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González-Valdez A, Vázquez-Bueno PG, Hernández-Pineda J, Soberón-Chávez G. Synthesis of di-rhamnolipids by the avirulent, mono-rhamnolipid producing strain Pseudomonas aeruginosa ATCC 9027. Biotechnol Lett 2024:10.1007/s10529-024-03527-7. [PMID: 39225887 DOI: 10.1007/s10529-024-03527-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Revised: 07/25/2024] [Accepted: 08/03/2024] [Indexed: 09/04/2024]
Abstract
To construct a derivative of the avirulent Pseudomonas aeruginosa ATCC 9027 that produces high levels of di-rhamnolipid, that has better physico-chemical characteristics for biotechnological applications than mono-rhamnolipid, which is the sole type produced by ATCC 9027. We used plasmids expressing the rhlC gene, which encodes for rhamnosyl transferase II that transforms mono- to di-rhamnolipids under different promoters and in combination with the gene coding for the RhlR quorum sensing regulator, or the mono-rhamnolipid biosynthetic rhlAB operon. The plasmids tested carrying the rhlC gene under the lac promoter were plasmid prhlC and prhlRC, while prhlAB-R-C expressed this gene from the rhlA promoter, forming part of the artificially constructed rhlAB-R-C operon. We measured rhamnolipds concentrations using the orcinol method and determined the proportion of mono-rhamnolipids and di-rhamnolipids by UPLC/MS/MS. We found that the expression of rhlC in P. aeruginosa ATCC 9027 caused the production of di-rhamnolipids and that the derivative carrying plasmid prhlAB-R-C gives the best results considering total rhamnolipids and a higher proportion of di-rhamnolipids. A P. aeruginosa ATCC 9027 derivative with increased di-rhamnolipids production was developed by expressing plasmid prhlAB-R-C, that produces similar rhamnolipids levels as PAO1 type-strain and presented a higher proportion of di-rhamnolipids than this type-strain.
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Affiliation(s)
- Abigail González-Valdez
- Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Apdo. Postal 70228, C. P. 04510, University City, CDMX, Mexico
| | - Paola G Vázquez-Bueno
- Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Apdo. Postal 70228, C. P. 04510, University City, CDMX, Mexico
| | - Jessica Hernández-Pineda
- Departamento de Infectología E Inmunología, Instituto Nacional de Perinatología, SSA, C. P. 11000, Mexico City, CDMX, Mexico
| | - Gloria Soberón-Chávez
- Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Apdo. Postal 70228, C. P. 04510, University City, CDMX, Mexico.
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Hosseini S, Sharifi R, Habibi A, Ali Q. Molecular identification of rhamnolipids produced by Pseudomonas oryzihabitans during biodegradation of crude oil. Front Microbiol 2024; 15:1459112. [PMID: 39234543 PMCID: PMC11372847 DOI: 10.3389/fmicb.2024.1459112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2024] [Accepted: 08/07/2024] [Indexed: 09/06/2024] Open
Abstract
Introduction The ability to produce biosurfactants plays a meaningful role in the bioavailability of crude oil hydrocarbons and the bioremediation efficiency of crude oil-degrading bacteria. This study aimed to characterize the produced biosurfactants by Pseudomonas oryzihabitans during the biodegradation of crude oil hydrocarbons. Methods The biosurfactants were isolated and then characterized by Fourier transform infrared (FTIR), liquid chromatography-mass-spectrometry (LC-MS), and nuclear magnetic resonance spectroscopy (NMR) analyses. Results The FTIR results revealed the existence of hydroxyl, carboxyl, and methoxyl groups in the isolated biosurfactants. Also, the LC-MS analysis demonstrated a main di-rhamnolipid (l-rhamnopyranosyll-rhamnopyranosyl-3-hydroxydecanoyl-3-hydroxydecanoate, Rha-Rha-C10-C10) along with a mono-rhamnolipid (l-rhamnopyranosyl-b-hydroxydecanoylb-hydroxydecanoate, Rha-C10-C10). In agreement with these findings, the NMR analysis confirmed the aromatic, carboxylic, methyl, sulfate moieties, and hexose sugar in the biosurfactants. The emulsion capacity of the biosurfactants decreased the surface tension of the aqueous system from 73.4 mN m-1 to around 33 mN m-1 at 200 mg L-1 as the critical micelle concentration. The emulsification capacity of the biosurfactants in the formation of a stable microemulsion for the diesel-water system at a wide range of pH (2-12), temperature (0-80°C), and salinity (2-20 g L-1 of NaCl) showed their potential use in oil recovery and bioremediation through the use of microbial enhancement. Discussion This work showed the ability of Pseudomonas oryzihabitans NC392 cells to produce rhamnolipid molecules during the biodegradation process of crude oil hydrocarbons. These biosurfactants have potential in bioremediation studies as eco-friendly and biodegradable products, and their stability makes them optimal for areas with extreme conditions.
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Affiliation(s)
- Saman Hosseini
- Department of Plant Protection, College of Agriculture and Natural Resources, Razi University, Kermanshah, Iran
| | - Rouhallah Sharifi
- Department of Plant Protection, College of Agriculture and Natural Resources, Razi University, Kermanshah, Iran
| | - Alireza Habibi
- Faculty of Petroleum and Chemical Engineering, Razi University, Kermanshah, Iran
| | - Qurban Ali
- Department of Biology, College of Science, United Arab Emirates University, Al-Ain, United Arab Emirates
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Vinayavekhin N, Wattanophas T, Murphy MF, Vangnai AS, Hobbs G. Metabolomics responses and tolerance of Pseudomonas aeruginosa under acoustic vibration stress. PLoS One 2024; 19:e0297030. [PMID: 38285708 PMCID: PMC10824448 DOI: 10.1371/journal.pone.0297030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Accepted: 12/25/2023] [Indexed: 01/31/2024] Open
Abstract
Sound has been shown to impact microbial behaviors. However, our understanding of the chemical and molecular mechanisms underlying these microbial responses to acoustic vibration is limited. In this study, we used untargeted metabolomics analysis to investigate the effects of 100-Hz acoustic vibration on the intra- and extracellular hydrophobic metabolites of P. aeruginosa PAO1. Our findings revealed increased levels of fatty acids and their derivatives, quinolones, and N-acylethanolamines upon sound exposure, while rhamnolipids (RLs) showed decreased levels. Further quantitative real-time polymerase chain reaction experiments showed slight downregulation of the rhlA gene (1.3-fold) and upregulation of fabY (1.5-fold), fadE (1.7-fold), and pqsA (1.4-fold) genes, which are associated with RL, fatty acid, and quinolone biosynthesis. However, no alterations in the genes related to the rpoS regulators or quorum-sensing networks were observed. Supplementing sodium oleate to P. aeruginosa cultures to simulate the effects of sound resulted in increased tolerance of P. aeruginosa in the presence of sound at 48 h, suggesting a potential novel response-tolerance correlation. In contrast, adding RL, which went against the response direction, did not affect its growth. Overall, these findings provide potential implications for the control and manipulation of virulence and bacterial characteristics for medical and industrial applications.
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Affiliation(s)
- Nawaporn Vinayavekhin
- Center of Excellence in Natural Products Chemistry, Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
- Center of Excellence in Biocatalyst and Sustainable Biotechnology, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
| | - Thanyaporn Wattanophas
- Center of Excellence in Natural Products Chemistry, Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
| | - Mark Francis Murphy
- School of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Liverpool, United Kingdom
| | - Alisa S. Vangnai
- Center of Excellence in Biocatalyst and Sustainable Biotechnology, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
- Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
| | - Glyn Hobbs
- School of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Liverpool, United Kingdom
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González‐Valdez A, Escalante A, Soberón‐Chávez G. Heterologous production of rhamnolipids in Pseudomonas chlororaphis subsp chlororaphis ATCC 9446 based on the endogenous production of N-acyl-homoserine lactones. Microb Biotechnol 2024; 17:e14377. [PMID: 38041625 PMCID: PMC10832566 DOI: 10.1111/1751-7915.14377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 11/08/2023] [Accepted: 11/10/2023] [Indexed: 12/03/2023] Open
Abstract
Rhamnolipids (RL) are biosurfactants naturally produced by the opportunistic pathogen Pseudomonas aeruginosa. Currently, RL are commercialized for various applications and produced by Pseudomonas putida due to the health risks associated with their large-scale production by P. aeruginosa. In this work, we show that RL containing one or two rhamnose moieties (mono-RL or di-RL, respectively) can be produced by the innocuous soil-bacterium Pseudomonas chlororaphis subsp chlororaphis ATCC 9446 at titres up to 66 mg/L (about 86% of the production of P. aeruginosa PAO1 in the same culture conditions). The production of RL depends on the expression of P. aeruginosa PAO1 genes encoding the enzymes RhlA, RhlB and RhlC. These genes were introduced in a plasmid, together with a transcriptional regulator (rhlR) forming part of the same operon, with and without RhlC. We show that the activation of rhlAB by RhlR depends on its interaction with P. chlororaphis endogenous acyl-homoserine lactones, which are synthetized by either PhzI or CsaI autoinducer synthases (producing 3-hydroxy-hexanoyl homoserine lactone, 3OH-C6-HSL, or 3-oxo-hexanoyl homoserine lactone, 3O-C6-HSL, respectively). P. chlororaphis transcriptional regulator couple with 3OH-C6-HSL is the primary activator of gene expression for phenazine-1-carboxylic acid (PCA) and phenazine-1-carboxamide (PCN) production in this soil bacterium. We show that RhlR coupled with 3OH-C6-HSL or 3O-C6-HSL promotes RL production and increases the production of PCA in P. chlororaphis. However, PhzR/3OH-C6-HSL or CsaR/3O-C6-HSL cannot activate the expression of the rhlAB operon to produce mono-RL. These results reveal a complex regulatory interaction between RhlR and P. chlororaphis quorum-sensing signals and highlight the biotechnology potential of P. chlororaphis ATCC 9446 expressing P. aeruginosa rhlAB-R or rhlAB-R-C for the industrial production of RL.
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Affiliation(s)
- Abigail González‐Valdez
- Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones BiomédicasUniversidad Nacional Autónoma de MéxicoCoyoacanMexico
| | - Adelfo Escalante
- Departamento de Ingeniería Celular y Biocatálisis, Instituto de BiotecnologíaUniversidad Nacional Autónoma de MéxicoCuernavacaMexico
| | - Gloria Soberón‐Chávez
- Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones BiomédicasUniversidad Nacional Autónoma de MéxicoCoyoacanMexico
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Chen J, Yu X, Lu X, Wang W, Pan J, Yin Q, Wei B, Zhang H, Wang H. Biosynthesis and Gene Regulation of Rhamnolipid Congeners. Curr Microbiol 2023; 80:302. [PMID: 37493824 DOI: 10.1007/s00284-023-03405-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2023] [Accepted: 07/05/2023] [Indexed: 07/27/2023]
Abstract
Rhamnolipid congeners have been widely used in agriculture and biomedicine as potent surfactants. They have recently attracted attention due to their diverse and versatile biological functions, which include an important bacterial virulence factor that makes them attractive targets for research into biosynthetic pathways and gene regulation. The intricate gene expression and regulation network controlling their biosynthesis remain to be completely understood. This article summarizes current knowledge about the biosynthesis pathways and regulatory mechanisms of rhamnolipid congeners, that meet the pharmacological needs of human health and agriculture.
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Affiliation(s)
- Jianwei Chen
- College of Pharmaceutical Science & Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals & Key Laboratory for Green Pharmaceutical Technologies and Related Equipment of Ministry of Education & Key Laboratory, Pharmaceutical Engineering of Zhejiang Province, Zhejiang University of Technology, Hangzhou, China.
| | - Xiaoya Yu
- College of Pharmaceutical Science & Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals & Key Laboratory for Green Pharmaceutical Technologies and Related Equipment of Ministry of Education & Key Laboratory, Pharmaceutical Engineering of Zhejiang Province, Zhejiang University of Technology, Hangzhou, China
| | - Xingyue Lu
- College of Pharmaceutical Science & Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals & Key Laboratory for Green Pharmaceutical Technologies and Related Equipment of Ministry of Education & Key Laboratory, Pharmaceutical Engineering of Zhejiang Province, Zhejiang University of Technology, Hangzhou, China
| | - Wei Wang
- College of Pharmaceutical Science & Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals & Key Laboratory for Green Pharmaceutical Technologies and Related Equipment of Ministry of Education & Key Laboratory, Pharmaceutical Engineering of Zhejiang Province, Zhejiang University of Technology, Hangzhou, China
| | - Jiangwei Pan
- College of Pharmaceutical Science & Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals & Key Laboratory for Green Pharmaceutical Technologies and Related Equipment of Ministry of Education & Key Laboratory, Pharmaceutical Engineering of Zhejiang Province, Zhejiang University of Technology, Hangzhou, China
| | - Qunjian Yin
- Laboratory of Tropical Marine Ecosystem and Bioresource, Fourth Institute of Oceanography, Ministry of Natural Resources, Beihai, China
| | - Bin Wei
- College of Pharmaceutical Science & Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals & Key Laboratory for Green Pharmaceutical Technologies and Related Equipment of Ministry of Education & Key Laboratory, Pharmaceutical Engineering of Zhejiang Province, Zhejiang University of Technology, Hangzhou, China
| | - Huawei Zhang
- College of Pharmaceutical Science & Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals & Key Laboratory for Green Pharmaceutical Technologies and Related Equipment of Ministry of Education & Key Laboratory, Pharmaceutical Engineering of Zhejiang Province, Zhejiang University of Technology, Hangzhou, China
| | - Hong Wang
- College of Pharmaceutical Science & Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals & Key Laboratory for Green Pharmaceutical Technologies and Related Equipment of Ministry of Education & Key Laboratory, Pharmaceutical Engineering of Zhejiang Province, Zhejiang University of Technology, Hangzhou, China.
