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For: Crook N, Alper HS. Model-based design of synthetic, biological systems. Chem Eng Sci 2013. [DOI: 10.1016/j.ces.2012.12.022] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Number Cited by Other Article(s)
1
Dixit S, Middelkoop TC, Choubey S. Governing principles of transcriptional logic out of equilibrium. Biophys J 2024;123:1015-1029. [PMID: 38486450 PMCID: PMC11052701 DOI: 10.1016/j.bpj.2024.03.020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2023] [Revised: 03/04/2024] [Accepted: 03/11/2024] [Indexed: 03/24/2024]  Open
2
A modular approach for modeling the cell cycle based on functional response curves. PLoS Comput Biol 2021;17:e1009008. [PMID: 34379640 PMCID: PMC8382204 DOI: 10.1371/journal.pcbi.1009008] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Revised: 08/23/2021] [Accepted: 07/19/2021] [Indexed: 12/02/2022]  Open
3
Yong C, Gyorgy A. Stability and Robustness of Unbalanced Genetic Toggle Switches in the Presence of Scarce Resources. Life (Basel) 2021;11:271. [PMID: 33805212 PMCID: PMC8064337 DOI: 10.3390/life11040271] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2021] [Revised: 03/17/2021] [Accepted: 03/19/2021] [Indexed: 12/24/2022]  Open
4
Soffer G, Perry JM, Shih SCC. Real-Time Optogenetics System for Controlling Gene Expression Using a Model-Based Design. Anal Chem 2021;93:3181-3188. [PMID: 33543619 DOI: 10.1021/acs.analchem.0c04594] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
5
Sun J, Alper H. Synthetic Biology: An Emerging Approach for Strain Engineering. Ind Biotechnol (New Rochelle N Y) 2016. [DOI: 10.1002/9783527807796.ch2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
6
Boada Y, Reynoso-Meza G, Picó J, Vignoni A. Multi-objective optimization framework to obtain model-based guidelines for tuning biological synthetic devices: an adaptive network case. BMC SYSTEMS BIOLOGY 2016;10:27. [PMID: 26968941 PMCID: PMC4788947 DOI: 10.1186/s12918-016-0269-0] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/13/2015] [Accepted: 02/16/2016] [Indexed: 12/22/2022]
7
Improvement of lactic acid production in Saccharomyces cerevisiae by a deletion of ssb1. J Ind Microbiol Biotechnol 2015;43:87-96. [PMID: 26660479 DOI: 10.1007/s10295-015-1713-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2015] [Accepted: 11/23/2015] [Indexed: 10/22/2022]
8
Jiang W, Luo J, Nangia S. Multiscale approach to investigate self-assembly of telodendrimer based nanocarriers for anticancer drug delivery. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2015;31:4270-4280. [PMID: 25532019 PMCID: PMC4760677 DOI: 10.1021/la503949b] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2014] [Revised: 12/21/2014] [Indexed: 05/29/2023]
9
Si T, Xiao H, Zhao H. Rapid prototyping of microbial cell factories via genome-scale engineering. Biotechnol Adv 2014;33:1420-32. [PMID: 25450192 DOI: 10.1016/j.biotechadv.2014.11.007] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2014] [Revised: 11/13/2014] [Accepted: 11/13/2014] [Indexed: 10/24/2022]
10
Advances and computational tools towards predictable design in biological engineering. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2014;2014:369681. [PMID: 25161694 PMCID: PMC4137594 DOI: 10.1155/2014/369681] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/03/2014] [Accepted: 06/09/2014] [Indexed: 11/21/2022]
11
Design of synthetic yeast promoters via tuning of nucleosome architecture. Nat Commun 2014;5:4002. [PMID: 24862902 PMCID: PMC4064463 DOI: 10.1038/ncomms5002] [Citation(s) in RCA: 107] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2013] [Accepted: 04/29/2014] [Indexed: 11/29/2022]  Open
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