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Raturi G, Chaudhary A, Rana V, Mandlik R, Sharma Y, Barvkar V, Salvi P, Tripathi DK, Kaur J, Deshmukh R, Dhar H. Microbial remediation and plant-microbe interaction under arsenic pollution. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 864:160972. [PMID: 36566865 DOI: 10.1016/j.scitotenv.2022.160972] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 12/11/2022] [Accepted: 12/12/2022] [Indexed: 06/17/2023]
Abstract
Arsenic contamination in aquatic and terrestrial ecosystem is a serious environmental issue. Both natural and anthropogenic processes can introduce it into the environment. The speciation of the As determine the level of its toxicity. Among the four oxidation states of As (-3, 0, +3, and + 5), As(III) and As(V) are the common species found in the environment, As(III) being the more toxic with adverse impact on the plants and animals including human health. Therefore, it is very necessary to remediate arsenic from the polluted water and soil. Different physicochemical as well as biological strategies can be used for the amelioration of arsenic polluted soil. Among the microbial approaches, oxidation of arsenite, methylation of arsenic, biosorption, bioprecipitation and bioaccumulation are the promising transformation activities in arsenic remediation. The purpose of this review is to discuss the significance of the microorganisms in As toxicity amelioration in soil, factors affecting the microbial remediation, interaction of the plants with As resistant bacteria, and the effect of microorganisms on plant arsenic tolerance mechanism. In addition, the exploration of genetic engineering of the bacteria has a huge importance in bioremediation strategies, as the engineered microbes are more potent in terms of remediation activity along with quick adaptively in As polluted sites.
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Affiliation(s)
- Gaurav Raturi
- National Agri-Food Biotechnology Institute (NABI), Mohali, India; Department of Biotechnology, Panjab University, Chandigarh, India
| | - Anchal Chaudhary
- National Agri-Food Biotechnology Institute (NABI), Mohali, India; Department of Biotechnology, Panjab University, Chandigarh, India
| | - Varnika Rana
- National Agri-Food Biotechnology Institute (NABI), Mohali, India
| | - Rushil Mandlik
- National Agri-Food Biotechnology Institute (NABI), Mohali, India; Department of Biotechnology, Panjab University, Chandigarh, India
| | - Yogesh Sharma
- National Agri-Food Biotechnology Institute (NABI), Mohali, India
| | - Vitthal Barvkar
- Department of Botany, Savitribai Phule Pune University, Pune, India
| | - Prafull Salvi
- National Agri-Food Biotechnology Institute (NABI), Mohali, India
| | | | - Jagdeep Kaur
- Department of Biotechnology, Panjab University, Chandigarh, India
| | - Rupesh Deshmukh
- National Agri-Food Biotechnology Institute (NABI), Mohali, India; Plaksha University, SAS Nagar, Punjab, India; Department of Biotechnology, Central University of Haryana, Mahendragarh, Haryana, India.
| | - Hena Dhar
- National Agri-Food Biotechnology Institute (NABI), Mohali, India.
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Screening of Azotobacter, Bacillus and Pseudomonas Species as Plant Growth-Promoting Bacteria. Processes (Basel) 2022. [DOI: 10.3390/pr11010080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
In this study, bacteria from the genus of Azotobacter, Bacillus and Pseudomonas were isolated from the roots of Phaseolus vulgaris and used as plant growth-promoting bacteria for Sinapis alba L., Brassica napus L., Amaranthus retroflexus L., Linum usitatissimum L., Panicum miliaceum L. and Rumex patientia L. plants. The results showed that all three bacteria had different effects on plants growth considering both sterile and non-sterile soil. Bacillus sp. induced the greatest influence in terms of the root length of Sinapis alba L. grown in sterile soil (with 28%), while considering non-sterile soil, Pseudomonas sp. increased the root and shoot length by 11.43% and 25.15%, respectively, compared to the blank sample. Azotobacter sp. exerted the highest beneficial influence on Brassica napus L. growth in non-sterile soil, since the root and shoot lengths were stimulated with 27.64% and 52.60%, respectively, compared to uninoculated plants. Bacillus sp. had a positive effect on the growth of the shoot length of Amaranthus retroflexus L. (with 30.30% in sterile soil and 3.69% in non-sterile soil compared to the control). Azotobacter sp. stimulated the growth of the root length of Rumex patientia L. with 35.29% in sterile soil and also the shoot length of Panicum miliaceum L. in non-sterile soil by 20.51% compared to the control. Further, the roots and shoots of Linum usitatissimum L. grown in non-sterile soil and in the presence of Pseudomonas sp. increased by 178.38% and 15.08%, respectively, compared to the flax grown in sterile soil. Statistically, according to Tukey’s Honestly Significant Difference (HSD) test results, not all observed differences in plants grown with the selected bacteria are significantly different compared to the control.