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Liu S, Liu W, Yin H, Yang C, Chen J. Improving rhamnolipids production using fermentation-foam fractionation coupling system: cell immobilization and waste frying oil emulsion. Bioprocess Biosyst Eng 2023:10.1007/s00449-023-02890-5. [PMID: 37338581 DOI: 10.1007/s00449-023-02890-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Accepted: 05/30/2023] [Indexed: 06/21/2023]
Abstract
This work focused on the development of an inexpensive carbon source and the improvement of the fermentation-foam fractionation coupling system. The rhamnolipids production capacity of waste frying oil (WFO) was evaluated. The suitable bacterial cultivation of seed liquid and the addition amount of WFO was 16 h and 2% (v/v), respectively. A combined strategy of cell immobilization and oil emulsion avoid cell entrainment inside foam and improves the oil mass transfer rate. The immobilization conditions of bacterial cells into alginate-chitosan-alginate (ACA) microcapsules were optimized using the response surface method (RSM). Under the optimal conditions, rhamnolipids production using batch fermentation with immobilized strain reached 7.18 ± 0.23% g/L. WFO was emulsified into a fermentation medium using rhamnolipids as emulsifier (0.5 g/L). By monitoring dissolved oxygen, 30 mL/min was selected as a suitable air volumetric flow rate for fermentation-foam fractionation coupling operation. The total production and recovery percentage of rhamnolipids were 11.29 ± 0.36 g/L and 95.62 ± 0.38%, respectively.
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Affiliation(s)
- Siyuan Liu
- School of Chemical Engineering and Technology, Hebei University of Technology, No.8 Guangrong Road, DingziGu, Hongqiao District, Tianjin, 300130, China
| | - Wei Liu
- School of Chemical Engineering and Technology, Hebei University of Technology, No.8 Guangrong Road, DingziGu, Hongqiao District, Tianjin, 300130, China.
| | - Hao Yin
- School of Chemical Engineering and Technology, Hebei University of Technology, No.8 Guangrong Road, DingziGu, Hongqiao District, Tianjin, 300130, China
| | - Chunyan Yang
- School of Chemical Engineering and Technology, Hebei University of Technology, No.8 Guangrong Road, DingziGu, Hongqiao District, Tianjin, 300130, China
| | - Jianxin Chen
- School of Chemical Engineering and Technology, Hebei University of Technology, No.8 Guangrong Road, DingziGu, Hongqiao District, Tianjin, 300130, China
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7
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Gaur S, Gupta S, Jain A. Production, characterization, and kinetic modeling of biosurfactant synthesis by Pseudomonas aeruginosa gi |KP 163922|: a mechanism perspective. World J Microbiol Biotechnol 2023; 39:178. [PMID: 37129646 DOI: 10.1007/s11274-023-03623-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2022] [Accepted: 04/17/2023] [Indexed: 05/03/2023]
Abstract
Kinetic studies and modeling of production parameters are essential for developing economical biosurfactant production processes. This study will provide a perspective on mechanistic reaction pathways to metabolize Waste Engine Oil (WEO). The results will provide relevant information on (i) WEO concentration above which growth inhibition occurs, (ii) chemical changes in WEO during biodegradation, and (iii) understanding of growth kinetics for the strain utilizing complex substrates. Laboratory scale experiments were conducted to study the kinetics and biodegradation potential of the strain Pseudomonas aeruginosa gi |KP 163922| over a range (0.5-8% (v/v)) of initial WEO concentration for 168 h. The kinetic models, such as Monod, Powell, Edward, Luong, and Haldane, were evaluated by fitting the experimental results in respective model equations. An unprecedented characterization of the substrate before and after degradation is presented, along with biosurfactant characterization. The secretion of biosurfactant during the growth, validated by surface tension reduction (72.07 ± 1.14 to 29.32 ± 1.08 mN/m), facilitated the biodegradation of WEO to less harmful components. The strain showed an increase in maximum specific growth rate (µmax) from 0.0185 to 0.1415 h-1 upto 49.92 mg/L WEO concentration. Maximum WEO degradation was found to be ~ 94% gravimetrically. The Luong model (adj. R2 = 0.97) adapted the experimental data using a non-linear regression method. Biochemical, 1H NMR, and FTIR analysis of the produced biosurfactant revealed a mixture of mono- and di- rhamnolipid. The degradation compounds in WEO were identified using FTIR, 1H NMR, and GC-MS analysis to deduce the mechanism.
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Affiliation(s)
- Shailee Gaur
- Department of Chemical Engineering, Birla Institute of Technology and Science, Pilani, Pilani Campus, Pilani, Rajasthan, 333031, India
| | - Suresh Gupta
- Department of Chemical Engineering, Birla Institute of Technology and Science, Pilani, Pilani Campus, Pilani, Rajasthan, 333031, India
| | - Amit Jain
- Department of Chemical Engineering, Birla Institute of Technology and Science, Pilani, Pilani Campus, Pilani, Rajasthan, 333031, India.
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8
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Kumar R, Barbhuiya RI, Bohra V, Wong JWC, Singh A, Kaur G. Sustainable rhamnolipids production in the next decade - Advancing with Burkholderia thailandensis as a potent biocatalytic strain. Microbiol Res 2023; 272:127386. [PMID: 37094547 DOI: 10.1016/j.micres.2023.127386] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2022] [Revised: 03/27/2023] [Accepted: 04/10/2023] [Indexed: 04/26/2023]
Abstract
Rhamnolipids are one of the most promising eco-friendly green glycolipids for bio-replacements of commercially available fossil fuel-based surfactants. However, the current industrial biotechnology practices cannot meet the required standards due to the low production yields, expensive biomass feedstocks, complicated processing, and opportunistic pathogenic nature of the conventional rhamnolipid producer strains. To overcome these problems, it has become important to realize non-pathogenic producer substitutes and high-yielding strategies supporting biomass-based production. We hereby review the inherent characteristics of Burkholderia thailandensis E264 which favor its competence towards such sustainable rhamnolipid biosynthesis. The underlying biosynthetic networks of this species have unveiled unique substrate specificity, carbon flux control and rhamnolipid congener profile. Acknowledging such desirable traits, the present review provides critical insights towards metabolism, regulation, upscaling, and applications of B. thailandensis rhamnolipids. Identification of their unique and naturally inducible physiology has proved to be beneficial for achieving previously unmet redox balance and metabolic flux requirements in rhamnolipids production. These developments in part are targeted by the strategic optimization of B. thailandensis valorizing low-cost substrates ranging from agro-industrial byproducts to next generation (waste) fractions. Accordingly, safer bioconversions can propel the industrial rhamnolipids in advanced biorefinery domains to promote circular economy, reduce carbon footprint and increased applicability as both social and environment friendly bioproducts.
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Affiliation(s)
- Rajat Kumar
- Department of Biology, Hong Kong Baptist University, Kowloon Tong, Hong Kong
| | | | - Varsha Bohra
- Department of Biology, Hong Kong Baptist University, Kowloon Tong, Hong Kong
| | - Jonathan W C Wong
- Department of Biology, Hong Kong Baptist University, Kowloon Tong, Hong Kong; Institute of Bioresources and Agriculture and Sino-Forest Applied Research Centre for Pearl River Delta Environment, Hong Kong Baptist University, Kowloon Tong, Hong Kong
| | - Ashutosh Singh
- School of Engineering, University of Guelph, Guelph, ON N1G2W1, Canada
| | - Guneet Kaur
- School of Engineering, University of Guelph, Guelph, ON N1G2W1, Canada.
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9
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Rhamnolipid Self-Aggregation in Aqueous Media: A Long Journey toward the Definition of Structure–Property Relationships. Int J Mol Sci 2023; 24:ijms24065395. [PMID: 36982468 PMCID: PMC10048978 DOI: 10.3390/ijms24065395] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Revised: 03/06/2023] [Accepted: 03/07/2023] [Indexed: 03/16/2023] Open
Abstract
The need to protect human and environmental health and avoid the widespread use of substances obtained from nonrenewable sources is steering research toward the discovery and development of new molecules characterized by high biocompatibility and biodegradability. Due to their very widespread use, a class of substances for which this need is particularly urgent is that of surfactants. In this respect, an attractive and promising alternative to commonly used synthetic surfactants is represented by so-called biosurfactants, amphiphiles naturally derived from microorganisms. One of the best-known families of biosurfactants is that of rhamnolipids, which are glycolipids with a headgroup formed by one or two rhamnose units. Great scientific and technological effort has been devoted to optimization of their production processes, as well as their physicochemical characterization. However, a conclusive structure–function relationship is far from being defined. In this review, we aim to move a step forward in this direction, by presenting a comprehensive and unified discussion of physicochemical properties of rhamnolipids as a function of solution conditions and rhamnolipid structure. We also discuss still unresolved issues that deserve further investigation in the future, to allow the replacement of conventional surfactants with rhamnolipids.
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10
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β-oxidation-polyhydroxyalkanoates synthesis relationship in Pseudomonas putida KT2440 revisited. Appl Microbiol Biotechnol 2023; 107:1863-1874. [PMID: 36763117 PMCID: PMC10006253 DOI: 10.1007/s00253-023-12413-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 01/20/2023] [Accepted: 01/25/2023] [Indexed: 02/11/2023]
Abstract
Pseudomonas putida KT2440 is a well-known model organism for the medium-chain-length (mcl) polyhydroxyalkanoate (PHA) accumulation. (R)-Specific enoyl-coenzyme A hydratase (PhaJ) was considered to be the main supplier of monomers for PHA synthesis by converting the β-oxidation intermediate, trans-2-enoyl-CoA to (R)-3-hydroxyacyl-CoA when fatty acids (FA) are used. Three PhaJ homologues, PhaJ1, PhaJ4 and MaoC, are annotated in P. putida KT2440. To investigate the relationship of fatty acids-PHA metabolism and the role of each PhaJ in PHA biosynthesis in P. putida KT2440, a series of P. putida KT2440 knockouts was obtained. PHA content and monomer composition in wild type (WT) and mutants under different growth conditions were analysed. PhaJ4 was the main monomer supplier for PHA synthesis with FA as sole carbon and energy source, with preference towards C8 and C10 substrate, whereas PhaJ1 showed preference for the C6 substrate. However, when all three PhaJ homologues were deleted, the mutant still accumulated PHA up to 10.7% of the cell dry weight (CDW). The deletion of (R)-3-hydroxydecanoyl-ACP:CoA transacylase (PhaG), which connects de novo FA and PHA synthesis pathways, while causing a further 1.8-fold decrease in PHA content, did not abolish PHA accumulation. Further proteome analysis revealed quinoprotein alcohol dehydrogenases PedE and PedH as potential monomer suppliers, but when these were deleted, the PHA level remained at 2.2-14.8% CDW depending on the fatty acid used and whether nitrogen limitation was applied. Therefore, it is likely that some other non-specific dehydrogenases supply monomers for PHA synthesis, demonstrating the redundancy of PHA metabolism. KEY POINTS: • β-oxidation intermediates are converted to PHA monomers by hydratases PhaJ1, PhaJ4 and MaoC in Pseudomonas putida KT2440. • When these are deleted, the PHA level decreases, but it is not abolished. • PHA non-specific enzyme(s) also contributes to PHA metabolism in KT2440.
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Santamaria G, Liao C, Lindberg C, Chen Y, Wang Z, Rhee K, Pinto FR, Yan J, Xavier JB. Evolution and regulation of microbial secondary metabolism. eLife 2022; 11:e76119. [PMID: 36409069 PMCID: PMC9708071 DOI: 10.7554/elife.76119] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2021] [Accepted: 11/18/2022] [Indexed: 11/23/2022] Open
Abstract
Microbes have disproportionate impacts on the macroscopic world. This is in part due to their ability to grow to large populations that collectively secrete massive amounts of secondary metabolites and alter their environment. Yet, the conditions favoring secondary metabolism despite the potential costs for primary metabolism remain unclear. Here we investigated the biosurfactants that the bacterium Pseudomonas aeruginosa makes and secretes to decrease the surface tension of surrounding liquid. Using a combination of genomics, metabolomics, transcriptomics, and mathematical modeling we show that the ability to make surfactants from glycerol varies inconsistently across the phylogenetic tree; instead, lineages that lost this ability are also worse at reducing the oxidative stress of primary metabolism on glycerol. Experiments with different carbon sources support a link with oxidative stress that explains the inconsistent distribution across the P. aeruginosa phylogeny and suggests a general principle: P. aeruginosa lineages produce surfactants if they can reduce the oxidative stress produced by primary metabolism and have excess resources, beyond their primary needs, to afford secondary metabolism. These results add a new layer to the regulation of a secondary metabolite unessential for primary metabolism but important to change physical properties of the environments surrounding bacterial populations.
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Affiliation(s)
- Guillem Santamaria
- Program for Computational and Systems Biology, Memorial Sloan Kettering Cancer CenterNew YorkUnited States
- BioISI – Biosystems & Integrative Sciences Institute, Faculty of Sciences, University of LisboaLisboaPortugal
| | - Chen Liao
- Program for Computational and Systems Biology, Memorial Sloan Kettering Cancer CenterNew YorkUnited States
| | - Chloe Lindberg
- Program for Computational and Systems Biology, Memorial Sloan Kettering Cancer CenterNew YorkUnited States
| | - Yanyan Chen
- Program for Computational and Systems Biology, Memorial Sloan Kettering Cancer CenterNew YorkUnited States
| | - Zhe Wang
- Department of Medicine, Weill Cornell Medical CollegeNew YorkUnited States
| | - Kyu Rhee
- Department of Medicine, Weill Cornell Medical CollegeNew YorkUnited States
| | - Francisco Rodrigues Pinto
- BioISI – Biosystems & Integrative Sciences Institute, Faculty of Sciences, University of LisboaLisboaPortugal
| | - Jinyuan Yan
- Program for Computational and Systems Biology, Memorial Sloan Kettering Cancer CenterNew YorkUnited States
| | - Joao B Xavier
- Program for Computational and Systems Biology, Memorial Sloan Kettering Cancer CenterNew YorkUnited States
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12
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Pseudomonas aeruginosa biofilm dispersion by the mouse antimicrobial peptide CRAMP. Vet Res 2022; 53:80. [PMID: 36209206 PMCID: PMC9548163 DOI: 10.1186/s13567-022-01097-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2022] [Accepted: 08/15/2022] [Indexed: 11/10/2022] Open
Abstract
Pseudomonas aeruginosa (P. aeruginosa) is a known bacterium that produces biofilms and causes severe infection. Furthermore, P. aeruginosa biofilms are extremely difficult to eradicate, leading to the development of chronic and antibiotic-resistant infections. Our previous study showed that a cathelicidin-related antimicrobial peptide (CRAMP) inhibits the formation of P. aeruginosa biofilms and markedly reduces the biomass of preformed biofilms, while the mechanism of eradicating bacterial biofilms remains elusive. Therefore, in this study, the potential mechanism by which CRAMP eradicates P. aeruginosa biofilms was investigated through an integrative analysis of transcriptomic, proteomic, and metabolomic data. The omics data revealed CRAMP functioned against P. aeruginosa biofilms by different pathways, including the Pseudomonas quinolone signal (PQS) system, cyclic dimeric guanosine monophosphate (c-di-GMP) signalling pathway, and synthesis pathways of exopolysaccharides and rhamnolipid. Moreover, a total of 2914 differential transcripts, 785 differential proteins, and 280 differential metabolites were identified. A series of phenotypic validation tests demonstrated that CRAMP reduced the c-di-GMP level with a decrease in exopolysaccharides, especially alginate, in P. aeruginosa PAO1 biofilm cells, improved bacterial flagellar motility, and increased the rhamnolipid content, contributing to the dispersion of biofilms. Our study provides new insight into the development of CRAMP as a potentially effective antibiofilm dispersant.
