Reaction mechanisms relevant to the formation of iron and ruthenium nitric oxide complexes

Experimental and Computational Insight into the Mechanism of NO Binding to Ferric Microperoxidase. The Likely Role of Tautomerization to Account for the pH Dependence

According to the current paradigm, the metal-hydroxo bond in a six-coordinate porphyrin complex is believed to be significantly less reactive in ligand substitution than the analogous metal-aqua bond, due to a much higher strength of the former bond. Here, we report kinetic studies for nitric oxide (NO) binding to a heme-protein model, acetylated microperoxidase-11 (AcMP-11), that challenge this paradigm. In the studied pH range 7.4-12.6, ferric AcMP-11 exists in three acid-base forms, assigned in the literature as [(AcMP-11)FeIII(H2O)(HisH)] (1), [(AcMP-11)FeIII(OH)(HisH)] (2), and [(AcMP-11)FeIII(OH)(His-)] (3). From the pH dependence of the second-order rate constant for NO binding (kon), we determined individual rate constants characterizing forms 1-3, revealing only a ca. 10-fold decrease in the NO binding rate on going from 1 (kon(1) = 3.8 × 106 M-1 s-1) to 2 (kon(2) = 4.0 × 105 M-1 s-1) and the inertness of 3. These findings lead to the abandonment of the dissociatively activated mechanism, in which the reaction rate can be directly correlated with the Fe-OH bond energy, as the mechanistic explanation for the process with regard to 2. The reactivity of 2 is accounted for through the existence of a tautomeric equilibrium between the major [(AcMP-11)FeIII(OH)(HisH)] (2a) and minor [(AcMP-11)FeIII(H2O)(His-)] (2b) species, of which the second one is assigned as the NO binding target due to its labile Fe-OH2 bond. The proposed mechanism is further substantiated by quantum-chemical calculations, which confirmed both the significant labilization of the Fe-OH2 bond in the [(AcMP-11)FeIII(H2O)(His-)] tautomer and the feasibility of the tautomer formation, especially after introducing empirical corrections to the computed relative acidities of the H2O and HisH ligands based on the experimental pKa values. It is shown that the "effective lability" of the axial ligand (OH-/H2O) in 2 may be comparable to the lability of the H2O ligand in 1.

Carbon Monoxide and Nitric Oxide as Examples of the Youngest Class of Transmitters

The year 2021 is the 100th anniversary of the confirmation of the neurotransmission phenomenon by Otto Loewi. Over the course of the hundred years, about 100 neurotransmitters belonging to many chemical groups have been discovered. In order to celebrate the 100th anniversary of the confirmation of neurotransmitters, we present an overview of the first two endogenous gaseous transmitters i.e., nitric oxide, and carbon monoxide, which are often termed as gasotransmitters.

A cobalt–nitrosyl complex with a hindered hydrotris(pyrazolyl)borate coligand: detailed electronic structure, and reactivity towards dioxygen

The cobalt–nitrosyl complex [Co(NO)(L3)] is supported by a highly hindered tridentate nitrogen ligand, hydrotris(3-tertiary butyl-5-isopropyl-1-pyrazolyl)borate (denoted as L3⁻), and shows a linear Co–N–O unit.

Recent advances in biosynthetic modeling of nitric oxide reductases and insights gained from nuclear resonance vibrational and other spectroscopic studies

This Forum Article focuses on recent advances in structural and spectroscopic studies of biosynthetic models of nitric oxide reductases (NORs). NORs are complex metalloenzymes found in the denitrification pathway of Earth’s nitrogen cycle where they catalyze the proton-dependent two-electron reduction of nitric oxide (NO) to nitrous oxide (N₂O). While much progress has been made in biochemical and biophysical studies of native NORs and their variants, a clear mechanistic understanding of this important metalloenzyme related to its function is still elusive. We report herein UV–vis and nuclear resonance vibrational spectroscopy (NRVS) studies of mononitrosylated intermediates of the NOR reaction of a biosynthetic model. The ability to selectively substitute metals at either heme or nonheme metal sites allows the introduction of independent ⁵⁷Fe probe atoms at either site, as well as allowing the preparation of analogues of stable reaction intermediates by replacing either metal with a redox inactive metal. Together with previous structural and spectroscopic results, we summarize insights gained from studying these biosynthetic models toward understanding structural features responsible for the NOR activity and its mechanism. The outlook on NOR modeling is also discussed, with an emphasis on the design of models capable of catalytic turnovers designed based on close mimics of the secondary coordination sphere of native NORs.

