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Acosta-Angulo B, Lara-Ramos J, Niño-Vargas A, Diaz-Angulo J, Benavides-Guerrero J, Bhattacharya A, Cloutier S, Machuca-Martínez F. Unveiling the potential of machine learning in cost-effective degradation of pharmaceutically active compounds: A stirred photo-reactor study. CHEMOSPHERE 2024; 358:142222. [PMID: 38714249 DOI: 10.1016/j.chemosphere.2024.142222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Revised: 03/30/2024] [Accepted: 04/30/2024] [Indexed: 05/09/2024]
Abstract
In this study, neural networks and support vector regression (SVR) were employed to predict the degradation over three pharmaceutically active compounds (PhACs): Ibuprofen (IBP), diclofenac (DCF), and caffeine (CAF) within a stirred reactor featuring a flotation cell with two non-concentric ultraviolet lamps. A total of 438 datapoints were collected from published works and distributed into 70% training and 30% test datasets while cross-validation was utilized to assess the training reliability. The models incorporated 15 input variables concerning reaction kinetics, molecular properties, hydrodynamic information, presence of radiation, and catalytic properties. It was observed that the Support Vector Regression (SVR) presented a poor performance as the ε hyperparameter ignored large error over low concentration levels. Meanwhile, the Artificial Neural Networks (ANN) model was able to provide rough estimations on the expected degradation of the pollutants without requiring information regarding reaction rate constants. The multi-objective optimization analysis suggested a leading role due to ozone kinetic for a rapid degradation of the contaminants and most of the results required intensification with hydrogen peroxide and Fenton process. Although both models were affected by accuracy limitations, this work provided a lightweight model to evaluate different Advanced Oxidation Processes (AOPs) by providing general information regarding the process operational conditions as well as know molecular and catalytic properties.
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Affiliation(s)
- B Acosta-Angulo
- Escuela de Ingeniería Química, Universidad Del Valle, Santiago de, Cali, 760026, Valle Del Cauca, Colombia
| | - J Lara-Ramos
- Escuela de Ingeniería Química, Universidad Del Valle, Santiago de, Cali, 760026, Valle Del Cauca, Colombia
| | - A Niño-Vargas
- Escuela de Ingeniería Química, Universidad Del Valle, Santiago de, Cali, 760026, Valle Del Cauca, Colombia
| | - J Diaz-Angulo
- Research and Technological Development in Water Treatment, Processes Modelling and Disposal of Residues - GITAM, Cauca, Colombia
| | - J Benavides-Guerrero
- Department of Electrical Engineering, Ecole de Technologia Superieure, 1100 Notre-Dame West, Montreal, H3C 1K3, Quebec, Canada
| | - A Bhattacharya
- Department of Electrical Engineering, Ecole de Technologia Superieure, 1100 Notre-Dame West, Montreal, H3C 1K3, Quebec, Canada
| | - S Cloutier
- Department of Electrical Engineering, Ecole de Technologia Superieure, 1100 Notre-Dame West, Montreal, H3C 1K3, Quebec, Canada
| | - F Machuca-Martínez
- Escuela de Ingeniería Química, Universidad Del Valle, Santiago de, Cali, 760026, Valle Del Cauca, Colombia.
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Jaume-Santero F, Bornet A, Valery A, Naderi N, Vicente Alvarez D, Proios D, Yazdani A, Bournez C, Fessard T, Teodoro D. Transformer Performance for Chemical Reactions: Analysis of Different Predictive and Evaluation Scenarios. J Chem Inf Model 2023; 63:1914-1924. [PMID: 36952584 PMCID: PMC10091402 DOI: 10.1021/acs.jcim.2c01407] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/25/2023]
Abstract
The prediction of chemical reaction pathways has been accelerated by the development of novel machine learning architectures based on the deep learning paradigm. In this context, deep neural networks initially designed for language translation have been used to accurately predict a wide range of chemical reactions. Among models suited for the task of language translation, the recently introduced molecular transformer reached impressive performance in terms of forward-synthesis and retrosynthesis predictions. In this study, we first present an analysis of the performance of transformer models for product, reactant, and reagent prediction tasks under different scenarios of data availability and data augmentation. We find that the impact of data augmentation depends on the prediction task and on the metric used to evaluate the model performance. Second, we probe the contribution of different combinations of input formats, tokenization schemes, and embedding strategies to model performance. We find that less stable input settings generally lead to better performance. Lastly, we validate the superiority of round-trip accuracy over simpler evaluation metrics, such as top-k accuracy, using a committee of human experts and show a strong agreement for predictions that pass the round-trip test. This demonstrates the usefulness of more elaborate metrics in complex predictive scenarios and highlights the limitations of direct comparisons to a predefined database, which may include a limited number of chemical reaction pathways.
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Affiliation(s)
- Fernando Jaume-Santero
- Department of Radiology and Medical Informatics, University of Geneva, 1205 Geneva, Switzerland
- Geneva School of Business Administration, HES-SO University of Applied Sciences and Arts of Western Switzerland, 1227 Geneva, Switzerland
| | - Alban Bornet
- Department of Radiology and Medical Informatics, University of Geneva, 1205 Geneva, Switzerland
- Geneva School of Business Administration, HES-SO University of Applied Sciences and Arts of Western Switzerland, 1227 Geneva, Switzerland
| | | | - Nona Naderi
- Geneva School of Business Administration, HES-SO University of Applied Sciences and Arts of Western Switzerland, 1227 Geneva, Switzerland
- Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland
| | - David Vicente Alvarez
- Department of Radiology and Medical Informatics, University of Geneva, 1205 Geneva, Switzerland
- Geneva School of Business Administration, HES-SO University of Applied Sciences and Arts of Western Switzerland, 1227 Geneva, Switzerland
| | - Dimitrios Proios
- Department of Radiology and Medical Informatics, University of Geneva, 1205 Geneva, Switzerland
| | - Anthony Yazdani
- Department of Radiology and Medical Informatics, University of Geneva, 1205 Geneva, Switzerland
| | | | | | - Douglas Teodoro
- Department of Radiology and Medical Informatics, University of Geneva, 1205 Geneva, Switzerland
- Geneva School of Business Administration, HES-SO University of Applied Sciences and Arts of Western Switzerland, 1227 Geneva, Switzerland
- Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland
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