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13
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Rana AK, Thakur MK, Saini AK, Mokhta SK, Moradi O, Rydzkowski T, Alsanie WF, Wang Q, Grammatikos S, Thakur VK. Recent developments in microbial degradation of polypropylene: Integrated approaches towards a sustainable environment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 826:154056. [PMID: 35231525 DOI: 10.1016/j.scitotenv.2022.154056] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Revised: 02/15/2022] [Accepted: 02/17/2022] [Indexed: 06/14/2023]
Abstract
Fossil-fuel-based plastics have many enticing properties, but their production has resulted in significant environmental issues that require immediate attention. Despite the fact that these polymers are manmade, some bacteria can degrade and metabolise them, suggesting that biotechnologies based on the principle of plastic biodegradation could be beneficial. Among different types of plastics, polypropylene (PP), either having low or high density, is one of the most consumed plastics (18.85%). Their debasement under natural conditions is somewhat tricky. Still, their debasement under natural conditions is rather difficult slightly. However, different scientists have still made efforts by employing other microbes such as bacteria, fungi, and guts bacteria of larvae of insects to bio-deteriorate the PP plastic. Pre-irradiation techniques (ultraviolet and gamma irradiations), compatibilizers, and bio-additives (natural fibers, starch, and polylactic acid) have been found to impact percent bio-deterioration of different PP derivatives stronglythe various. The fungal and bacterial study showed that PP macro/microplastic might serve as an energy source and sole carbon during bio-degradation. Generally, gravimetric method or physical characterization techniques such as FTIR, XRD, SEM, etc., are utilized to affirm the bio-degradation of PP plastics-based materials. However, these techniques are not enough to warrant the bio-deterioration of PP. In this regard, a new technique approach that measures the amount of carbon dioxide emitted during bacterial or fungus degradation has also been discussed. In addition, further exploration is needed on novel isolates from plastisphere environments, sub-atomic strategies to describe plastic-debasing microorganisms and improve enzymatic action strategies, and omics-based innovations to speed up plastic waste bio-deterioration.
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Affiliation(s)
| | - Manju Kumari Thakur
- Department of Chemistry, Govt. Degree College Sarkaghat, Himachal Pradesh University, Shimla 171005, India
| | - Adesh Kumar Saini
- Department of Biotechnology, MMEC, Maharishi Markandeshwar (Deemed to be University), Mullana, Ambala, Haryana 133207, India.
| | - Sudesh Kumar Mokhta
- Department of Environment, Science & Technology, Government of Himachal Pradesh, 171001, India
| | - Omid Moradi
- Faculty of Science, Shahr-e-Qods Branch, Islamic Azad University, Tehran, Iran.
| | - Tomasz Rydzkowski
- Department of Mechanical Engineering, Koszalin University of Technology, Raclawicka Str. 15-17, 75-620 Koszalin, Poland.
| | - Walaa F Alsanie
- Department of Clinical Laboratories Sciences, The Faculty of Applied Medical Sciences, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia.
| | - Qilin Wang
- Centre for Technology in Water and Wastewater, School of Civil and Environmental Engineering, University of Technology Sydney, Ultimo, NSW 2007, Australia.
| | - Sotirios Grammatikos
- Laboratory of Advanced & Sustainable Engineering Materials (ASEMlab), Group of Sustainable Composites, Department of Manufacturing and Civil Engineering, Norwegian University of Science and Technology, Gjøvik 2815, Norway
| | - Vijay Kumar Thakur
- Biorefining and Advanced Materials Research Center, SRUC, Edinburgh, UK; School of Engineering, University of Petroleum & Energy Studies (UPES), Dehradun 248007, India.
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14
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Blunt W, Blanchard C, Morley K. Effects of environmental parameters on microbial rhamnolipid biosynthesis and bioreactor strategies for enhanced productivity. Biochem Eng J 2022. [DOI: 10.1016/j.bej.2022.108436] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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15
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Identification of putative producers of rhamnolipids/glycolipids and their transporters using genome mining. CURRENT RESEARCH IN BIOTECHNOLOGY 2022. [DOI: 10.1016/j.crbiot.2022.02.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
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16
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Overview on Glycosylated Lipids Produced by Bacteria and Fungi: Rhamno-, Sophoro-, Mannosylerythritol and Cellobiose Lipids. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2022; 181:73-122. [DOI: 10.1007/10_2021_200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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17
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Awasthi D, Tang YH, Amer B, Baidoo EEK, Gin J, Chen Y, Petzold CJ, Kalyuzhnaya M, Singer SW. OUP accepted manuscript. J Ind Microbiol Biotechnol 2022; 49:6521446. [PMID: 35134957 PMCID: PMC9118986 DOI: 10.1093/jimb/kuac002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Accepted: 01/19/2022] [Indexed: 11/15/2022]
Abstract
Rhamnolipids (RLs) are well-studied biosurfactants naturally produced by pathogenic strains of Pseudomonas aeruginosa. Current methods to produce RLs in native and heterologous hosts have focused on carbohydrates as production substrate; however, methane (CH4) provides an intriguing alternative as a substrate for RL production because it is low cost and may mitigate greenhouse gas emissions. Here, we demonstrate RL production from CH4 by Methylotuvimicrobium alcaliphilum DSM19304. RLs are inhibitory to M. alcaliphilum growth (<0.05 g/l). Adaptive laboratory evolution was performed by growing M. alcaliphilum in increasing concentrations of RLs, producing a strain that grew in the presence of 5 g/l of RLs. Metabolomics and proteomics of the adapted strain grown on CH4 in the absence of RLs revealed metabolic changes, increase in fatty acid production and secretion, alterations in gluconeogenesis, and increased secretion of lactate and osmolyte products compared with the parent strain. Expression of plasmid-borne RL production genes in the parent M. alcaliphilum strain resulted in cessation of growth and cell death. In contrast, the adapted strain transformed with the RL production genes showed no growth inhibition and produced up to 1 μM of RLs, a 600-fold increase compared with the parent strain, solely from CH4. This work has promise for developing technologies to produce fatty acid-derived bioproducts, including biosurfactants, from CH4.
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Affiliation(s)
- Deepika Awasthi
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Yung-Hsu Tang
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Bashar Amer
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Edward E K Baidoo
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Jennifer Gin
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Yan Chen
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Christopher J Petzold
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Marina Kalyuzhnaya
- Department of Biology, San Diego State University, San Diego, CA 92182, USA
| | - Steven W Singer
- Correspondence should be addressed to: Steven W. Singer. Tel: 510-486-5556; Fax: 510-486-4252; E-mail:
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18
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Qi X, Yan W, Cao Z, Ding M, Yuan Y. Current Advances in the Biodegradation and Bioconversion of Polyethylene Terephthalate. Microorganisms 2021; 10:39. [PMID: 35056486 PMCID: PMC8779501 DOI: 10.3390/microorganisms10010039] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Revised: 12/15/2021] [Accepted: 12/20/2021] [Indexed: 01/04/2023] Open
Abstract
Polyethylene terephthalate (PET) is a widely used plastic that is polymerized by terephthalic acid (TPA) and ethylene glycol (EG). In recent years, PET biodegradation and bioconversion have become important in solving environmental plastic pollution. More and more PET hydrolases have been discovered and modified, which mainly act on and degrade the ester bond of PET. The monomers, TPA and EG, can be further utilized by microorganisms, entering the tricarboxylic acid cycle (TCA cycle) or being converted into high value chemicals, and finally realizing the biodegradation and bioconversion of PET. Based on synthetic biology and metabolic engineering strategies, this review summarizes the current advances in the modified PET hydrolases, engineered microbial chassis in degrading PET, bioconversion pathways of PET monomers, and artificial microbial consortia in PET biodegradation and bioconversion. Artificial microbial consortium provides novel ideas for the biodegradation and bioconversion of PET or other complex polymers. It is helpful to realize the one-step bioconversion of PET into high value chemicals.
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Affiliation(s)
- Xinhua Qi
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China; (X.Q.); (W.Y.); (Z.C.); (Y.Y.)
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin University, Tianjin 300072, China
| | - Wenlong Yan
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China; (X.Q.); (W.Y.); (Z.C.); (Y.Y.)
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin University, Tianjin 300072, China
| | - Zhibei Cao
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China; (X.Q.); (W.Y.); (Z.C.); (Y.Y.)
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin University, Tianjin 300072, China
| | - Mingzhu Ding
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China; (X.Q.); (W.Y.); (Z.C.); (Y.Y.)
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin University, Tianjin 300072, China
| | - Yingjin Yuan
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China; (X.Q.); (W.Y.); (Z.C.); (Y.Y.)
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin University, Tianjin 300072, China
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19
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de Oliveira RD, Novello V, da Silva LF, Gomez JGC, Le Roux GAC. Glucose metabolism in Pseudomonas aeruginosa is cyclic when producing Polyhydroxyalkanoates and Rhamnolipids. J Biotechnol 2021; 342:54-63. [PMID: 34687809 DOI: 10.1016/j.jbiotec.2021.10.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2021] [Revised: 10/11/2021] [Accepted: 10/14/2021] [Indexed: 10/20/2022]
Abstract
Pseudomonas aeruginosa is an important chassis for production of polyhydroxyalkanoates (PHA) and rhamnolipids (RHL). Advances in the understanding of the biosynthesis metabolism of these biocompounds are crucial for increasing yield. 13C-Metabolic Flux Ratio Analysis (13C-MFA) is a technique to estimate in vivo metabolic fluxes ratios. PHA and RHL are essentially non-growth associated products of biotechnological interest and both contain hydroxyalkanoates (HAs), whose labeling patterns could be accessed by GC-MS. In this study, to reveal the relative contributions of the Entner-Doudoroff (ED) pathway and the non-oxidative Pentose Phosphate (PP) pathway to PHA and RHL production, 13C-MFA was performed in Pseudomonas aeruginosa LFM634 when supplied with labeled glucose. This bacterial strain lacks both functional EMP and the oxidative PP branch. Labeling patterns in HAs were measured. Experiments with [U-13C] glucose indicated a low flux though PP pathway. An optimal design of labeling experiment showed that [6-13C] glucose would be the best substrate to enable an estimation of the ED flux with high accuracy. Results of experiments performed with this isotope indicated that about two-thirds of glyceraldehyde 3-phosphate is recycled through a cyclic ED architecture, suggesting that P. aeruginosa utilizes that cycle to regulate the NADPH/Acetyl-CoA ratio for PHA and RHL biosynthesis.
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Affiliation(s)
| | - Vânia Novello
- Department of Microbiology, Institute of Biomedical Sciences, University of São Paulo, Brazil
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20
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Qin ZH, Mou JH, Chao CYH, Chopra SS, Daoud W, Leu SY, Ning Z, Tso CY, Chan CK, Tang S, Hathi ZJ, Haque MA, Wang X, Lin CSK. Biotechnology of Plastic Waste Degradation, Recycling, and Valorization: Current Advances and Future Perspectives. CHEMSUSCHEM 2021; 14:4103-4114. [PMID: 34137191 DOI: 10.1002/cssc.202100752] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Revised: 06/12/2021] [Indexed: 06/12/2023]
Abstract
Although fossil-based plastic products have many attractive characteristics, their production has led to severe environmental burdens that require immediate solutions. Despite these plastics being non-natural chemical compounds, they can be degraded and metabolized by some microorganisms, which suggests the potential application of biotechnologies based on the mechanism of plastic biodegradation. In this context, microbe-based strategies for the degradation, recycling, and valorization of plastic waste offer a feasible approach for alleviating environmental challenges created by the accumulation of plastic waste. This Minireview highlights recent advances in the biotechnology-based biodegradation of both traditional polymers and bio-based plastics, focusing on the mechanisms of biodegradation. From an application perspective, this Minireview also summarizes recent progress in the recycling and valorization of plastic waste, which are feasible solutions for tackling the plastic waste dilemma.