New insights into nitric oxide reductases (NORs) are obtained. Using nuclear resonance vibrational spectroscopy, we probe both iron atoms in mononitrosylated intermediates of the NOR reaction in a biosynthetic protein model that reveal new insights into the structural and electronic features responsible for the NOR activity and its likely mechanism.

Ru–NO and Ru–NO2bonding linkage isomerism in cis-[Ru(NO)(NO)(bpy)2]2+/+complexes – a theoretical insight

Calculated energy profile (kcal mol⁻¹) for linkage isomers relative to the ground state structure (GS)1aprior the monoelectronic reduction.

The Preparation, Structural Characteristics, and Physical Chemical Properties of Metal-Nitrosyl Complexes

The preparation and characterization of a representative group of novel non-heme metal nitrosyl complexes that have been synthesized over the last decade are discussed here. Their structures are examined and classified based on metal type, the number of metal centers present, and the type of ligand that is coordinated with the metal. The ligands can be phosphorus, nitrogen, or sulfur based (with a few exceptions) and can vary depending on the presence of chelation, intermolecular forces, or the presence of other ligands. Structural and bonding characteristics are summarized and examples of reactivity regarding nitrosyl ligands are given. Some of the relevant physical chemical properties of these complexes, including IR, EPR, NMR, UV-vis, cyclic voltammetry, and X-ray crystallography are examined.

Interaction of nitric oxide with Ru(II) complexes of deuteroporphyrindimethylester derivatives

A new ruthenium(II) porphyrin disulphide derivative, [ Ru ( Pds )( CO )], was obtained from ruthenium(II)(carbonyl)deuteroporphyrin(IX), [ Ru ( DPdc )( CO )] and cystamine. The interaction of this complex with nitric oxide was studied spectrophotometrically and a bathochromic shift of the charge transfer band and considerable change in the α and β bands of the complex were observed. According to the IR spectrum, the product of this interaction is [ Ru ( DmDP )( NO +)( NO 2-)]. [ Ru ( Pds )( CO )] was then self-assembled on polycrystalline gold and characterized by X-ray photoelectron spectroscopy. [ Ru ( Pds )( CO )] was also self-assembled on gold electrode beads and its interaction with nitric oxide in aqueous solution was studied by cyclic voltammetry. A shift in the ruthenium redox process and a new irreversible cathodic peak at -0.59 V were observed, both indicating coordination of NO .

Structural and electronic characterization of non-heme Fe(II)-nitrosyls as biomimetic models of the Fe(B) center of bacterial nitric oxide reductase

The detoxification of nitric oxide (NO) by bacterial NO reductase (NorBC) has gained much attention as this reaction provides a paradigm as to how NO can be detoxified anaerobically in cells. However, a clear mechanistic picture of how the heme/non-heme active site of NorBC activates NO is lacking, mostly as a result of insufficient knowledge about the properties of the non-heme iron(II)-NO adduct. Here we report the first biomimetic model complexes for this species that closely resemble the coordination environment found in the protein, using the ligands BMPA-Pr and TPA. The systematic investigation of these compounds allowed us to gain key insight into the electronic structure and geometric properties of high-spin non-heme iron(II)-NO adducts. In particular, we show how small changes in the ligand environment of iron could be used by NorBC to greatly modulate the properties, and hence, the reactivity of this species.

Probing the surfaces of heterogeneous catalysts by in situ IR spectroscopy

This critical review describes the reactivity of heterogeneous catalysts from the point of view of four simple, but essential for Chemistry, molecules (namely dihydrogen, carbon monoxide, nitrogen monoxide and ethylene) that are considered as probes or as reactants in combination with "in situ" controlled temperature and pressure Infrared spectroscopy. The fundamental properties of H(2), CO, NO and C(2)H(4) are shortly described in order to justify their different behaviour in respect of isolated sites in different environments, extended surfaces, clusters, crystalline or amorphous materials. The description is given by considering some "key studies" and trying to evidence similarities and differences among surfaces and probes (572 references).

