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Regan CE, Bogdanova MI, Newell M, Gunn C, Wanless S, Harris MP, Lopez SL, Benninghaus E, Bolton M, Daunt F, Searle KR. Seabirds show foraging site and route fidelity but demonstrate flexibility in response to local information. MOVEMENT ECOLOGY 2024; 12:46. [PMID: 38872225 DOI: 10.1186/s40462-024-00467-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Accepted: 04/03/2024] [Indexed: 06/15/2024]
Abstract
BACKGROUND Fidelity to a given foraging location or route may be beneficial when environmental conditions are predictable but costly if conditions deteriorate or become unpredictable. Understanding the magnitude of fidelity displayed by different species and the processes that drive or erode it is therefore vital for understanding how fidelity may shape the demographic consequences of anthropogenic change. In particular, understanding the information that individuals may use to adjust their fidelity will facilitate improved predictions of how fidelity may change as environments change and the extent to which it will buffer individuals against such changes. METHODS We used movement data collected during the breeding season across eight years for common guillemots, Atlantic puffins, razorbills, and black-legged kittiwakes breeding on the Isle of May, Scotland to understand: (1) whether foraging site/route fidelity occurred within and between years, (2) whether the degree of fidelity between trips was predicted by personal foraging effort, and (3) whether different individuals made more similar trips when they overlapped in time at the colony prior to departure and/or when out at sea suggesting the use of the same local environmental cues or information on the decisions made by con- and heterospecifics. RESULTS All species exhibited site and route fidelity both within- and between-years, and fidelity between trips in guillemots and razorbills was related to metrics of foraging effort, suggesting they adjust fidelity to their personal foraging experience. We also found evidence that individuals used local environmental cues of prey location or availability and/or information gained by observing conspecifics when choosing foraging routes, particularly in puffins, where trips of individuals that overlapped temporally at the colony or out at sea were more similar. CONCLUSIONS The fidelity shown by these seabird species has the potential to put them at greater risk in the face of environmental change by driving individuals to continue using areas being degraded by anthropogenic pressures. However, our results suggest that individuals show some flexibility in their fidelity, which may promote resilience under environmental change. The benefits of this flexibility are likely to depend on numerous factors, including the rapidity and spatial scale of environmental change and the reliability of the information individuals use to choose foraging sites or routes, thus highlighting the need to better understand how organisms combine cues, prior experience, and other sources of information to make movement decisions.
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Affiliation(s)
- Charlotte E Regan
- UK Centre for Ecology & Hydrology, Bush Estate, EH26 0QB, Penicuik, Midlothian, UK.
| | - Maria I Bogdanova
- UK Centre for Ecology & Hydrology, Bush Estate, EH26 0QB, Penicuik, Midlothian, UK
| | - Mark Newell
- UK Centre for Ecology & Hydrology, Bush Estate, EH26 0QB, Penicuik, Midlothian, UK
| | - Carrie Gunn
- UK Centre for Ecology & Hydrology, Bush Estate, EH26 0QB, Penicuik, Midlothian, UK
| | - Sarah Wanless
- UK Centre for Ecology & Hydrology, Bush Estate, EH26 0QB, Penicuik, Midlothian, UK
| | - Mike P Harris
- UK Centre for Ecology & Hydrology, Bush Estate, EH26 0QB, Penicuik, Midlothian, UK
| | | | - Ella Benninghaus
- UK Centre for Ecology & Hydrology, Bush Estate, EH26 0QB, Penicuik, Midlothian, UK
| | - Mark Bolton
- RSPB Centre for Conservation Science, AB15 6GZ, Aberdeen, UK
| | - Francis Daunt
- UK Centre for Ecology & Hydrology, Bush Estate, EH26 0QB, Penicuik, Midlothian, UK
| | - Kate R Searle
- UK Centre for Ecology & Hydrology, Bush Estate, EH26 0QB, Penicuik, Midlothian, UK
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2
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McClelland SC, Attard MRG, Bowen J, Horrocks NPC, Jamie GA, Dixit T, Spottiswoode CN, Portugal SJ. Eggshell composition and surface properties of avian brood-parasitic species compared with non-parasitic species. ROYAL SOCIETY OPEN SCIENCE 2023; 10:221023. [PMID: 37234505 PMCID: PMC10206472 DOI: 10.1098/rsos.221023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Accepted: 05/05/2023] [Indexed: 05/28/2023]