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Affiliation(s)
- Zi-Hao Qin
- School of Energy and Environment, City University of Hong Kong, Hong Kong
| | - Jin-Hua Mou
- School of Energy and Environment, City University of Hong Kong, Hong Kong
| | | | | | - Walid Daoud
- School of Energy and Environment, City University of Hong Kong, Hong Kong
| | - Shao-Yuan Leu
- Department of Civil and Environmental Engineering, The Hong Kong Polytechnic University, Hong Kong
| | - Zhi Ning
- Division of Environment and Sustainability, Hong Kong University of Science and Technology, Hong Kong
| | - Chi Yan Tso
- School of Energy and Environment, City University of Hong Kong, Hong Kong
| | - Chak Keung Chan
- School of Energy and Environment, City University of Hong Kong, Hong Kong
| | - Shixing Tang
- Department of Epidemiology, School of Public Health, Southern Medical University, Guangzhou, 510632, P. R. China
| | | | - Md Ariful Haque
- School of Energy and Environment, City University of Hong Kong, Hong Kong
| | - Xiang Wang
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institutes, College of Life Science and Technology, Jinan University, Guangzhou, 510632, P. R. China
| | - Carol Sze Ki Lin
- School of Energy and Environment, City University of Hong Kong, Hong Kong
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21
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Schellenberger R, Crouzet J, Nickzad A, Shu LJ, Kutschera A, Gerster T, Borie N, Dawid C, Cloutier M, Villaume S, Dhondt-Cordelier S, Hubert J, Cordelier S, Mazeyrat-Gourbeyre F, Schmid C, Ongena M, Renault JH, Haudrechy A, Hofmann T, Baillieul F, Clément C, Zipfel C, Gauthier C, Déziel E, Ranf S, Dorey S. Bacterial rhamnolipids and their 3-hydroxyalkanoate precursors activate Arabidopsis innate immunity through two independent mechanisms. Proc Natl Acad Sci U S A 2021; 118:e2101366118. [PMID: 34561304 PMCID: PMC8488661 DOI: 10.1073/pnas.2101366118] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/10/2021] [Indexed: 11/18/2022] Open
Abstract
Plant innate immunity is activated upon perception of invasion pattern molecules by plant cell-surface immune receptors. Several bacteria of the genera Pseudomonas and Burkholderia produce rhamnolipids (RLs) from l-rhamnose and (R)-3-hydroxyalkanoate precursors (HAAs). RL and HAA secretion is required to modulate bacterial surface motility, biofilm development, and thus successful colonization of hosts. Here, we show that the lipidic secretome from the opportunistic pathogen Pseudomonas aeruginosa, mainly comprising RLs and HAAs, stimulates Arabidopsis immunity. We demonstrate that HAAs are sensed by the bulb-type lectin receptor kinase LIPOOLIGOSACCHARIDE-SPECIFIC REDUCED ELICITATION/S-DOMAIN-1-29 (LORE/SD1-29), which also mediates medium-chain 3-hydroxy fatty acid (mc-3-OH-FA) perception, in the plant Arabidopsis thaliana HAA sensing induces canonical immune signaling and local resistance to plant pathogenic Pseudomonas infection. By contrast, RLs trigger an atypical immune response and resistance to Pseudomonas infection independent of LORE. Thus, the glycosyl moieties of RLs, although abolishing sensing by LORE, do not impair their ability to trigger plant defense. Moreover, our results show that the immune response triggered by RLs is affected by the sphingolipid composition of the plasma membrane. In conclusion, RLs and their precursors released by bacteria can both be perceived by plants but through distinct mechanisms.
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Affiliation(s)
- Romain Schellenberger
- Université de Reims Champagne-Ardenne, Unité de Recherche Résistance Induite et Bioprotection des Plantes, Unité d'accueil 4707, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Unité sous contrat 1488, Structure Fédérative de Recherche Condorcet, CNRS, Fédération de Recherche 3417, 51687 Reims, France
| | - Jérôme Crouzet
- Université de Reims Champagne-Ardenne, Unité de Recherche Résistance Induite et Bioprotection des Plantes, Unité d'accueil 4707, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Unité sous contrat 1488, Structure Fédérative de Recherche Condorcet, CNRS, Fédération de Recherche 3417, 51687 Reims, France
| | - Arvin Nickzad
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique, Laval, QC H7V 1B7, Canada
| | - Lin-Jie Shu
- Phytopathology, School of Life Sciences Weihenstephan, Technical University of Munich, Freising-Weihenstephan 85354, Germany
| | - Alexander Kutschera
- Phytopathology, School of Life Sciences Weihenstephan, Technical University of Munich, Freising-Weihenstephan 85354, Germany
| | - Tim Gerster
- Phytopathology, School of Life Sciences Weihenstephan, Technical University of Munich, Freising-Weihenstephan 85354, Germany
| | - Nicolas Borie
- Université de Reims Champagne-Ardenne, CNRS, Institut de Chimie Moléculaire, Unité Mixte de Recherche 7312, Structure Fédérative de Recherche Condorcet, CNRS, Fédération de Recherche 3417, 51687 Reims, France
| | - Corinna Dawid
- Food Chemistry and Molecular Sensory Science, School of Life Sciences Weihenstephan, Technical University of Munich, Freising-Weihenstephan 85354, Germany
| | - Maude Cloutier
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique, Laval, QC H7V 1B7, Canada
| | - Sandra Villaume
- Université de Reims Champagne-Ardenne, Unité de Recherche Résistance Induite et Bioprotection des Plantes, Unité d'accueil 4707, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Unité sous contrat 1488, Structure Fédérative de Recherche Condorcet, CNRS, Fédération de Recherche 3417, 51687 Reims, France
| | - Sandrine Dhondt-Cordelier
- Université de Reims Champagne-Ardenne, Unité de Recherche Résistance Induite et Bioprotection des Plantes, Unité d'accueil 4707, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Unité sous contrat 1488, Structure Fédérative de Recherche Condorcet, CNRS, Fédération de Recherche 3417, 51687 Reims, France
| | - Jane Hubert
- Université de Reims Champagne-Ardenne, CNRS, Institut de Chimie Moléculaire, Unité Mixte de Recherche 7312, Structure Fédérative de Recherche Condorcet, CNRS, Fédération de Recherche 3417, 51687 Reims, France
| | - Sylvain Cordelier
- Université de Reims Champagne-Ardenne, Unité de Recherche Résistance Induite et Bioprotection des Plantes, Unité d'accueil 4707, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Unité sous contrat 1488, Structure Fédérative de Recherche Condorcet, CNRS, Fédération de Recherche 3417, 51687 Reims, France
| | - Florence Mazeyrat-Gourbeyre
- Université de Reims Champagne-Ardenne, Unité de Recherche Résistance Induite et Bioprotection des Plantes, Unité d'accueil 4707, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Unité sous contrat 1488, Structure Fédérative de Recherche Condorcet, CNRS, Fédération de Recherche 3417, 51687 Reims, France
| | - Christian Schmid
- Food Chemistry and Molecular Sensory Science, School of Life Sciences Weihenstephan, Technical University of Munich, Freising-Weihenstephan 85354, Germany
| | - Marc Ongena
- Microbial Processes and Interactions Laboratory, Structure Fédérative de Recherche Condorcet, CNRS, Fédération de Recherche 3417, Gembloux Agro-Bio Tech, University of Liège, Gembloux B-5030, Belgium
| | - Jean-Hugues Renault
- Université de Reims Champagne-Ardenne, CNRS, Institut de Chimie Moléculaire, Unité Mixte de Recherche 7312, Structure Fédérative de Recherche Condorcet, CNRS, Fédération de Recherche 3417, 51687 Reims, France
| | - Arnaud Haudrechy
- Université de Reims Champagne-Ardenne, CNRS, Institut de Chimie Moléculaire, Unité Mixte de Recherche 7312, Structure Fédérative de Recherche Condorcet, CNRS, Fédération de Recherche 3417, 51687 Reims, France
| | - Thomas Hofmann
- Food Chemistry and Molecular Sensory Science, School of Life Sciences Weihenstephan, Technical University of Munich, Freising-Weihenstephan 85354, Germany
| | - Fabienne Baillieul
- Université de Reims Champagne-Ardenne, Unité de Recherche Résistance Induite et Bioprotection des Plantes, Unité d'accueil 4707, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Unité sous contrat 1488, Structure Fédérative de Recherche Condorcet, CNRS, Fédération de Recherche 3417, 51687 Reims, France
| | - Christophe Clément
- Université de Reims Champagne-Ardenne, Unité de Recherche Résistance Induite et Bioprotection des Plantes, Unité d'accueil 4707, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Unité sous contrat 1488, Structure Fédérative de Recherche Condorcet, CNRS, Fédération de Recherche 3417, 51687 Reims, France
| | - Cyril Zipfel
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, United Kingdom
- Institute of Plant and Microbial Biology, Zurich-Basel Plant Science Center, University of Zurich, CH-8008 Zurich, Switzerland
| | - Charles Gauthier
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique, Laval, QC H7V 1B7, Canada
| | - Eric Déziel
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique, Laval, QC H7V 1B7, Canada;
| | - Stefanie Ranf
- Phytopathology, School of Life Sciences Weihenstephan, Technical University of Munich, Freising-Weihenstephan 85354, Germany;
| | - Stéphan Dorey
- Université de Reims Champagne-Ardenne, Unité de Recherche Résistance Induite et Bioprotection des Plantes, Unité d'accueil 4707, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Unité sous contrat 1488, Structure Fédérative de Recherche Condorcet, CNRS, Fédération de Recherche 3417, 51687 Reims, France;
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22
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Zhao F, Wu Y, Wang Q, Zheng M, Cui Q. Glycerol or crude glycerol as substrates make Pseudomonas aeruginosa achieve anaerobic production of rhamnolipids. Microb Cell Fact 2021; 20:185. [PMID: 34556134 PMCID: PMC8461908 DOI: 10.1186/s12934-021-01676-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Accepted: 09/12/2021] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The anaerobic production of rhamnolipids is significant in research and application, such as foamless fermentation and in situ production of rhamnolipids in the anoxic environments. Although a few studies reported that some rare Pseudomonas aeruginosa strains can produce rhamnolipids anaerobically, the decisive factors for anaerobic production of rhamnolipids were unknown. RESULTS Two possible hypotheses on the decisive factors for anaerobic production of rhamnolipids by P. aeruginosa were proposed, the strains specificity of rare P. aeruginosa (hypothesis 1) and the effect of specific substrates (hypothesis 2). This study assessed the anaerobic growth and rhamnolipids synthesis of three P. aeruginosa strains using different substrates. P. aeruginosa strains anaerobically grew well using all the tested substrates, but glycerol was the only carbon source that supported anaerobic production of rhamnolipids. Other carbon sources with different concentrations still failed for anaerobic production of rhamnolipids by P. aeruginosa. Nitrate was the excellent nitrogen source for anaerobic production of rhamnolipids. FTIR spectra analysis confirmed the anaerobically produced rhamnolipids by P. aeruginosa using glycerol. The anaerobically produced rhamnolipids decreased air-water surface tension to below 29.0 mN/m and emulsified crude oil with EI24 above 65%. Crude glycerol and 1, 2-propylene glycol also supported the anaerobic production of rhamnolipids by all P. aeruginosa strains. Prospects and bottlenecks to anaerobic production of rhamnolipids were also discussed. CONCLUSIONS Glycerol substrate was the decisive factor for anaerobic production of rhamnolipids by P. aeruginosa. Strain specificity resulted in the different anaerobic yield of rhamnolipids. Crude glycerol was one low cost substrate for anaerobic biosynthesis of rhamnolipids by P. aeruginosa. Results help advance the research on anaerobic production of rhamnolipids, deepen the biosynthesis theory of rhamnolipids and optimize the anaerobic production of rhamnolipids.
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Affiliation(s)
- Feng Zhao
- School of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China.
| | - Yuting Wu
- School of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China
| | - Qingzhi Wang
- School of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China
| | - Mengyao Zheng
- School of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China
| | - Qingfeng Cui
- Research Institute of Petroleum Exploration and Development (Langfang), Langfang, 065007, Hebei, China
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Bjerk TR, Severino P, Jain S, Marques C, Silva AM, Pashirova T, Souto EB. Biosurfactants: Properties and Applications in Drug Delivery, Biotechnology and Ecotoxicology. Bioengineering (Basel) 2021; 8:bioengineering8080115. [PMID: 34436118 PMCID: PMC8389267 DOI: 10.3390/bioengineering8080115] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Revised: 08/08/2021] [Accepted: 08/11/2021] [Indexed: 12/27/2022] Open
Abstract
Surfactants are amphiphilic compounds having hydrophilic and hydrophobic moieties in their structure. They can be of synthetic or of microbial origin, obtained respectively from chemical synthesis or from microorganisms’ activity. A new generation of ecofriendly surfactant molecules or biobased surfactants is increasingly growing, attributed to their versatility of applications. Surfactants can be used as drug delivery systems for a range of molecules given their capacity to create micelles which can promote the encapsulation of bioactives of pharmaceutical interest; besides, these assemblies can also show antimicrobial properties. The advantages of biosurfactants include their high biodegradability profile, low risk of toxicity, production from renewable sources, functionality under extreme pH and temperature conditions, and long-term physicochemical stability. The application potential of these types of polymers is related to their properties enabling them to be processed by emulsification, separation, solubilization, surface (interfacial) tension, and adsorption for the production of a range of drug delivery systems. Biosurfactants have been employed as a drug delivery system to improve the bioavailability of a good number of drugs that exhibit low aqueous solubility. The great potential of these molecules is related to their auto assembly and emulsification capacity. Biosurfactants produced from bacteria are of particular interest due to their antibacterial, antifungal, and antiviral properties with therapeutic and biomedical potential. In this review, we discuss recent advances and perspectives of biosurfactants with antimicrobial properties and how they can be used as structures to develop semisolid hydrogels for drug delivery, in environmental bioremediation, in biotechnology for the reduction of production costs and also their ecotoxicological impact as pesticide alternative.
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Affiliation(s)
- Thiago R. Bjerk
- Institute of Technology and Research (ITP), Av. Murilo Dantas 300, Aracaju 49010-390, Brazil; (T.R.B.); (P.S.); (S.J.); (C.M.)
| | - Patricia Severino
- Institute of Technology and Research (ITP), Av. Murilo Dantas 300, Aracaju 49010-390, Brazil; (T.R.B.); (P.S.); (S.J.); (C.M.)
- Industrial Biotechnology Program, University of Tiradentes (UNIT), Av. Murilo Dantas 300, Aracaju 49032-490, Brazil
| | - Sona Jain
- Institute of Technology and Research (ITP), Av. Murilo Dantas 300, Aracaju 49010-390, Brazil; (T.R.B.); (P.S.); (S.J.); (C.M.)
| | - Conrado Marques
- Institute of Technology and Research (ITP), Av. Murilo Dantas 300, Aracaju 49010-390, Brazil; (T.R.B.); (P.S.); (S.J.); (C.M.)
