2018] [Revised: 08/04/2021] [Accepted: 08/11/2021] [Indexed: 11/26/2022]
Abstract
Coastal habitats fluctuate with the 12.4 h tidal and 24 h light/dark cycle to predictably alter conditions such as air exposure, temperature, and food availability. Intertidal sessile bivalves exhibit behavioral and physiological adjustments to minimize the challenges of this environment. We investigated a high-resolution time course of the changes in protein abundance in the gill tissue of the intertidal mussel Mytilus californianus in a simulated tidal environment of 12:12 h light:dark cycles and a matching 6:6 h high:low tide cycle within each 12 h period. Approximately 38% of detected proteins showed significant rhythms in their abundances, with diversity in the phases of rhythmic isoforms. The circadian rhythm was dominant in protein abundance changes, particularly with oxidative metabolism. A tidal cycle elicited changes within functional groups, including in cytoskeletal proteins, chaperones, and oxidative stress proteins. In addition to protein abundance changes, we found the possibility for post-translational modifications driving rhythms, including methylation, mitochondrial peptide processing (proteolysis), and acylation. Dynamic changes in the proteome across functional categories demonstrate the importance of the tidal environment in entraining cellular processes, confirming that differential expression studies should not assume a static baseline of cellular conditions in intertidal organisms.
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Affiliation(s)
- Cory Elowe
- California Polytechnic State University, Department of Biological Sciences Environmental Proteomics Laboratory, Grand Avenue San Luis Obispo, CA, USA
| | - Lars Tomanek
- California Polytechnic State University, Department of Biological Sciences Environmental Proteomics Laboratory, Grand Avenue San Luis Obispo, CA, USA
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McCarthy ID, Brown J. Assessing the reproducibility of fractional rates of protein synthesis in muscle tissue measured using the flooding dose technique. Comp Biochem Physiol A Mol Integr Physiol 2016; 197:9-15. [PMID: 26970581 DOI: 10.1016/j.cbpa.2016.03.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2015] [Revised: 03/02/2016] [Accepted: 03/03/2016] [Indexed: 11/18/2022]
Abstract
The flooding dose technique of Garlick et al. (1980) has become the main method for measuring tissue and whole-animal rates of protein synthesis in ectotherms. However, single tissue samples are used to determine rates of protein synthesis and no studies have examined the pattern of flooding in large tissues such as the white muscle in fishes, which can comprise up to 55% of the wet body mass of a fish and which is poorly perfused. The present study has examined, for the first time, the patterns of flooding and measured rates of protein synthesis in five different regions of the white muscle in the Arctic charr Salvelinus alpinus ranging in size from 25g to 1.6kg following a flooding dose injection of L-[(3)H]-phenylalanine. The results indicate that the degree of flooding (i.e. free pool specific radioactivity relative to that of the injection solution) and elevation in free phenylalanine concentrations can vary between regions but the calculated fractional rates of protein synthesis were similar in four of the five regions studied. The variability in rates of protein synthesis increased with body size with greater variability observed between regions for fish >1kg in body mass. For consistency between studies, it is recommended that samples are taken from the epaxial muscle in the region below the dorsal fin when measuring fractional rates of white muscle synthesis in fishes.
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Affiliation(s)
- Ian D McCarthy
- School of Ocean Sciences, College of Natural Sciences, Bangor University, Askew Street, Menai Bridge, Anglesey LL59 5AB, UK; Laboratorio de Manejo, Ecologia e Conservação Marinha, Instituto Oceanográfico, Universidade de São Paulo, Praça do Oceanográfico 191, Cidade Universitária, 05508-120 São Paulo, SP, Brazil.
| | - James Brown
- School of Biological Sciences, College of Natural Sciences, Bangor University, Deiniol Road, Bangor, Gwynedd, LL57 2UW, UK
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