Abstract
The eggs of avian obligate brood-parasitic species have multiple adaptations to deceive hosts and optimize development in host nests. While the structure and composition of the eggshell in all birds is essential for embryo growth and protection from external threats, parasitic eggs may face specific challenges such as high microbial loads, rapid laying and ejection by the host parents. We set out to assess whether eggshells of avian brood-parasitic species have either (i) specialized structural properties, to meet the demands of a brood-parasitic strategy or (ii) similar structural properties to eggs of their hosts, due to the similar nest environment. We measured the surface topography (roughness), wettability (how well surfaces repel water) and calcium content of eggshells of a phylogenetically and geographically diverse range of brood-parasitic species (representing four of the seven independent lineages of avian brood-parasitic species), their hosts and close relatives of the parasites. These components of the eggshell structure have been demonstrated previously to influence such factors as the risk of microbial infection and overall shell strength. Within a phylogenetically controlled framework, we found no overall significant differences in eggshell roughness, wettability and calcium content between (i) parasitic and non-parasitic species, or (ii) parasitic species and their hosts. Both the wettability and calcium content of the eggs from brood-parasitic species were not more similar to those of their hosts' eggs than expected by chance. By contrast, the mean surface roughness of the eggs of brood-parasitic species was more similar to that of their hosts' eggs than expected by chance, suggesting brood-parasitic species may have evolved to lay eggs that match the host nest environment for this trait. The lack of significant overall differences between parasitic and non-parasitic species, including hosts, in the traits we measured, suggests that phylogenetic signal, as well as general adaptations to the nest environment and for embryo development, outweigh any influence of a parasitic lifestyle on these eggshell properties.
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Affiliation(s)
- Stephanie C. McClelland
- Department of Biological Sciences, School of Life and Environmental Sciences, Royal Holloway University of London, Egham, Surrey TW20 0EX, UK
| | - Marie R. G. Attard
- Department of Biological Sciences, School of Life and Environmental Sciences, Royal Holloway University of London, Egham, Surrey TW20 0EX, UK
- School of Engineering and Innovation, Open University, Milton Keynes MK7 6AA, UK
| | - James Bowen
- School of Engineering and Innovation, Open University, Milton Keynes MK7 6AA, UK
| | - Nicholas P. C. Horrocks
- Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
- Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, Cambridge University, Cambridge CB2 0AW, UK
| | - Gabriel A. Jamie
- Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
- FitzPatrick Institute of African Ornithology, DST-NRF Centre of Excellence, University of Cape Town, Rondebosch 7701, Cape Town, South Africa
| | - Tanmay Dixit
- Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
- FitzPatrick Institute of African Ornithology, DST-NRF Centre of Excellence, University of Cape Town, Rondebosch 7701, Cape Town, South Africa
| | - Claire N. Spottiswoode
- Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
- FitzPatrick Institute of African Ornithology, DST-NRF Centre of Excellence, University of Cape Town, Rondebosch 7701, Cape Town, South Africa
| | - Steven J. Portugal
- Department of Biological Sciences, School of Life and Environmental Sciences, Royal Holloway University of London, Egham, Surrey TW20 0EX, UK
- The Natural History Museum, Tring, Herts HP23 6AP, UK
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3
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Meiri S, Levin E. Revisiting life history and morphological proxies for early mammaliaform metabolic rates. Nat Commun 2022; 13:5562. [PMID: 36151068 PMCID: PMC9508135 DOI: 10.1038/s41467-022-32715-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Accepted: 08/12/2022] [Indexed: 11/09/2022] Open
Affiliation(s)
- Shai Meiri
- School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel. .,The Steinhardt Museum of Natural History, Tel Aviv University, Tel Aviv, Israel.