- Industrial Biotechnology Program, University of Tiradentes (UNIT), Av. Murilo Dantas 300, Aracaju 49032-490, Brazil
| | - Amélia M. Silva
- Department of Biology and Environment, School of Life Sciences and Environment, University of Trás-os-Montes and Alto Douro (UTAD), 5001-801 Vila Real, Portugal;
- Centre for Research and Technology of Agro-Environmental and Biological Sciences (CITAB), University of Trás-os-Montes and Alto Douro (UTAD), 5001-801 Vila Real, Portugal
| | - Tatiana Pashirova
- Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Center of Russian Academy of Sciences, Arbuzov St. 8, 420088 Kazan, Russia;
| | - Eliana B. Souto
- CEB—Centre of Biological Engineering, Campus de Gualtar, University of Minho, 4710-057 Braga, Portugal
- Department of Pharmaceutical Technology, Faculty of Pharmacy, University of Coimbra, Pólo das Ciências da Saúde, Azinhaga de Santa Comba, 3000-548 Coimbra, Portugal
- Correspondence:
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Sun H, Wang L, Nie H, Diwu Z, Nie M, Zhang B. Optimization and characterization of rhamnolipid production by Pseudomonas aeruginosa NY3 using waste frying oil as the sole carbon. Biotechnol Prog 2021; 37:e3155. [PMID: 33871921 DOI: 10.1002/btpr.3155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Revised: 04/14/2021] [Accepted: 04/15/2021] [Indexed: 11/06/2022]
Abstract
Yield and cost are two major factors limiting the widespread use of rhamnolipids (RLs). In the present study, waste frying oil (WFO) was used as the sole carbon source to produce environmentally friendly RLs by Pseudomonas aeruginosa NY3. The Plackett-Burman design (PBD) and Box-Behnken design (BBD) methods were used to maximize the production yield of RL. The PBD results showed that the concentrations of NaNO3 , Na2 HPO4 , and trace elements were the key factors affecting the yield of RL. Furthermore, the BBD results showed that at NaNO3 , Na2 HPO4 , and trace elements concentrations were 4.95, 0.66, and 0.64 mL/L, respectively, the average RL yield reached 9.15 ± 0.52 g/L, 1.58-fold higher than that observed before optimization. Fourier transform infrared spectroscopy (FTIR) and liquid chromatography-ion trap-time of flight mass spectrometry (LCMS-IT-TOF) were used to elucidate the diversity of RL congeners. The results showed that, after optimization, the RL congener diversity increased, and the major RL constituent was converted from di-RLs (64.04%) to mono-RLs (60.44%). These results suggested that the concentrations of the components contained in the culture medium of P. aeruginosa NY3 influenced not only the yield of RL, but also its congener distribution.
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Affiliation(s)
- Han Sun
- College of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an, China
| | - Lei Wang
- Research Institute of Membrane Separation Technology of Shaanxi Province, Xi'an, China
| | - Hongyun Nie
- College of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an, China
| | - Zhenjun Diwu
- Shaanxi Key Laboratory of Membrane Separation, Xi'an, China
| | - Maiqian Nie
- Research Institute of Membrane Separation Technology of Shaanxi Province, Xi'an, China
| | - Bo Zhang
- College of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an, China
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Cao J, Wang W, Zhao Z, Liu X, Li QX. Genome, metabolic pathways and characteristics of cometabolism of dibenzothiophene and the biodiesel byproduct glycerol in Paraburkholderia sp. C3. BIORESOURCE TECHNOLOGY 2021; 326:124699. [PMID: 33535150 DOI: 10.1016/j.biortech.2021.124699] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2020] [Revised: 01/04/2021] [Accepted: 01/06/2021] [Indexed: 06/12/2023]
Abstract
Utilization of glycerol, a biodiesel byproduct, has not been well explored. In the present study, glycerol and the other carbon sources were studied for cometabolism of dibenzothiophene (DBT), a model chemical commonly used in bioremediation studies, by Paraburkholderia sp. C3. This study showed a direct association between rhamnolipids (RLs) biosynthesis and DBT biodegradation induced by different carbon sources in a Paraburkholderia specie. Glycerol can induce the strain C3 produce at least four RLs. The RL precursor is mainly derived from the fatty acid synthesis (FAS II) and β-oxidation pathway. The genome contained two (fabF and fabG) and four (fadA, fadE, fadB and echA) genes involved in FAS II and β-oxidation, respectively. The genome also carried the rhlA and rhlB genes involved in rhamnosyltransferase for RL biosynthesis and two DBT dioxygenase genes (nahAc and catA). The findings suggest a viable approach of using the biodiesel byproduct glycerol to remediate contaminated environments.
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Affiliation(s)
- Jia Cao
- School of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing 100083, China; Key Laboratory of Water and Sediment Sciences, Ministry of Education, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China; Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Weijun Wang
- School of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing 100083, China
| | - Zixi Zhao
- School of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing 100083, China
| | - Xiaolu Liu
- School of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing 100083, China.
| | - Qing X Li
- Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, HI 96822, USA
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Development and Genetic Engineering of Hyper-Producing Microbial Strains for Improved Synthesis of Biosurfactants. Mol Biotechnol 2021; 63:267-288. [PMID: 33523418 DOI: 10.1007/s12033-021-00302-1] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/13/2021] [Indexed: 10/22/2022]
Abstract
Current research energies are fixated on the synthesis of environmentally friendly and non-hazardous products, which include finding and recognizing biosurfactants that can substitute synthetic surfactants. Microbial biosurfactants are surface-active compounds synthesized intracellularly or extracellularly. To use biosurfactants in various industries, it is essential to understand scientific engagements that demonstrate its potentials as real advancement in the 21st century. Other than applying a substantial effect on the world economic market, engineered hyper-producing microbial strains in combination with optimized cultivation parameters have made it probable for many industrial companies to receive the profits of 'green' biosurfactant innovation. There needs to be an emphasis on the worldwide state of biosurfactant synthesis, expression of biosurfactant genes in expressive host systems, the recent developments, and prospects in this line of research. Thus, molecular dynamics with respect to genetic engineering of biosynthetic genes are proposed as new biotechnological tools for development, improved synthesis, and applications of biosurfactants. For example, mutant and hyper-producing recombinants have been designed efficaciously to advance the nature, quantity, and quality of biosurfactants. The fastidious and deliberate investigation will prompt a comprehension of the molecular dynamics and phenomena in new microorganisms. Throughout the decade, valuable data on the molecular genetics of biosurfactant have been produced, and this solid foundation would encourage application-oriented yields of the biosurfactant production industry and expand its utilization in diverse fields. Therefore, the conversations among different interdisciplinary experts from various scientific interests such as microbiology, biochemistry, molecular biology, and genetics are indispensable and significant to accomplish these objectives.
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Rhamnolipid the Glycolipid Biosurfactant: Emerging trends and promising strategies in the field of biotechnology and biomedicine. Microb Cell Fact 2021; 20:1. [PMID: 33397389 PMCID: PMC7784359 DOI: 10.1186/s12934-020-01497-9] [Citation(s) in RCA: 102] [Impact Index Per Article: 34.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Accepted: 12/15/2020] [Indexed: 02/06/2023] Open
Abstract
Rhamnolipids (RLs) are surface-active compounds and belong to the class of glycolipid biosurfactants, mainly produced from Pseudomonas aeruginosa. Due to their non-toxicity, high biodegradability, low surface tension and minimum inhibitory concentration values, they have gained attention in various sectors like food, healthcare, pharmaceutical and petrochemicals. The ecofriendly biological properties of rhamnolipids make them potent materials to be used in therapeutic applications. RLs are also known to induce apoptosis and thus, able to inhibit proliferation of cancer cells. RLs can also act as immunomodulators to regulate the humoral and cellular immune systems. Regarding their antimicrobial property, they lower the surface hydrophobicity, destruct the cytoplasmic membrane and lower the critical micelle concentration to kill the bacterial cells either alone or in combination with nisin possibly due to their role in modulating outer membrane protein. RLs are also involved in the synthesis of nanoparticles for in vivo drug delivery. In relation to economic benefits, the post-harvest decay of food can be decreased by RLs because they prevent the mycelium growth, spore germination of fungi and inhibit the emergence of biofilm formation on food. The present review focuses on the potential uses of RLs in cosmetic, pharmaceutical, food and health-care industries as the potent therapeutic agents.
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Soberón‐Chávez G, González‐Valdez A, Soto‐Aceves MP, Cocotl‐Yañez M. Rhamnolipids produced by Pseudomonas: from molecular genetics to the market. Microb Biotechnol 2021; 14:136-146. [PMID: 33151628 PMCID: PMC7888470 DOI: 10.1111/1751-7915.13700] [Citation(s) in RCA: 45] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Revised: 10/18/2020] [Accepted: 10/20/2020] [Indexed: 12/31/2022] Open
Abstract
Rhamnolipids are biosurfactants with a wide range of industrial applications that entered into the market a decade ago. They are naturally produced by Pseudomonas aeruginosa and some Burkholderia species. Occasionally, some strains of different bacterial species, like Pseudomonas chlororaphis NRRL B-30761, which have acquired RL-producing ability by horizontal gene transfer, have been described. P. aeruginosa, the ubiquitous opportunistic pathogenic bacterium, is the best rhamnolipids producer, but Pseudomonas putida has been used as heterologous host for the production of this biosurfactant with relatively good yields. The molecular genetics of rhamnolipids production by P. aeruginosa has been widely studied not only due to the interest in developing overproducing strains, but because it is coordinately regulated with the expression of different virulence-related traits by the quorum-sensing response. Here, we highlight how the research of the molecular mechanisms involved in rhamnolipid production have impacted the development of strains that are suitable for industrial production of this biosurfactant, as well as some perspectives to improve these industrial useful strains.
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Affiliation(s)
- Gloria Soberón‐Chávez
- Departamento de Biología Molecular y BiotecnologíaInstituto de Investigaciones BiomédicasUniversidad Nacional Autónoma de MéxicoCiudad Universitaria, CDMXCoyoacanMéxico
| | - Abigail González‐Valdez
- Departamento de Biología Molecular y BiotecnologíaInstituto de Investigaciones BiomédicasUniversidad Nacional Autónoma de MéxicoCiudad Universitaria, CDMXCoyoacanMéxico
| | - Martín P. Soto‐Aceves
- Departamento de Biología Molecular y BiotecnologíaInstituto de Investigaciones BiomédicasUniversidad Nacional Autónoma de MéxicoCiudad Universitaria, CDMXCoyoacanMéxico
| | - Miguel Cocotl‐Yañez
- Departamento de Microbiología y ParasitologíaFacultad de MedicinaUniversidad Nacional Autónoma de MéxicoCiudad Universitaria, CDMXCoyoacanMéxico
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Wittgens A, Rosenau F. Heterologous Rhamnolipid Biosynthesis: Advantages, Challenges, and the Opportunity to Produce Tailor-Made Rhamnolipids. Front Bioeng Biotechnol 2020; 8:594010. [PMID: 33195161 PMCID: PMC7642724 DOI: 10.3389/fbioe.2020.594010] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Accepted: 10/07/2020] [Indexed: 12/18/2022] Open
Abstract
The first heterologous expression of genes responsible for the production of rhamnolipids was already implemented in the mid-1990s during the functional identification of the rhlAB operon. This was the starting shot for multiple approaches to establish the rhamnolipid biosynthesis in different host organisms. Since most of the native rhamnolipid producing organisms are human or plant pathogens, the intention for these ventures was the establishment of non-pathogenic organisms as heterologous host for the production of rhamnolipids. The pathogenicity of producing organisms is one of the bottlenecks for applications of rhamnolipids in many industrial products especially foods and cosmetics. The further advantage of heterologous rhamnolipid production is the circumvention of the complex regulatory network, which regulates the rhamnolipid biosynthesis in wild type production strains. Furthermore, a suitable host with an optimal genetic background to provide sufficient amounts of educts allows the production of tailor-made rhamnolipids each with its specific physico-chemical properties depending on the contained numbers of rhamnose sugar residues and the numbers, chain length and saturation degree of 3-hydroxyfatty acids. The heterologous expression of rhl genes can also enable the utilization of unusual carbon sources for the production of rhamnolipids depending on the host organism.
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Affiliation(s)
- Andreas Wittgens
- Institute of Pharmaceutical Biotechnology, Ulm University, Ulm, Germany.,Ulm Center for Peptide Pharmaceuticals (U-PEP), Ulm University, Ulm, Germany
| | - Frank Rosenau
- Institute of Pharmaceutical Biotechnology, Ulm University, Ulm, Germany.,Ulm Center for Peptide Pharmaceuticals (U-PEP), Ulm University, Ulm, Germany.,Department Synthesis of Macromolecules, Max-Planck-Institute for Polymer Research Mainz, Mainz, Germany
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Sivakumar R, Gunasekaran P, Rajendhran J. Functional characterization of asnC family transcriptional regulator in Pseudomonas aeruginosa PGPR2 during root colonization. Mol Biol Rep 2020; 47:7941-7957. [PMID: 33011891 DOI: 10.1007/s11033-020-05872-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Accepted: 09/28/2020] [Indexed: 12/18/2022]
Abstract
Transcriptional regulators in bacteria are the crucial players in mediating communication between environmental cues and DNA transcription through a complex network process. Pseudomonas aeruginosa PGPR2 is an efficient root colonizer and a biocontrol strain. Previously, we identified that the transcriptional regulator, asnC, negatively regulates the corn root colonization of P. aeruginosa PGPR2. In a transposon insertion sequencing (INSeq) screen, the asnC insertion mutant was positively selected during root colonization, meaning the disruption of asnC improves the fitness of the P. aeruginosa PGPR2 strain for the root colonization. In this study, we constructed isogenic mutant of asnC family transcriptional regulator encoded by PGPR2_17510 by allele exchange mutagenesis. The ΔasnC mutant was able to efficiently colonize corn roots with a twofold increase in population when compared to the wild-type strain. Similarly, the mutant strain outcompeted the wild-type strain in a competition assay, where the mutant strain represented 90% of the total population recovered from the root. We compared the whole transcriptome of the wild-type and the ΔasnC mutant of P. aeruginosa PGPR2 when exposed to the corn root exudates. The RNA-Seq revealed that a total of 360 genes were differentially expressed in the ΔasnC strain of P. aeruginosa PGPR2. Inactivation of asnC transcriptional regulator resulted in the up-regulation of several genetic factors implicated in metabolism, uptake of nutrients, motility, stress response, and signal transduction, which could play crucial roles in root colonization. This notion was further validated by phenotypic characterization and quantification of transcription pattern of selected genes associated with metabolism, motility, and carbon catabolite repression between wild type and mutant strain, which was in agreement with transcriptome data. Similarly, ΔasnC strain formed increased biofilm on abiotic surface validating our RNA-seq analysis, where transcript levels of several genes associated with biofilm formation were up-regulated in the mutant strain. We report that the inactivation of an asnC family transcriptional regulator encoded by PGPR2_17510 enhances the root colonization and biofilm-forming ability of P. aeruginosa PGPR2. Together, our results provide evidence for the molecular adaptations that enable ΔasnC mutant strain to colonize on the corn roots and to form a biofilm.