Carbon monoxide and nitrogen monoxide ligand dynamics in synthetic heme and heme-copper complex systems

Intermolecular nitrogen monoxide (*NO) and carbon monoxide (CO) transfer from iron to copper and back, a phenomenon not previously observed, has been accomplished by employing transient-absorbance laser flash photolysis methods. A 1:1 heme/copper component system consisting of a six-coordinate ferrous species, F(8)Fe(II)(CO)(DCIM) or F(8)Fe(II)(NO)(thf) [F(8) = tetrakis(2,6-difluorophenyl)porphyrinate(2-); DCIM = 1,5-dicyclohexylimidazole; thf = tetrahydrofuran], and two ligand-copper(I) complexes, one with tridentate [(Bz)L = (benzyl)bis(2-pyridylmethyl)amine] and one with tetradentate coordination [(Py)L = tris(2-pyridylmethyl)amine], was utilized. The results suggest a lower affinity for NO versus CO binding to copper(I) and a higher rate for NO versus CO binding to heme. In fact, the latter event has been observed in cytochrome c oxidase aa(3).

Syntheses, structures, and photochemistry of manganese nitrosyls derived from designed Schiff base ligands: potential NO donors that can be activated by near-infrared light

Two manganese nitrosyls, namely, [Mn(SBPy(3))(NO)](ClO(4))(2) (1) and [Mn(SBPy(2)Q)(NO)](ClO(4))(2) (2), have been synthesized by using designed pentadentate Schiff base ligands N,N-bis(2-pyridylmethyl)amine-N-ethyl-2-pyridine-2-aldimine (SBPy(3)) and N,N-bis(2-pyridyl methyl)amine-N-ethyl-2-quinoline-2-aldimine (SBPy(2)Q). Reaction of NO(g) with [Mn(SBPy(3))(MeOH)](ClO(4))(2) and [Mn(SBPy(2)Q)(EtOH)](ClO(4))(2) in MeCN affords 1 and 2, respectively, in good yields. Narrow-width peaks in the (1)H NMR spectra and strong nu(NO) at 1773 cm(-1) (of 1) and 1759 cm(-1) (of 2) confirm a strongly coupled {low-spin Mn(II)-NO*}formulation for both these {Mn-NO}(6) nitrosyls. In MeCN, 1 exhibits two strong absorption bands with lambda(max) at 500 and 720 nm. These bands red shift to 550 and 785 nm in case of 2 because of substitution of the pyridyl-imine moiety of SBPy(3) with quinolyl-imine moiety in the SBPy(2)Q ligand frame. Exposure of solutions 1 and 2 to near-infrared (NIR) light (780 nm, 5 mW) results in rapid bleaching of the orange and fuchsia solutions, and free NO is detected in the solutions by an NO-sensitive electrode. The high quantum yield values (Phi) of 1 (0.580 +/- 0.010, lambda(irr) = 550 nm, MeCN) and 2 (0.434 +/- 0.010, lambda(irr) = 550 nm, MeCN) and in particular their sensitivity to NIR light of 800-950 nm range strongly suggest that these designed manganese nitrosyls could be used as NIR light-triggered NO donors.

In vitro metabolism study of a new nitrosyl ruthenium complex [Ru(NH.NHq)(terpy)NO]3+ nitric oxide donor using rat microsomes

A new nitrosyl ruthenium complex [Ru(NH.NHq)(terpy)NO](3+) nitric oxide donor was recently developed and due to its excellent vasodilator activity, it has been considered as a potential drug candidate. Drug metabolism is one of the main parameters that should be evaluated in the early drug development, so the biotransformation of this complex by rat hepatic microsomes was investigated. In order to perform the biotransformation study, a simple, sensitive and selective HPLC method was developed and carefully validated. The parameters evaluated in the validation procedure were: linearity, recovery, precision, accuracy, selectivity and stability. Except for the stability study, all the parameters evaluated presented values below the recommended by FDA guidelines. The stability study showed a time-dependent degradation profile. After method validation, the biotransformation study was accomplished and the kinetic parameters were determined. The biotransformation study obeyed the Michaelis-Menten kinetics. The V(max) and K(m) were, respectively, 0.1625+/-0.010 micromol/mg protein/min and 79.97+/-11.52 microM. These results indicate that the nitrosyl complex is metabolized by CYP450.