| | - Eran Levin
- School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
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4
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Kohles JE, O'Mara MT, Dechmann DKN. A conceptual framework to predict social information use based on food ephemerality and individual resource requirements. Biol Rev Camb Philos Soc 2022; 97:2039-2056. [PMID: 35932159 DOI: 10.1111/brv.12881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Revised: 06/03/2022] [Accepted: 06/08/2022] [Indexed: 11/02/2022]
Abstract
Environmental variability poses a range of challenges to foraging animals trying to meet their energetic needs. Where food patches are unpredictable but shareable, animals can use social information to locate patches more efficiently or reliably. However, resource unpredictability can be heterogeneous and complex. The behavioural strategies animals employ to exploit such resources also vary, particularly if, when, and where animals use available social information. We reviewed the literature on social information use by foraging animals and developed a novel framework that integrates four elements - (1) food resource persistence; (2) the relative value of social information use; (3) behavioural context (opportunistic or coordinated); and (4) location of social information use - to predict and characterize four strategies of social information use - (1) local enhancement; (2) group facilitation; (3) following; and (4) recruitment. We validated our framework by systematically reviewing the growing empirical literature on social foraging in bats, an ideal model taxon because they exhibit extreme diversity in ecological niche and experience low predation risk while foraging but function at high energy expenditures, which selects for efficient foraging behaviours. Our framework's predictions agreed with the observed natural behaviour of bats and identified key knowledge gaps for future studies. Recent advancements in technology, methods, and analysis will facilitate additional studies in bats and other taxa to further test the framework and our conception of the ecological and evolutionary forces driving social information use. Understanding the links between food distribution, social information use, and foraging behaviour will help elucidate social interactions, group structure, and the evolution of sociality for species across the animal kingdom.
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Affiliation(s)
- Jenna E Kohles
- Department of Migration, Max Planck Institute of Animal Behavior, Am Obstberg 1, 78315, Radolfzell, Germany.,Centre for the Advanced Study of Collective Behaviour, University of Konstanz, Universitätsstraße 10, 78464, Konstanz, Germany.,Department of Biology, University of Konstanz, Universitätsstraße 10, 78464, Konstanz, Germany.,Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Panama
| | - M Teague O'Mara
- Department of Migration, Max Planck Institute of Animal Behavior, Am Obstberg 1, 78315, Radolfzell, Germany.,Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Panama.,Department of Biological Sciences, Southeastern Louisiana University, 808 N. Pine Street, Hammond, LA, 70402, USA
| | - Dina K N Dechmann
- Department of Migration, Max Planck Institute of Animal Behavior, Am Obstberg 1, 78315, Radolfzell, Germany.,Centre for the Advanced Study of Collective Behaviour, University of Konstanz, Universitätsstraße 10, 78464, Konstanz, Germany.,Department of Biology, University of Konstanz, Universitätsstraße 10, 78464, Konstanz, Germany.,Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Panama
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5
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Menezes JCT, Palaoro AV. Flight hampers the evolution of weapons in birds. Ecol Lett 2022; 25:624-634. [PMID: 35199923 DOI: 10.1111/ele.13964] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Revised: 12/08/2021] [Accepted: 12/24/2021] [Indexed: 12/01/2022]
Abstract
Birds are a remarkable example of how sexual selection can produce diverse ornaments and behaviours. Specialised fighting structures like deer's antlers, in contrast, are mostly absent among birds. Here, we investigated if the birds' costly mode of locomotion-powered flight-helps explain the scarcity of weapons among members of this clade. Our simulations of flight energetics predicted that the cost of bony spurs-a specialised avian weapon-should increase with time spent flying. Bayesian phylogenetic comparative analyses using a global spur dataset corroborated this prediction. First, extant species with flight-efficient wings (which presumably fly more frequently) tend to have fewer or no bony spurs. Second, this association likely arose because flying more leads to more frequent evolutionary loss of spurs. Together, these findings suggest that, much like pneumatic bones, absence of weaponry may be another feature of the avian body plan that allows birds to efficiently explore the aerial habitat.