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Affiliation(s)
- Ramamoorthy Sivakumar
- Department of Genetics, School of Biological Sciences, Madurai Kamaraj University, Madurai, 625 021, India
| | | | - Jeyaprakash Rajendhran
- Department of Genetics, School of Biological Sciences, Madurai Kamaraj University, Madurai, 625 021, India.
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Tiso T, Ihling N, Kubicki S, Biselli A, Schonhoff A, Bator I, Thies S, Karmainski T, Kruth S, Willenbrink AL, Loeschcke A, Zapp P, Jupke A, Jaeger KE, Büchs J, Blank LM. Integration of Genetic and Process Engineering for Optimized Rhamnolipid Production Using Pseudomonas putida. Front Bioeng Biotechnol 2020; 8:976. [PMID: 32974309 PMCID: PMC7468518 DOI: 10.3389/fbioe.2020.00976] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Accepted: 07/27/2020] [Indexed: 12/27/2022] Open
Abstract
Rhamnolipids are biosurfactants produced by microorganisms with the potential to replace synthetic compounds with petrochemical origin. To promote industrial use of rhamnolipids, recombinant rhamnolipid production from sugars needs to be intensified. Since this remains challenging, the aim of the presented research is to utilize a multidisciplinary approach to take a step toward developing a sustainable rhamnolipid production process. Here, we developed expression cassettes for stable integration of the rhamnolipid biosynthesis genes into the genome outperformed plasmid-based expression systems. Furthermore, the genetic stability of the production strain was improved by using an inducible promoter. To enhance rhamnolipid synthesis, energy- and/or carbon-consuming traits were removed: mutants negative for the synthesis of the flagellar machinery or the storage polymer PHA showed increased production by 50%. Variation of time of induction resulted in an 18% increase in titers. A scale-up from shake flasks was carried out using a 1-L bioreactor. By recycling of the foam, biomass loss could be minimized and a rhamnolipid titer of up to 1.5 g/L was achieved without using mechanical foam destroyers or antifoaming agents. Subsequent liquid-liquid extraction was optimized by using a suitable minimal medium during fermentation to reduce undesired interphase formation. A technical-scale production process was designed and evaluated by a life-cycle assessment (LCA). Different process chains and their specific environmental impact were examined. It was found that next to biomass supply, the fermentation had the biggest environmental impact. The present work underlines the need for multidisciplinary approaches to address the challenges associated with achieving sustainable production of microbial secondary metabolites. The results are discussed in the context of the challenges of microbial biosurfactant production using hydrophilic substrates on an industrial scale.
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Affiliation(s)
- Till Tiso
- iAMB – Institute of Applied Microbiology, ABBt – Aachen Biology and Biotechnology, RWTH Aachen University, Aachen, Germany
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, Jülich, Germany
| | - Nina Ihling
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, Jülich, Germany
- Chair of Biochemical Engineering (AVT.BioVT), RWTH Aachen University, Aachen, Germany
| | - Sonja Kubicki
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, Jülich, Germany
- Institute of Molecular Enzyme Technology, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany
| | - Andreas Biselli
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, Jülich, Germany
- Fluid Process Engineering (AVT.FVT), RWTH Aachen University, Aachen, Germany
| | - Andreas Schonhoff
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, Jülich, Germany
- Institute of Energy and Climate Research – Systems Analysis and Technology Evaluation (IEK-STE), Forschungszentrum Jülich GmbH, Jülich, Germany
| | - Isabel Bator
- iAMB – Institute of Applied Microbiology, ABBt – Aachen Biology and Biotechnology, RWTH Aachen University, Aachen, Germany
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, Jülich, Germany
| | - Stephan Thies
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, Jülich, Germany
- Institute of Molecular Enzyme Technology, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany
| | - Tobias Karmainski
- iAMB – Institute of Applied Microbiology, ABBt – Aachen Biology and Biotechnology, RWTH Aachen University, Aachen, Germany
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, Jülich, Germany
| | - Sebastian Kruth
- iAMB – Institute of Applied Microbiology, ABBt – Aachen Biology and Biotechnology, RWTH Aachen University, Aachen, Germany
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, Jülich, Germany
| | - Anna-Lena Willenbrink
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, Jülich, Germany
- Fluid Process Engineering (AVT.FVT), RWTH Aachen University, Aachen, Germany
| | - Anita Loeschcke
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, Jülich, Germany
- Institute of Molecular Enzyme Technology, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany
| | - Petra Zapp
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, Jülich, Germany
- Institute of Energy and Climate Research – Systems Analysis and Technology Evaluation (IEK-STE), Forschungszentrum Jülich GmbH, Jülich, Germany
| | - Andreas Jupke
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, Jülich, Germany
- Fluid Process Engineering (AVT.FVT), RWTH Aachen University, Aachen, Germany
| | - Karl-Erich Jaeger
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, Jülich, Germany
- Institute of Molecular Enzyme Technology, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany
- Institute of Bio- and Geosciences IBG 1: Biotechnology, Forschungszentrum Jülich GmbH, Jülich, Germany
| | - Jochen Büchs
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, Jülich, Germany
- Chair of Biochemical Engineering (AVT.BioVT), RWTH Aachen University, Aachen, Germany
| | - Lars M. Blank
- iAMB – Institute of Applied Microbiology, ABBt – Aachen Biology and Biotechnology, RWTH Aachen University, Aachen, Germany
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, Jülich, Germany
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Drakontis CE, Amin S. Biosurfactants: Formulations, properties, and applications. Curr Opin Colloid Interface Sci 2020. [DOI: 10.1016/j.cocis.2020.03.013] [Citation(s) in RCA: 89] [Impact Index Per Article: 22.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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Conceição KS, de Alencar Almeida M, Sawoniuk IC, Marques GD, de Sousa Faria-Tischer PC, Tischer CA, Vignoli JA, Camilios-Neto D. Rhamnolipid production by Pseudomonas aeruginosa grown on membranes of bacterial cellulose supplemented with corn bran water extract. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:30222-30231. [PMID: 32451891 DOI: 10.1007/s11356-020-09315-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Accepted: 05/14/2020] [Indexed: 06/11/2023]
Abstract
Surfactants represent a billionaire market of amphiphilic molecules with worldwide applications in almost every branch of modern industry. The most common surfactants, available and currently used, are chemically produced. However, there is an urge to replace these chemical compounds with those obtained by mild and green technologies such as microbial biosurfactants produced by fermentative processes. Rhamnolipids are glycolipid biosurfactants that present highly effective surface-active properties and enormous market potential; nevertheless, their production costs remain not competitive. Here, we present a process of rhamnolipid production by static submerged cultivation using membranes of bacterial cellulose as substrate. The mixture of the rhamnolipid congeners was characterized showing effective surface-active properties and high amount of di-rhamnolipids (95.6%). Through this fermentative technology, 15.8 g/L of rhamnolipid was reach using a very simple and low-cost medium. The present process might decrease biosurfactant production cost, avoid foam formation, and finally make rhamnolipid production more viable.
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Affiliation(s)
- Karen Stefany Conceição
- Department of Biochemistry and Biotechnology, Universidade Estadual de Londrina, Londrina, PR, 86057-970, Brazil
| | - Mayara de Alencar Almeida
- Department of Biochemistry and Biotechnology, Universidade Estadual de Londrina, Londrina, PR, 86057-970, Brazil
- Department of Biochemistry and Molecular Biology, Universidade Federal do Paraná, Curitiba, Brazil
| | - Isadora Caroline Sawoniuk
- Department of Biochemistry and Biotechnology, Universidade Estadual de Londrina, Londrina, PR, 86057-970, Brazil
| | - Gabriela Dornelas Marques
- Department of Biochemistry and Biotechnology, Universidade Estadual de Londrina, Londrina, PR, 86057-970, Brazil
| | | | - Cesar Augusto Tischer
- Department of Biochemistry and Biotechnology, Universidade Estadual de Londrina, Londrina, PR, 86057-970, Brazil
| | - Josiane Alessandra Vignoli
- Department of Biochemistry and Biotechnology, Universidade Estadual de Londrina, Londrina, PR, 86057-970, Brazil
| | - Doumit Camilios-Neto
- Department of Biochemistry and Biotechnology, Universidade Estadual de Londrina, Londrina, PR, 86057-970, Brazil.
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Genome Characterization of Pseudomonas aeruginosa KT1115, a High Di-rhamnolipid-Producing Strain with Strong Oils Metabolizing Ability. Curr Microbiol 2020; 77:1890-1895. [DOI: 10.1007/s00284-020-02009-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2020] [Accepted: 04/24/2020] [Indexed: 11/25/2022]
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Characterization of a New Mixture of Mono-Rhamnolipids Produced by Pseudomonas gessardii Isolated from Edmonson Point (Antarctica). Mar Drugs 2020; 18:md18050269. [PMID: 32443698 PMCID: PMC7281774 DOI: 10.3390/md18050269] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Revised: 05/14/2020] [Accepted: 05/18/2020] [Indexed: 12/16/2022] Open
Abstract
Rhamnolipids (RLs) are surface-active molecules mainly produced by Pseudomonas spp. Antarctica is one of the less explored places on Earth and bioprospecting for novel RL producer strains represents a promising strategy for the discovery of novel structures. In the present study, 34 cultivable bacteria isolated from Edmonson Point Lake, Ross Sea, Antarctica were subjected to preliminary screening for the biosurfactant activity. The positive strains were identified by 16S rRNA gene sequencing and the produced RLs were characterized by liquid chromatography coupled to high resolution mass spectrometry (LC-HRESIMS) and liquid chromatography coupled with tandem spectrometry (LC-MS/MS), resulting in a new mixture of 17 different RL congeners, with six previously undescribed RLs. We explored the influence of the carbon source on the RL composition using 12 different raw materials, such as monosaccharides, polysaccharides and petroleum industry derivatives, reporting for the first time the production of RLs using, as sole carbon source, anthracene and benzene. Moreover, we investigated the antimicrobial potential of the RL mixture, towards a panel of both Gram-positive and Gram-negative pathogens, reporting very interesting results towards Listeria monocytogenes with a minimum inhibitory concentration (MIC) value of 3.13 µg/mL. Finally, we report for the first time the antimicrobial activity of RLs towards three strains of the emerging multidrug resistant Stenotrophomonas maltophilia with MIC values of 12.5 µg/mL.
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Ru J, Huo Y, Yang Y. Microbial Degradation and Valorization of Plastic Wastes. Front Microbiol 2020; 11:442. [PMID: 32373075 PMCID: PMC7186362 DOI: 10.3389/fmicb.2020.00442] [Citation(s) in RCA: 184] [Impact Index Per Article: 46.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2019] [Accepted: 03/02/2020] [Indexed: 12/23/2022] Open
Abstract
A growing accumulation of plastic wastes has become a severe environmental and social issue. It is urgent to develop innovative approaches for the disposal of plastic wastes. In recent years, reports on biodegradation of synthetic plastics by microorganisms or enzymes have sprung up, and these offer a possibility to develop biological treatment technology for plastic wastes. In this review, we have comprehensively summarized the microorganisms and enzymes that are able to degrade a variety of generally used synthetic plastics, such as polyethylene (PE), polystyrene (PS), polypropylene (PP), polyvinyl chloride (PVC), polyurethane (PUR), and polyethylene terephthalate (PET). In addition, we have highlighted the microbial metabolic pathways for plastic depolymerization products and the current attempts toward utilization of such products as feedstocks for microbial production of chemicals with high value. Taken together, these findings will contribute to building a conception of bio-upcycling plastic wastes by connecting the biodegradation of plastic wastes to the biosynthesis of valuable chemicals in microorganisms. Last, but not least, we have discussed the challenges toward microbial degradation and valorization of plastic wastes.