Heme-copper assembly mediated reductive coupling of nitrogen monoxide (*NO)

A iron-dinitrosyl species ((6)L)Fe(NO)(2) (2), generated from nitrogen monoxide (*NO) binding to its related iron(II)-mononitrosyl complex ((6)L)Fe(NO) (1), efficiently effects reductive coupling of two *NO molecules to release nitrous oxide (N(2)O), when Cu(+) ion and 2 equiv acid are added; the heme/Cu product is [((6)L)Fe(III)...Cu(II)(D)](3+) (D = H(2)O or MeCN). In a control experiment where only ((6)L)Fe(NO)(2) (2) is exposed to 2 equiv acid, no UV-vis change is observed; upon warming, *NO((g)) is released and ((6)L)Fe(NO) is reformed. The copper ion complex within the (6)L ligand framework is required for the *NO coupling chemistry. In a further control experiment Cu(+) ion is added to ((6)L)Fe(NO)(2) without acid present, [((6)L)Fe(NO)...Cu(II)(NO(2)(-))](+) is obtained, with the amount of N(2)O((g)) released fitting with copper(I) ion promoted disproportionation chemistry, 3*NO + ligand-Cu(I) --> N(2)O + ligand-Cu(II)(NO(2)(-)). The chemical system described represents a (stoichiometric) functional model for heme/Cu protein nitric oxide reductase activity.

Unravelling the intrinsic features of NO binding to iron(II)- and iron(III)-hemes

Electrospray ionization of appropriate precursors is used to deliver [Fe (III)-heme] (+) and [Fe (II)-hemeH] (+) ions as naked species in the gas phase where their ion chemistry has been examined by Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry. In the naked, four-coordinate [Fe (II)-hemeH] (+) and [Fe (III)-heme] (+) ions, the intrinsic reactivity of iron(II)- and iron(III)-hemes is revealed free from any influence due to axial ligand, counterion, or solvent effects. Ligand (L) addition and ligand transfer equilibria with a series of selected neutrals are attained when [Fe (II)-hemeH] (+), corresponding to protonated Fe (II)-heme, is allowed to react in the FT-ICR cell. A Heme Cation Basicity (HCB) ladder for the various ligands toward [Fe (II)-hemeH] (+), corresponding to -Delta G degrees for the process [Fe (II)-hemeH] (+) + L --> [Fe (II)-hemeH(L)] (+) and named HCB (II), can thus be established. The so-obtained HCB (II) values are compared with the corresponding HCB (III) values for [Fe (III)-heme] (+). In spite of pronounced differences displayed by various ligands, NO shows a quite similar HCB of about 67 kJ mol (-1) at 300 K toward both ions, estimated to correspond to a binding energy of 124 kJ mol (-1). Density Functional Theory (DFT) computations confirm the experimental results, yielding very similar values of NO binding energies to [Fe (II)-hemeH] (+) and [Fe (III)-heme] (+), equal to 140 and 144 kJ mol (-1), respectively. The kinetic study of the NO association reaction supports the equilibrium HCB data and reveals that the two species share very close rate constant values both for the forward and for the reverse reaction. These gas phase results diverge markedly from the kinetics and thermodynamic behavior of NO binding to iron(II)- and iron(III)-heme proteins and model complexes in solution. The requisite of either a very labile or a vacant coordination site on iron for a facile addition of NO to occur, suggested to explain the bias for typically five-coordinate iron(II) species in solution, is fully supported by the present work.

Surface coordination of nitric oxide to a self-assembled monolayer of a triruthenium cluster: an in situ infrared spectroscopic study

Coordination of nitric oxide (NO) to a self-assembled monolayer (SAM) of a triruthenium (Ru(3)) cluster, [Ru(3)(micro(3)-O)(micro-CH(3)COO)(6)(CO)(L(1))(L(2))] (0) (L(1) = [(NC(5)H(4))CH(2)NHC(O)(CH(2))(10)S-](2), L(2) = 4-methylpyridine), on a gold electrode surface has been studied by electrochemical and in situ infrared (IR) spectroscopic measurements. Ligand substitution reaction of NO for carbon monoxide (CO) ligands in the SAM strongly depends on the oxidation state of the terminal Ru(3) cluster. NO can be introduced into the Ru(3) cluster in the SAM with a high yield after one-electron oxidation of the Ru(3) core to a (III,III,III) oxidation state, while no coordination reaction occurs at the initial oxidation state (II,III,III) of the Ru(3) cluster. The kinetics of the NO coordination and desorption processes is also evaluated by time-resolved in situ IR spectroscopy. Finally, we demonstrate that the SAM with NO/CO randomly mixed ligands at a desired ratio can be constructed on the gold surface by tuning a suitable oxidation state of the Ru 3 cluster under electrochemical control.