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Affiliation(s)
- João C T Menezes
- Organismic and Evolutionary Biology Graduate Program, University of Massachusetts Amherst, Amherst, Massachusetts, USA
| | - Alexandre V Palaoro
- Department of Ecology and Evolutionary Biology, Federal University of São Paulo, Diadema, SP, Brazil.,Programa de Pós-Graduação em Ecologia, University of São Paulo, São Paulo, SP, Brazil
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6
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McClelland SC, Reynolds M, Cordall M, Hauber ME, Goymann W, McClean LA, Hamama S, Lund J, Dixit T, Louder MIM, Safari I, Honza M, Spottiswoode CN, Portugal SJ. Embryo movement is more frequent in avian brood parasites than birds with parental reproductive strategies. Proc Biol Sci 2021; 288:20211137. [PMID: 34702076 PMCID: PMC8548802 DOI: 10.1098/rspb.2021.1137] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Accepted: 10/04/2021] [Indexed: 12/24/2022] Open
Abstract
Movement of the embryo is essential for musculoskeletal development in vertebrates, yet little is known about whether, and why, species vary. Avian brood parasites exhibit feats of strength in early life as adaptations to exploit the hosts that rear them. We hypothesized that an increase in embryonic movement could allow brood parasites to develop the required musculature for these demands. We measured embryo movement across incubation for multiple brood-parasitic and non-parasitic bird species. Using a phylogenetically controlled analysis, we found that brood parasites exhibited significantly increased muscular movement during incubation compared to non-parasites. This suggests that increased embryo movement may facilitate the development of the stronger musculoskeletal system required for the demanding tasks undertaken by young brood parasites.
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Affiliation(s)
- Stephanie C. McClelland
- Department of Biological Sciences, School of Life and Environmental Sciences, Royal Holloway University of London, Egham, Surrey TW20 0EX, UK
| | - Miranda Reynolds
- Department of Biological Sciences, School of Life and Environmental Sciences, Royal Holloway University of London, Egham, Surrey TW20 0EX, UK
| | - Molly Cordall
- Department of Biological Sciences, School of Life and Environmental Sciences, Royal Holloway University of London, Egham, Surrey TW20 0EX, UK
| | - Mark E. Hauber
- Department of Evolution, Ecology, and Behavior, School of Integrative Biology, University of Illinois, Urbana-Champaign, IL 61801, USA
- American Museum of Natural History, New York, NY 10024, USA
| | - Wolfgang Goymann
- Max-Planck-Institut für Ornithologie, Abteilung für Verhaltensneurobiologie, Eberhard-Gwinner-Str. 6a, D-82319 Seewiesen, Germany
- Coucal Project, PO Box 26, Chimala, Tanzania
| | - Luke A. McClean
- FitzPatrick Institute of African Ornithology, DST-NRF Centre of Excellence, University of Cape Town, Rondebosch 7701, Cape Town, South Africa
| | - Silky Hamama
- c/o Musumanene Farm, PO Box 630038, Choma, Zambia
| | - Jess Lund
- Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
- FitzPatrick Institute of African Ornithology, DST-NRF Centre of Excellence, University of Cape Town, Rondebosch 7701, Cape Town, South Africa
| | - Tanmay Dixit
- Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
| | - Matthew I. M. Louder
- Department of Evolution, Ecology, and Behavior, School of Integrative Biology, University of Illinois, Urbana-Champaign, IL 61801, USA
| | - Ignas Safari
- Max-Planck-Institut für Ornithologie, Abteilung für Verhaltensneurobiologie, Eberhard-Gwinner-Str. 6a, D-82319 Seewiesen, Germany
- Coucal Project, PO Box 26, Chimala, Tanzania
- Department of Biology, University of Dodoma, PO Box 338, Dodoma, Tanzania
| | - Marcel Honza
- The Czech Academy of Sciences, Institute of Vertebrate Biology, Květná 8, 603 65 Brno, Czech Republic
| | - Claire N. Spottiswoode
- Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
- FitzPatrick Institute of African Ornithology, DST-NRF Centre of Excellence, University of Cape Town, Rondebosch 7701, Cape Town, South Africa
| | - Steven J. Portugal
- Department of Biological Sciences, School of Life and Environmental Sciences, Royal Holloway University of London, Egham, Surrey TW20 0EX, UK
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7
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Nabi G, Wang Y, Lü L, Jiang C, Ahmad S, Wu Y, Li D. Bats and birds as viral reservoirs: A physiological and ecological perspective. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 754:142372. [PMID: 33254850 PMCID: PMC7505891 DOI: 10.1016/j.scitotenv.2020.142372] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Revised: 08/31/2020] [Accepted: 09/11/2020] [Indexed: 05/04/2023]
Abstract
The birds (class Aves) and bats (order Chiroptera, class Mammalia) are well known natural reservoirs of a diverse range of viruses, including some zoonoses. The only extant volant vertebrates, bats and birds have undergone dramatic adaptive radiations that have allowed them to occupy diverse ecological niches and colonize most of the planet. However, few studies have compared the physiology and ecology of these ecologically, and medically, important taxa. Here, we review convergent traits in the physiology, immunology, flight-related ecology of birds and bats that might enable these taxa to act as viral reservoirs and asymptomatic carriers. Many species of birds and bats are well adapted to urban environments and may host more zoonotic pathogens than species that do not colonize anthropogenic habitats. These convergent traits in birds and bats and their ecological interactions with domestic animals and humans increase the potential risk of viral spillover transmission and facilitate the emergence of novel viruses that most likely sources of zoonoses with the potential to cause global pandemics.