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Affiliation(s)
- Jiakang Ru
- Department of Biology, School of Life Science, Beijing Institute of Technology, Beijing, China
| | - Yixin Huo
- Department of Biology, School of Life Science, Beijing Institute of Technology, Beijing, China
- Key Laboratory of Molecular Medicine and Biotherapy, Beijing Institute of Technology, Beijing, China
| | - Yu Yang
- Department of Biology, School of Life Science, Beijing Institute of Technology, Beijing, China
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Exploiting the Natural Diversity of RhlA Acyltransferases for the Synthesis of the Rhamnolipid Precursor 3-(3-Hydroxyalkanoyloxy)Alkanoic Acid. Appl Environ Microbiol 2020; 86:AEM.02317-19. [PMID: 31924623 PMCID: PMC7054101 DOI: 10.1128/aem.02317-19] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Accepted: 12/18/2019] [Indexed: 01/24/2023] Open
Abstract
While rhamnolipids of the Pseudomonas aeruginosa type are commercially available, the natural diversity of rhamnolipids and their origin have barely been investigated. Here, we collected known and identified new rhlA genes encoding the acyltransferase responsible for the synthesis of the lipophilic rhamnolipid precursor 3-(3-hydroxyalkanoyloxy)alkanoic acid (HAA). Generally, all homologs were found in Betaproteobacteria and Gammaproteobacteria A likely horizontal gene transfer event into Actinobacteria is the only identified exception. The phylogeny of the RhlA homologs from Pseudomonas and Burkholderia species is consistent with the organism phylogeny, and genes involved in rhamnolipid synthesis are located in operons. In contrast, RhlA homologs from the Enterobacterales do not follow the organisms' phylogeny but form their own branch. Furthermore, in many Enterobacterales and Halomonas from the Oceanospirillales, an isolated rhlA homolog can be found in the genome. The RhlAs from Pseudomonas aeruginosa PA01, Pseudomonas fluorescens LMG 05825, Pantoea ananatis LMG 20103, Burkholderia plantarii PG1, Burkholderia ambifaria LMG 19182, Halomonas sp. strain R57-5, Dickeya dadantii Ech586, and Serratia plymuthica PRI-2C were expressed in Escherichia coli and tested for HAA production. Indeed, except for the Serratia RhlA, HAAs were produced with the engineered strains. A detailed analysis of the produced HAA congeners by high-performance liquid chromatography coupled to tandem mass spectrometry (HPLC-MS/MS) highlights the congener specificity of the RhlA proteins. The congener length varies from 4 to 18 carbon atoms, with the main congeners consisting of different combinations of saturated or monounsaturated C10, C12, and C14 fatty acids. The results are discussed in the context of the phylogeny of this unusual enzymatic activity.IMPORTANCE The RhlA specificity explains the observed differences in 3-(3-hydroxyalkanoyloxy)alkanoic acid (HAA) congeners. Whole-cell catalysts can now be designed for the synthesis of different congener mixtures of HAAs and rhamnolipids, thereby contributing to the envisaged synthesis of designer HAAs.
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Nawrath MM, Ottenheim C, Wu JC, Zimmermann W. Pantoea sp. P37 as a novel nonpathogenic host for the heterologous production of rhamnolipids. Microbiologyopen 2020; 9:e1019. [PMID: 32113194 PMCID: PMC7221421 DOI: 10.1002/mbo3.1019] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Revised: 02/08/2020] [Accepted: 02/11/2020] [Indexed: 12/21/2022] Open
Abstract
Microbially derived surfactants, so‐called biosurfactants, have attracted significant attention as an environmentally friendly alternative to their chemically synthesized counterparts. Particularly, rhamnolipids offer a large potential with their outstanding surfactant properties such as complete biodegradability, low toxicity, and stability. Rhamnolipids are naturally synthesized by the opportunistic human pathogen Pseudomonas aeruginosa under the tight regulation of a highly complex quorum‐sensing system. The heterologous production of mono‐rhamnolipids by a newly isolated nonpathogenic strain of the genus Pantoea was investigated. Analysis of the genome obtained by a chimeric assembly of Nanopore long reads and high‐quality Illumina reads suggested that the strain has evolved to an epiphytic rather than a pathogenic lifestyle. Functional heterologous expression of the mono‐rhamnolipid operon rhlAB derived from a P. aeruginosa strain was established and confirmed by HPLC analysis. Transcriptome analysis indicated destabilizing effects of the produced rhamnolipids on the cell envelope of the host resulting in the induction of molecular stress responses. After integration of the rmlBCDA operon, extracellular rhamnolipids in amounts up to 0.4 g/L could be detected and were identified as a mono‐rhamnolipid Rha‐C10‐C10 by MALDI‐TOF mass spectrometry.
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Affiliation(s)
- Margarete Monika Nawrath
- Department of Microbiology and Bioprocess Technology, Institute of Biochemistry, Leipzig University, Leipzig, Germany.,Institute of Chemical and Engineering Sciences, Agency for Sciences, Technology and Research (A*STAR), Singapore City, Singapore
| | - Christoph Ottenheim
- Institute of Chemical and Engineering Sciences, Agency for Sciences, Technology and Research (A*STAR), Singapore City, Singapore
| | - Jin Chuan Wu
- Institute of Chemical and Engineering Sciences, Agency for Sciences, Technology and Research (A*STAR), Singapore City, Singapore
| | - Wolfgang Zimmermann
- Department of Microbiology and Bioprocess Technology, Institute of Biochemistry, Leipzig University, Leipzig, Germany
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Ujita Y, Sakata M, Yoshihara A, Hikichi Y, Kai K. Signal Production and Response Specificity in the phc Quorum Sensing Systems of Ralstonia solanacearum Species Complex. ACS Chem Biol 2019; 14:2243-2251. [PMID: 31513382 DOI: 10.1021/acschembio.9b00553] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Ralstonia solanacearum strains are devastating plant pathogens with global distribution, a wide host range, and genetic diversity, and they are now also referred to as the R. solanacearum species complex (RSSC). RSSC strains employ the quorum sensing (QS) system composed of the phcBSR operon to regulate their virulence on plants. The RSSC strains previously examined produce either (R)-methyl 3-hydroxymyristate (3-OH MAME) or (R)-methyl 3-hydroxypalmitate (3-OH PAME) as their QS signals. Analogously, the phylogenetic analyses of the signal synthase PhcB and the signal receptor PhcS from 15 RSSC strains revealed that these proteins have two clades dependent on their QS signal types. However, the biochemical mechanism underlying this selectivity of QS signal production remains to be elucidated. We demonstrated that the PhcB methyltransferases synthesize QS signals from the cognate fatty acids (R)-3-hydroxymyristic acid or (R)-3-hydroxypalmitic acid. The RSSC strains used here produced both fatty acids, and thus the selectivity of QS signal production depends on the activity of PhcB enzymes. On the other hand, the enantioselective supply of the precursors functioned in the production of enantiopure QS signals. The opposite QS signals weakly induced the production of virulence factors in the RSSC strains. Furthermore, the complementation of the phcB gene encoding the 3-OH PAME-type synthase to the phcB-deletion mutant of the 3-OH MAME-producing strain did not rescue its virulence on tomato plants. Taken together, we propose that the specific production of 3-OH MAME/3-OH PAME ensures full virulence of the RSSC strains.
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Affiliation(s)
- Yumeto Ujita
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Naka-ku, Sakai, Osaka 599-8531, Japan
| | - Megumi Sakata
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Naka-ku, Sakai, Osaka 599-8531, Japan
| | - Ayaka Yoshihara
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Naka-ku, Sakai, Osaka 599-8531, Japan
| | - Yasufumi Hikichi
- Laboratory of Plant Pathology and Biotechnology, Kochi University, 200 Otsu, Monobe, Nankoku, Kochi, 783-8502, Japan
| | - Kenji Kai
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Naka-ku, Sakai, Osaka 599-8531, Japan
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Du J, Zhang A, Zhang X, Si X, Cao J. Comparative analysis of rhamnolipid congener synthesis in neotype Pseudomonas aeruginosa ATCC 10145 and two marine isolates. BIORESOURCE TECHNOLOGY 2019; 286:121380. [PMID: 31048264 DOI: 10.1016/j.biortech.2019.121380] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Revised: 04/23/2019] [Accepted: 04/24/2019] [Indexed: 06/09/2023]
Abstract
A comparative study of rhamnolipid congener synthesis was performed using the neotype Pseudomonas aeruginosa ATCC 10145 and two marine isolates (1A01151 and 1A00364). Compared with the neotype, 1A01151 and 1A00364 showed increased production of rhamnolipids containing higher proportion of congeners with longer fatty acid chains (C10-C12 and C10-C12:1) and/or di-rhamnose moiety. These could reduce surface tension of water to lower minimum values of 21.3 mN m-1 and 25.7 mN m-1. The comparative profile of rhamnolipid congener composition, fatty acid content and gene expression suggested that elevated expression of rhlAB and rhlC throughout the fermentation process and enhanced accumulation of dTDP-l-rhamnose and fatty acid precursors (C12 and C12:1) at the onset of rhamnolipid accumulation were related to improved rhamnolipid production and surface-active property. This work provides insights into the metabolic relationship between rhamnolipids and related precursor biosynthesis, and could therefore be beneficial for process optimization for efficient rhamnolipid congener production.
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Affiliation(s)
- Jin Du
- The Institute of Seawater Desalination and Multipurpose Utilization, MNR, Tianjin 300192, PR China.
| | - Aijun Zhang
- The Institute of Seawater Desalination and Multipurpose Utilization, MNR, Tianjin 300192, PR China
| | - Xiaoqing Zhang
- The Institute of Seawater Desalination and Multipurpose Utilization, MNR, Tianjin 300192, PR China
| | - Xiaoguang Si
- The Institute of Seawater Desalination and Multipurpose Utilization, MNR, Tianjin 300192, PR China
| | - Junrui Cao
- The Institute of Seawater Desalination and Multipurpose Utilization, MNR, Tianjin 300192, PR China
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41
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Dulcey CE, López de Los Santos Y, Létourneau M, Déziel E, Doucet N. Semi-rational evolution of the 3-(3-hydroxyalkanoyloxy)alkanoate (HAA) synthase RhlA to improve rhamnolipid production in Pseudomonas aeruginosa and Burkholderia glumae. FEBS J 2019; 286:4036-4059. [PMID: 31177633 DOI: 10.1111/febs.14954] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2018] [Revised: 04/12/2019] [Accepted: 06/06/2019] [Indexed: 12/15/2022]
Abstract
The 3-(3-hydroxyalkanoyloxy)alkanoate (HAA) synthase RhlA is an essential enzyme involved in the biosynthesis of HAAs in Pseudomonas and Burkholderia species. RhlA modulates the aliphatic chain length in rhamnolipids, conferring distinct physicochemical properties to these biosurfactants exhibiting promising industrial and pharmaceutical value. A detailed molecular understanding of substrate specificity and catalytic performance in RhlA could offer protein engineering tools to develop designer variants involved in the synthesis of novel rhamnolipid mixtures for tailored eco-friendly products. However, current directed evolution progress remains limited due to the absence of high-throughput screening methodologies and lack of an experimentally resolved RhlA structure. In the present work, we used comparative modeling and chimeric-based approaches to perform a comprehensive semi-rational mutagenesis of RhlA from Pseudomonas aeruginosa. Our extensive RhlA mutational variants and chimeric hybrids between the Pseudomonas and Burkholderia homologs illustrate selective modulation of rhamnolipid alkyl chain length in both Pseudomonas aeruginosa and Burkholderia glumae. Our results also demonstrate the implication of a putative cap-domain motif that covers the catalytic site of the enzyme and provides substrate specificity to RhlA. This semi-rational mutant-based survey reveals promising 'hot-spots' for the modulation of RL congener patterns and potential control of enzyme activity, in addition to uncovering residue positions that modulate substrate selectivity between the Pseudomonas and Burkholderia functional homologs. DATABASE: Model data are available in the PMDB database under the accession number PM0081867.
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Affiliation(s)
- Carlos Eduardo Dulcey
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique (INRS), Université du Québec, Laval, Canada
| | - Yossef López de Los Santos
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique (INRS), Université du Québec, Laval, Canada
| | - Myriam Létourneau
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique (INRS), Université du Québec, Laval, Canada
| | - Eric Déziel
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique (INRS), Université du Québec, Laval, Canada
| | - Nicolas Doucet
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique (INRS), Université du Québec, Laval, Canada.,PROTEO, the Québec Network for Research on Protein Function, Engineering, and Applications, Université Laval, Canada
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Saur KM, Brumhard O, Scholz K, Hayen H, Tiso T. A pH shift induces high-titer liamocin production in Aureobasidium pullulans. Appl Microbiol Biotechnol 2019; 103:4741-4752. [DOI: 10.1007/s00253-019-09677-3] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2018] [Revised: 01/22/2019] [Accepted: 01/31/2019] [Indexed: 10/27/2022]
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Gutiérrez-Gómez U, Servín-González L, Soberón-Chávez G. Role of β-oxidation and de novo fatty acid synthesis in the production of rhamnolipids and polyhydroxyalkanoates by Pseudomonas aeruginosa. Appl Microbiol Biotechnol 2019; 103:3753-3760. [PMID: 30919102 DOI: 10.1007/s00253-019-09734-x] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2019] [Accepted: 02/02/2019] [Indexed: 10/27/2022]
Abstract
Pseudomonas aeruginosa are ubiquitous γ-proteobacteria capable of producing the biosurfactant rhamnolipids (RL) and the polymer polyhydroxyalkanoate (PHA). RL are glycolipids with high biotechnological potential, whereas PHA is used for the production of biodegradable plastics. It has been proposed that the β-oxidation pathway provides intermediates for RL biosynthesis, even when using a non-fatty acid carbon source for growth, while an intermediate of de novo fatty acid biosynthesis (FASII) pathway [(R)-3-hydroxyacyl-ACP] is used for PHA biosynthesis. The aim of this work is to study the inter-relationship of the RL and PHA biosynthetic pathways in a culture medium with a non-fatty acid carbon source, focusing on the role of FASII and β-oxidation in supplying the substrates for the first step in RL and PHA synthesis, carried out by the RhlA and PhaG enzymes, respectively. The PHA synthases (PhaC1 and PhaC2) are only able to use CoA-linked 3-hydroxy acids and the PhaG enzyme catalyzes the conversion of (R)-3-hydroxyacyl-ACP to (R)-3-hydroxyacyl-CoA, the substrate of PhaC1 and PhaC2. RhlA in turn catalyzes the synthesis of the RL precursor 3-(3-hydroxyalkanoyloxy) alkanoic acids (HAA) by the dimerization of two 3-hydroxyalkanoic acid molecules (that have been shown to be also (R)-3-hydroxyacyl-ACP). In this work, we show that RhlA can produce both RL and PHA precursors (presumably CoA-linked HAA), that the blockage of carbon flux through β-oxidation pathway does not decrease RL titer, and that the enoyl-CoA hydratase RhlY and enoyl-CoA hydratase/isomerase RhlZ produce the main fatty acids precursor of RL using as substrate also a FASII intermediate (presumably (S)-3-hydroxyacyl-CoA).
