Fabrication and characterization of gold nano particles for DNA biosensor applications

Efficient and high-quality absorption enhancement using epsilon-near-zero cylindrical nano-shells constructed by graphene

This paper presents a detailed scattering analysis of a hollow-core plasmonic-shell cylindrical wire to design an efficient, compact, narrowband, and reconfigurable optical absorber. The shell is formed by a thin graphene material, investigated in its epsilon-near-zero (ENZ) plasmonic region. Compared to the graphene plasmonic resonances in the terahertz(THz)/far-infrared (FIR) frequencies, the ENZ plasmonic resonances offer a blue shift in the operating frequency of the second-order plasmonic resonances by increasing the geometrical dimensions. This feature is successfully used to design efficient optical wave absorbers with absorption cross-sections much larger than geometrical and scattering cross-sections. The observed blue shift in the resonance spectrum, which is the key point of the design, is further verified by defining each particle with its polarizability and fulfilling the resonant scattering condition in the framework of Mie's theory. Furthermore, graphene relaxation time and chemical potential can be used to manipulate the absorption rate. Observed resonances have narrow widths, achieved with simple geometry. To consider more practical scenarios, the one-dimensional arrangement of the cylindrical elements as a dense and sparse array is also considered and the design key point regarding graphene quality is revealed. The quality factor of the sparse array resonance is 2272.8 and it demands high-quality graphene material in design. It is also observed that due to the use of small particles in the design, the near-field and cooperative effects are not visible in the absorption cross-section of the array and a clear single peak is attained. This polarization-insensitive absorber can tolerate a wide range of incident angles with an absorption rate above 90%.

Improvement of Seed-Mediated Growth of Gold Nanoparticle Labels for DNA Membrane-Based Assays

Gold nanoparticles (AuNPs) are popular labels for colorimetric detection of various analytes, involving proteins, nucleic acids, viruses, and whole cells because of their outstanding optical properties, inertness, and modification variability. In this work, we present an improved approach for enhancement of color intensity for DNA membrane microarrays based on seed-mediated growth of AuNP labels. Biotin-labeled DNA is hybridized with capture oligonucleotide probes immobilized on the microarrays. Then biotin is revealed by a streptavidin-AuNP conjugate followed by the detection of AuNPs. Optimization of seed-mediated enlargement of AuNPs by the reduction of tetrachloroauric acid with hydroxylamine made it possible to change the coloring of specific spots on the microarrays from pink to a more contrasting black with minor background staining. Mean size of the resulting AuNPs was four times larger than before the enhancement. Adjusting the pH of HAuCl₄ solution to 3.5 and use of a large excess of hydroxylamine increased the signal/background ratio by several times. The method's applicability was demonstrated for quantification of a short oligonucleotide of 19 bases and full-length TEM-type β-lactamase genes of 860 bp responsible for the development of bacterial resistance against β-lactam antibiotics. Improved protocol for AuNP enlargement may be further transferred to any other membrane-based assays of nucleic acids with both instrumental and visual colorimetric detection.

Influence of Ag Electrodes Asymmetry Arrangement on Their Erosion Wear and Nanoparticle Synthesis in Spark Discharge

For nanoparticle synthesis in a spark discharge, the influence of the degree of electrode asymmetry in the rod-to-rod configuration, using the example of silver electrodes, on the energy efficiency and nanoparticle composition is studied. The asymmetry degree was determined by the angle between electrodes’ end faces. Two types of discharge current pulses were used: oscillation-damped and unipolar, in which electrodes changed their polarities and had a constant polarity during a single discharge, respectively. A significant influence of the asymmetry degree of the electrode arrangement on the synthesized nanoparticle size, agglomeration and concentration, and on the synthesis energy efficiency, has been established. An increase in the degree of the electrode asymmetry with the oscillation-damped discharge current pulse led to an increased mass production rate and energy efficiency of nanoparticle synthesis, a significant fraction of which had large dimensions of more than 40 nm. The effect of the transfer of synthesized nanoparticles to the opposite electrode at the unipolar discharge current pulse led to the appearance of electroerosive instability, manifested in the formation of a protrusion on the anode surface, around which spark discharges, leading to its further growth and electrode gap closure.

An Electrochemical DNA Biosensor for Carcinogenicity of Anticancer Compounds Based on Competition between Methylene Blue and Oligonucleotides

A toxicity electrochemical DNA biosensor has been constructed for the detection of carcinogens using 24 base guanine DNA rich single stranded DNA, and methylene blue (MB) as the electroactive indicator. This amine terminated ssDNA was immobilized onto silica nanospheres and deposited on gold nanoparticle modified carbon-paste screen printed electrodes (SPEs). The modified SPE was initially exposed to a carcinogen, followed by immersion in methylene blue for an optimized duration. The biosensor response was measured using differential pulse voltammetry. The performance of the biosensor was identified on several anti-cancer compounds. The toxicity DNA biosensor demonstrated a linear response range to the cadmium chloride from 0.0005 ppm to 0.01 ppm (R² = 0.928) with a limit of detection at 0.0004 ppm. The biosensor also exhibited its versatility to screen the carcinogenicity of potential anti-cancer compounds.

Recent uses of carbon nanotubes & gold nanoparticles in electrochemistry with application in biosensing: A review

The innovation of nanoparticles assumes a critical part of encouraging and giving open doors and conceivable outcomes to the headway of new era devices utilized as a part of biosensing. The focused on the quick and legitimate detecting of specific biomolecules using functionalized gold nanoparticles (Au NPs), and carbon nanotubes (CNTs) has turned into a noteworthy research enthusiasm for the most recent decade. Sensors created with gold nanoparticles or carbon nanotubes or in some cases by utilizing both are relied upon to change the very establishments of detecting and distinguishing various analytes. In this review, we will examine the current utilization of functionalized AuNPs and CNTs with other synthetic mixes for the creation of biosensor prompting to the location of particular analytes with low discovery cutoff and quick reaction.

Efficient Fluorescence Resonance Energy Transfer between Quantum Dots and Gold Nanoparticles Based on Porous Silicon Photonic Crystal for DNA Detection

A novel assembled biosensor was prepared for detecting 16S rRNA, a small-size persistent specific for Actinobacteria. The mechanism of the porous silicon (PS) photonic crystal biosensor is based on the fluorescence resonance energy transfer (FRET) between quantum dots (QDs) and gold nanoparticles (AuNPs) through DNA hybridization, where QDs act as an emission donor and AuNPs serve as a fluorescence quencher. Results showed that the photoluminescence (PL) intensity of PS photonic crystal was drastically increased when the QDs-conjugated probe DNA was adhered to the PS layer by surface modification using a standard cross-link chemistry method. The PL intensity of QDs was decreased when the addition of AuNPs-conjugated complementary 16S rRNA was dropped onto QDs-conjugated PS. Based on the analysis of different target DNA concentration, it was found that the decrease of the PL intensity showed a good linear relationship with complementary DNA concentration in a range from 0.25 to 10 μM, and the detection limit was 328.7 nM. Such an optical FRET biosensor functions on PS-based photonic crystal for DNA detection that differs from the traditional FRET, which is used only in liquid. This method will benefit the development of a new optical FRET label-free biosensor on Si substrate and has great potential in biochips based on integrated optical devices.