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Affiliation(s)
- Ghulam Nabi
- Key Laboratory of Animal Physiology, Biochemistry and Molecular Biology of Hebei Province, College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Yang Wang
- Key Laboratory of Animal Physiology, Biochemistry and Molecular Biology of Hebei Province, College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Liang Lü
- Key Laboratory of Animal Physiology, Biochemistry and Molecular Biology of Hebei Province, College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Chuan Jiang
- Key Laboratory of Animal Physiology, Biochemistry and Molecular Biology of Hebei Province, College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Shahid Ahmad
- Key Laboratory of Animal Physiology, Biochemistry and Molecular Biology of Hebei Province, College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Yuefeng Wu
- Key Laboratory of Animal Physiology, Biochemistry and Molecular Biology of Hebei Province, College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Dongming Li
- Key Laboratory of Animal Physiology, Biochemistry and Molecular Biology of Hebei Province, College of Life Sciences, Hebei Normal University, Shijiazhuang, China.
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8
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Abstract
Sympatric species must sufficiently differentiate aspects of their ecological niche to alleviate complete interspecific competition and stably coexist within the same area. Seabirds provide a unique opportunity to understand patterns of niche segregation among coexisting species because they form large multi-species colonies of breeding aggregations with seemingly overlapping diets and foraging areas. Recent biologging tools have revealed that colonial seabirds can differentiate components of their foraging strategies. Specifically, small, diving birds with high wing-loading may have small foraging radii compared with larger or non-diving birds. In the Gulf of St-Lawrence in Canada, we investigated whether and how niche differentiation occurs in four incubating seabird species breeding sympatrically using GPS-tracking and direct field observations of prey items carried by adults to chicks: the Atlantic puffin (Fratercula arctica), razorbill (Alca torda), common murre (Uria aalge), and black-legged kittiwake (Rissa tridactyla). Although there was overlap at foraging hotspots, all species differentiated in either diet (prey species, size and number) or foraging range. Whereas puffins and razorbills consumed multiple smaller prey items that were readily available closer to the colony, murres selected larger more diverse prey that were accessible due to their deeper diving capability. Kittiwakes compensated for their surface foraging by having a large foraging range, including foraging largely at a specific distant hotspot. These foraging habitat specialisations may alleviate high interspecific competition allowing for their coexistence, providing insight on multispecies colonial living.