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Affiliation(s)
- Uriel Gutiérrez-Gómez
- Programa de Producción de Biomoléculas de Interés Biomédico en Bacterias y Hongos. Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Ciudad Universitaria, Apartado Postal 70228, C. P. 04510, CDMX, Mexico
| | - Luis Servín-González
- Programa de Producción de Biomoléculas de Interés Biomédico en Bacterias y Hongos. Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Ciudad Universitaria, Apartado Postal 70228, C. P. 04510, CDMX, Mexico
| | - Gloria Soberón-Chávez
- Programa de Producción de Biomoléculas de Interés Biomédico en Bacterias y Hongos. Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Ciudad Universitaria, Apartado Postal 70228, C. P. 04510, CDMX, Mexico.
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Hogan DE, Tian F, Malm SW, Olivares C, Palos Pacheco R, Simonich MT, Hunjan AS, Tanguay RL, Klimecki WT, Polt R, Pemberton JE, Curry JE, Maier RM. Biodegradability and toxicity of monorhamnolipid biosurfactant diastereomers. JOURNAL OF HAZARDOUS MATERIALS 2019; 364:600-607. [PMID: 30390580 PMCID: PMC6289288 DOI: 10.1016/j.jhazmat.2018.10.050] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2018] [Revised: 09/28/2018] [Accepted: 10/16/2018] [Indexed: 05/09/2023]
Abstract
Synthetic monorhamnolipids differ from biologically produced material because they are produced as single congeners, depending on the β-hydroxyalkanoic acid used during synthesis. Each congener is produced as one of four possible diastereomers resulting from two chiral centers at the carbinols of the lipid tails [(R,R), (R,S), (S,R) and (S,S)]. We compare the biodegradability (CO2 respirometry), acute toxicity (Microtox assay), embryo toxicity (Zebrafish assay), and cytotoxicity (xCELLigence and MTS assays) of synthetic rhamnosyl-β-hydroxydecanoyl-β-hydroxydecanoate (Rha-C10-C10) monorhamnolipids against biosynthesized monorhamnolipid mixtures (bio-mRL). All Rha-C10-C10 diastereomers and bio-mRL were inherently biodegradable ranging from 34 to 92% mineralized. The Microtox assay showed all Rha-C10-C10 diastereomers and bio-mRL are slightly toxic according to the US EPA ecotoxicity categories with 5 min EC50 values ranging from 39.6 to 87.5 μM. The zebrafish assay showed that of 22 developmental endpoints tested, only mortality was observed at 120 h post fertilization; all Rha-C10-C10 diastereomers and bio-mRL caused significant mortality at 640 μM, except the Rha-C10-C10 (R,R) which showed no developmental effects. xCELLigence and MTS showed IC50 values ranging from 103.4 to 191.1 μM for human lung cell line H1299 after 72 h exposure. These data provide key information regarding Rha-C10-C10 diastereomers that is pertinent when considering potential applications.
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Affiliation(s)
- David E Hogan
- Department of Soil, Water and Environmental Science, The University of Arizona, Tucson, AZ, 85721, USA
| | - Fei Tian
- Department of Soil, Water and Environmental Science, The University of Arizona, Tucson, AZ, 85721, USA
| | - Scott W Malm
- Department of Pharmacology and Toxicology, The University of Arizona, Tucson, AZ, 85721, USA
| | - Christopher Olivares
- Department of Chemical and Environmental Engineering, The University of Arizona, Tucson, AZ, 85721, USA
| | - Ricardo Palos Pacheco
- Department of Chemistry and Biochemistry, The University of Arizona, Tucson, AZ, 85721, USA
| | - Michael T Simonich
- Department of Environmental and Molecular Toxicology, Oregon State University, 1007 Agriculture & Life Sciences Building, Corvallis, OR 97331, USA
| | - Anoop S Hunjan
- Department of Pharmacology and Toxicology, The University of Arizona, Tucson, AZ, 85721, USA
| | - Robert L Tanguay
- Department of Environmental and Molecular Toxicology, Oregon State University, 1007 Agriculture & Life Sciences Building, Corvallis, OR 97331, USA
| | - Walter T Klimecki
- Department of Pharmacology and Toxicology, The University of Arizona, Tucson, AZ, 85721, USA
| | - Robin Polt
- Department of Chemistry and Biochemistry, The University of Arizona, Tucson, AZ, 85721, USA
| | - Jeanne E Pemberton
- Department of Chemistry and Biochemistry, The University of Arizona, Tucson, AZ, 85721, USA
| | - Joan E Curry
- Department of Soil, Water and Environmental Science, The University of Arizona, Tucson, AZ, 85721, USA
| | - Raina M Maier
- Department of Soil, Water and Environmental Science, The University of Arizona, Tucson, AZ, 85721, USA.
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Wu J, Zhang J, Zhang H, Gao M, Liu L, Zhan X. Recycling of cooking oil fume condensate for the production of rhamnolipids by Pseudomonas aeruginosa WB505. Bioprocess Biosyst Eng 2019; 42:777-784. [DOI: 10.1007/s00449-019-02081-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2018] [Accepted: 01/25/2019] [Indexed: 10/27/2022]
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Tan C, Zhang X, Zhu Z, Xu M, Yang T, Osire T, Yang S, Rao Z. Asp305Gly mutation improved the activity and stability of the styrene monooxygenase for efficient epoxide production in Pseudomonas putida KT2440. Microb Cell Fact 2019; 18:12. [PMID: 30678678 PMCID: PMC6345017 DOI: 10.1186/s12934-019-1065-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2018] [Accepted: 01/17/2019] [Indexed: 01/18/2023] Open
Abstract
Background Styrene monooxygenase (SMO) catalyzes the first step of aromatic alkene degradation yielding the corresponding epoxides. Because of its broad spectrum of substrates, the enzyme harbors a great potential for an application in medicine and chemical industries. Results In this study, we achieved higher enzymatic activity and better stability towards styrene by enlarging the ligand entrance tunnel and improving the hydrophobicity through error-prone PCR and site-saturation mutagenesis. It was found that Asp305 (D305) hindered the entrance of the FAD cofactor according to the model analysis. Therefore, substitution with amino acids possessing shorter side chains, like glycine, opened the entrance tunnel and resulted in up to 2.7 times higher activity compared to the wild-type enzyme. The half-lives of thermal inactivation for the variant D305G at 60 °C was 28.9 h compared to only 3.2 h of the wild type SMO. Moreover, overexpression of SMO in Pseudomonas putida KT2440 with NADH regeneration was carried out in order to improve biotransformation efficiency for epoxide production. A hexadecane/buffer (v/v) biphasic system was applied in order to minimize the inactivation effect of high substrate concentrations on the SMO enzyme. Finally, SMO activities of 190 U/g CDW were measured and a total amount of 20.5 mM (S)-styrene oxide were obtained after 8 h. Conclusions This study offers an alternative strategy for improved SMO expression and provides an efficient biocatalytic system for epoxide production via engineering the entrance tunnel of the enzyme’s active site. Electronic supplementary material The online version of this article (10.1186/s12934-019-1065-5) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Chunlin Tan
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, 1800 Lihu Road, Wuxi, 214122, Jiangsu, China
| | - Xian Zhang
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, 1800 Lihu Road, Wuxi, 214122, Jiangsu, China.
| | - Zhijing Zhu
- The School of Digital Media, Jiangnan University, Wuxi, 214122, China
| | - Meijuan Xu
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, 1800 Lihu Road, Wuxi, 214122, Jiangsu, China
| | - Taowei Yang
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, 1800 Lihu Road, Wuxi, 214122, Jiangsu, China
| | - Tolbert Osire
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, 1800 Lihu Road, Wuxi, 214122, Jiangsu, China
| | - Shangtian Yang
- Department of Chemical and Biomolecular Engineering, The Ohio State University, Columbus, OH, 43210, USA
| | - Zhiming Rao
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, 1800 Lihu Road, Wuxi, 214122, Jiangsu, China.
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Overproduction of rhamnolipids in Pseudomonas aeruginosa PA14 by redirection of the carbon flux from polyhydroxyalkanoate synthesis and overexpression of the rhlAB-R operon. Biotechnol Lett 2018; 40:1561-1566. [PMID: 30264296 DOI: 10.1007/s10529-018-2610-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2018] [Accepted: 09/24/2018] [Indexed: 10/28/2022]
Abstract
OBJECTIVE To construct Pseudomonas aeruginosa PA14 derivatives that overproduce rhamnolipids (RL) by blocking the synthesis of the carbon-storage polymer polyhydroxyalkanoates (PHA) and by overexpressing the rhlAB-R operon that encodes for enzymes of RL synthesis and the RhlR transcriptional regulator. RESULTS In contrast to previous results showing that overexpression of rhlAB-R genes in two P. aeruginosa strains (PAO1 and ATCC 9027) is sufficient to overproduce RL, we show that a PA14 derivative overexpressing the rhlAB-R operon did not increase the synthesis of these biosurfactants. In addition, PA14 mutants deficient in PHA production did not overproduce RL either. However, if the rhlAB-R genes were expressed in a mutant that is completely impaired in PHA synthesis, a significant increase in RL production was observed (59%). These results show that RL production in PA14 is limited both by the availability of fatty acid precursors and by the levels of the RhlA and RhlB enzymes that are involved in the synthesis of mono-RL. CONCLUSIONS The limitation of RL production by P. aeruginosa PA14 is multifactorial and diverse from the results obtained with other strains. Thus, the factors that limit RL production are particular to each P. aeruginosa strain, so strain-specific strategies should be developed to increase their production.
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On the road towards tailor-made rhamnolipids: current state and perspectives. Appl Microbiol Biotechnol 2018; 102:8175-8185. [DOI: 10.1007/s00253-018-9240-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2018] [Revised: 07/11/2018] [Accepted: 07/11/2018] [Indexed: 12/20/2022]
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Tan YN, Li Q. Microbial production of rhamnolipids using sugars as carbon sources. Microb Cell Fact 2018; 17:89. [PMID: 29884194 PMCID: PMC5994124 DOI: 10.1186/s12934-018-0938-3] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Accepted: 05/31/2018] [Indexed: 12/27/2022] Open
Abstract
Rhamnolipids are a class of biosurfactants with effective surface-active properties. The high cost of microbial production of rhamnolipids largely affects their commercial applications. To reduce the production post, research has been carried out in screening more powerful strains, engineering microbes with higher biosurfactant yields and exploring cheaper substrates to reduce the production cost. Extensive refining is required for biosurfactant production using oils and oil-containing wastes, necessitating the use of complex and expensive biosurfactant recovery methods such as extraction with solvents or acid precipitation. As raw materials normally can account for 10-30% of the overall production cost, sugars have been proven to be an alternative carbon source for microbial production of rhamnolipids due to its lower costs and straightforward processing techniques. Studies have thus been focused on using tropical agroindustrial crop residues as renewable substrates. Herein, we reviewed studies that are using sugar-containing substrates as carbon sources for producing rhamnolipids. We speculate that sugars derived from agricultural wastes rich in cellulose and sugar-containing wastes are potential carbon sources in fermentation while challenges still remain in large scales.
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Affiliation(s)
- Yun Nian Tan
- School of Chemical and Biomedical Engineering, Nanyang Technological University, 62 Nanyang Drive, Singapore, 637459 Singapore
- Institute of Chemical and Engineering Sciences, Agency for Science, Technology and Research, 1 Pesek Road, Singapore, Jurong Island 627833 Singapore
| | - Qingxin Li
- Institute of Chemical and Engineering Sciences, Agency for Science, Technology and Research, 1 Pesek Road, Singapore, Jurong Island 627833 Singapore
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Irorere VU, Smyth TJ, Cobice D, McClean S, Marchant R, Banat IM. Fatty acid synthesis pathway provides lipid precursors for rhamnolipid biosynthesis in Burkholderia thailandensis E264. Appl Microbiol Biotechnol 2018; 102:6163-6174. [PMID: 29752487 PMCID: PMC6013509 DOI: 10.1007/s00253-018-9059-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2018] [Revised: 04/25/2018] [Accepted: 04/27/2018] [Indexed: 11/29/2022]
Abstract
Rhamnolipid production was monitored for a period of 216 h using different substrates in Pseudomonas aeruginosa PAO1 and Burkholderia thailandensis E264 which showed comparable crude yields attained by both after 216 h. The crude yield for P. aeruginosa, however, was significantly higher at the early stages of fermentation (72 or 144 h). Additionally, P. aeruginosa produced rhamnolipid with odd and even carbon chain lipid moieties using odd carbon chain fatty acid substrates (up to 45.97 and 67.57%, respectively). In contrast, B. thailandensis produced rhamnolipid with predominantly even carbon chain lipid moieties (up to 99.26). These results indicate the use of the fatty acid synthesis (FAS II) pathway as the main source of lipid precursors in rhamnolipid biosynthesis by B. thailandensis. Isotope tracing using 0.25% stearic acid – d35 + 1% glycerol as carbon substrate showed a single pattern of deuterium incorporation: with predominantly less than 15 deuterium atoms incorporated into a single Di-C14-C14 rhamnolipid molecule. This further indicates that the FAS II pathway is the main source of the lipid precursor in rhamnolipid biosynthesis by B. thailandensis. The pathogenicity of these strains was also assessed, and results showed that B. thailandensis is significantly less pathogenic than P. aeruginosa with an LC50 at 24 h > 2500, approximately three logs higher than P. aeruginosa using the Galleria mellonella larva model.
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Affiliation(s)
- Victor U Irorere
- School of Biomedical Sciences, Faculty of Life and Health Sciences, Ulster University, Coleraine, Northern Ireland, BT52 1SA, UK
| | - Thomas J Smyth
- Department of Life Sciences, Institute of Technology Sligo, County Sligo, Ireland
| | - Diego Cobice
- School of Biomedical Sciences, Faculty of Life and Health Sciences, Ulster University, Coleraine, Northern Ireland, BT52 1SA, UK
| | - Stephen McClean
- School of Biomedical Sciences, Faculty of Life and Health Sciences, Ulster University, Coleraine, Northern Ireland, BT52 1SA, UK
| | - Roger Marchant
- School of Biomedical Sciences, Faculty of Life and Health Sciences, Ulster University, Coleraine, Northern Ireland, BT52 1SA, UK
| | - Ibrahim M Banat
- School of Biomedical Sciences, Faculty of Life and Health Sciences, Ulster University, Coleraine, Northern Ireland, BT52 1SA, UK.
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