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9
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Hedh L, Guglielmo CG, Johansson LC, Deakin JE, Voigt CC, Hedenström A. Measuring power input, power output and energy conversion efficiency in un-instrumented flying birds. J Exp Biol 2020; 223:jeb223545. [PMID: 32796040 DOI: 10.1242/jeb.223545] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Accepted: 08/05/2020] [Indexed: 11/20/2022]
Abstract
Cost of flight at various speeds is a crucial determinant of flight behaviour in birds. Aerodynamic models, predicting that mechanical power (Pmech) varies with flight speed in a U-shaped manner, have been used together with an energy conversion factor (efficiency) to estimate metabolic power (Pmet). Despite few empirical studies, efficiency has been assumed constant across flight speeds at 23%. Ideally, efficiency should be estimated from measurements of both Pmech and Pmet in un-instrumented flight. Until recently, progress has been hampered by methodological constraints. The main aim of this study was to evaluate recently developed techniques and estimate flight efficiency across flight speeds. We used the 13C-labelled sodium bicarbonate method (NaBi) and particle image velocimetry (PIV) to measure Pmet and Pmech in blackcaps flying in a wind tunnel. We also cross-validated measurements made by NaBi with quantitative magnetic resonance (QMR) body composition analysis in yellow-rumped warblers. We found that Pmet estimated by NaBi was ∼12% lower than corresponding values estimated by QMR. Pmet varied in a U-shaped manner across flight speeds in blackcaps, but the pattern was not statistically significant. Pmech could only be reliably measured for two intermediate speeds and estimated efficiency ranged between 14% and 22% (combining the two speeds for raw and weight/lift-specific power, with and without correction for the ∼12% difference between NaBi and QMR), which were close to the currently used default value. We conclude that NaBi and PIV are viable techniques, allowing researchers to address some of the outstanding questions regarding bird flight energetics.
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Affiliation(s)
- Linus Hedh
- Department of Biology, Lund University, 223 62 Lund, Sweden
| | - Christopher G Guglielmo
- Department of Biology, Advanced Facility for Avian Research, University of Western Ontario, London, ON, Canada, N6A 5B7
| | | | - Jessica E Deakin
- Department of Biology, Advanced Facility for Avian Research, University of Western Ontario, London, ON, Canada, N6A 5B7
| | - Christian C Voigt
- Department of Evolutionary Ecology, Leibniz Institute for Zoo and Wildlife Research, Berlin 10315 Germany
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10
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Czenze ZJ, Dunbar M. Body mass affects short‐term heterothermy in Neotropical bats. Biotropica 2020. [DOI: 10.1111/btp.12807] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Zenon J. Czenze
- South African Research Chair in Conservation Physiology South African National Biodiversity Institute Pretoria South Africa
- Mammal Research Institute Department of Zoology and Entomology University of Pretoria Pretoria South Africa
| | - Miranda Dunbar
- Department of Biology Southern Connecticut State University New Haven CT USA
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11
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Dench J, Hinz A, Aris‐Brosou S, Kassen R. Identifying the drivers of computationally detected correlated evolution among sites under antibiotic selection. Evol Appl 2020; 13:781-793. [PMID: 32211067 PMCID: PMC7086105 DOI: 10.1111/eva.12900] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Revised: 10/02/2019] [Accepted: 11/14/2019] [Indexed: 11/29/2022] Open
Abstract
The ultimate causes of correlated evolution among sites in a genome remain difficult to tease apart. To address this problem directly, we performed a high-throughput search for correlated evolution among sites associated with resistance to a fluoroquinolone antibiotic using whole-genome data from clinical strains of Pseudomonas aeruginosa, before validating our computational predictions experimentally. We show that for at least two sites, this correlation is underlain by epistasis. Our analysis also revealed eight additional pairs of synonymous substitutions displaying correlated evolution underlain by physical linkage, rather than selection associated with antibiotic resistance. Our results provide direct evidence that both epistasis and physical linkage among sites can drive the correlated evolution identified by high-throughput computational tools. In other words, the observation of correlated evolution is not by itself sufficient evidence to guarantee that the sites in question are epistatic; such a claim requires additional evidence, ideally coming from direct estimates of epistasis, based on experimental evidence.
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Affiliation(s)
- Jonathan Dench
- Department of BiologyUniversity of OttawaOttawaOntarioCanada
| | - Aaron Hinz
- Department of BiologyUniversity of OttawaOttawaOntarioCanada
| | - Stéphane Aris‐Brosou
- Department of BiologyUniversity of OttawaOttawaOntarioCanada
- Department of Mathematics and StatisticsUniversity of OttawaOttawaOntarioCanada
| | - Rees Kassen
- Department of BiologyUniversity of OttawaOttawaOntarioCanada
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