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Maldonado-Hernández J, Román-Ponce B, Arroyo-Herrera I, Guevara-Luna J, Ramos-Garza J, Embarcadero-Jiménez S, Estrada de Los Santos P, Wang ET, Vásquez-Murrieta MS. Metallophores production by bacteria isolated from heavy metal-contaminated soil and sediment at Lerma-Chapala Basin. Arch Microbiol 2022; 204:180. [PMID: 35175407 DOI: 10.1007/s00203-022-02780-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2021] [Revised: 12/14/2021] [Accepted: 01/28/2022] [Indexed: 11/02/2022]
Abstract
Environmental pollution as a result of heavy metals (HMs) is a worldwide problem and the implementation of eco-friendly remediation technologies is thus required. Metallophores, low molecular weight compounds, could have important biotechnological applications in the fields of agriculture, medicine, and bioremediation. This study aimed to isolate HM-resistant bacteria from soils and sediments of the Lerma-Chapala Basin and evaluated their abilities to produce metallophores and to promote plant growth. Bacteria from the Lerma-Chapala Basin produced metallophores for all the tested metal ions, presented a greater production of As3+ metallophores, and showed high HM resistance especially to Zn2+, As5+, and Ni2+. A total of 320 bacteria were isolated with 170 strains showing siderophores synthesis. Members of the Delftia and Pseudomonas genera showed above 92 percent siderophore units (psu) during siderophores production and hydroxamate proved to be the most common functional group among the analyzed siderophores. Our results provided evidence that Lerma-Chapala Basin bacteria and their metallophores could potentially be employed in bioremediation processes or may even have potential for applications in other biotechnological fields.
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Affiliation(s)
- Jessica Maldonado-Hernández
- Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prolongación Carpio y Plan de Ayala S/N, Col. Santo Tomás, Alcaldía Miguel Hidalgo, C.P. 11340, Mexico City, Mexico.,Universidad del Valle de México, Campus Chapultepec, Laboratorio 314, Observatorio No. 400, Col. 16 de Septiembre, Del. Miguel Hidalgo, C.P. 11810, Mexico City, Mexico
| | - Brenda Román-Ponce
- Universidad Politécnica del Estado de Morelos, Boulevard Cuauhnáhuac 556, Lomas del Texcal, 62550, Jiutepec, Morelos, Mexico
| | - Ivan Arroyo-Herrera
- Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prolongación Carpio y Plan de Ayala S/N, Col. Santo Tomás, Alcaldía Miguel Hidalgo, C.P. 11340, Mexico City, Mexico
| | - Joseph Guevara-Luna
- Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prolongación Carpio y Plan de Ayala S/N, Col. Santo Tomás, Alcaldía Miguel Hidalgo, C.P. 11340, Mexico City, Mexico
| | - Juan Ramos-Garza
- Universidad del Valle de México, Campus Chapultepec, Laboratorio 314, Observatorio No. 400, Col. 16 de Septiembre, Del. Miguel Hidalgo, C.P. 11810, Mexico City, Mexico
| | - Salvador Embarcadero-Jiménez
- Instituto Mexicano del Petróleo, Eje Central Lázaro Cárdenas 152, Col. San Bartolo Atepehuacan, 07730, Mexico City, Mexico
| | - Paulina Estrada de Los Santos
- Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prolongación Carpio y Plan de Ayala S/N, Col. Santo Tomás, Alcaldía Miguel Hidalgo, C.P. 11340, Mexico City, Mexico
| | - En Tao Wang
- Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prolongación Carpio y Plan de Ayala S/N, Col. Santo Tomás, Alcaldía Miguel Hidalgo, C.P. 11340, Mexico City, Mexico
| | - María Soledad Vásquez-Murrieta
- Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prolongación Carpio y Plan de Ayala S/N, Col. Santo Tomás, Alcaldía Miguel Hidalgo, C.P. 11340, Mexico City, Mexico.
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The rhizosphere of Sulla spinosissima growing in abandoned mining soils is a reservoir of heavy metals tolerant plant growth-promoting rhizobacteria. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2022. [DOI: 10.1016/j.bcab.2021.102236] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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Ke T, Guo G, Liu J, Zhang C, Tao Y, Wang P, Xu Y, Chen L. Improvement of the Cu and Cd phytostabilization efficiency of perennial ryegrass through the inoculation of three metal-resistant PGPR strains. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 271:116314. [PMID: 33360656 DOI: 10.1016/j.envpol.2020.116314] [Citation(s) in RCA: 58] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2020] [Revised: 12/01/2020] [Accepted: 12/13/2020] [Indexed: 05/08/2023]
Abstract
To explore a novel strategy for the remediation of soils polluted with Cu and Cd, three strains of plant-growth-promoting rhizobacteria (PGPRs) isolated from contaminated mines and two grass species (perennial ryegrass and tall fescue) were selected in this study. The performance of PGPR strains in metal adsorption, maintaining promotion traits under stress, and ameliorating phytostabilization potential was evaluated. Cd2+ exerted a stronger deleterious effect on microbial growth than Cu2+, but the opposite occurred for grass seedlings. Adsorption experiment showed that the growing PGPR strains were able to immobilize maximum 79.49% Cu and 81.35% Cd owing to biosorption or bioaccumulation. The strains exhibited the ability to secrete indole-3-acetic acid (IAA) and dissolve phosphorus in the absence and presence of metals, and IAA production was even enhanced in the presence of low Cu2+ (5 mg L-1). However, the siderophore-producing ability of the isolates was strongly suppressed under Cu and Cd exposure. Ryegrass was further selected for pot experiments owing to its higher germination rate and tolerance under Cu and Cd stress than fescue. Pot-experiment results revealed that PGPR addition significantly increased the shoot and root biomasses of ryegrass by 11.49%-44.50% and 43.53%-90.29% in soil co-contaminated with 800 mg Cu kg-1 and 30 mg Cd kg-1, respectively. Metal uptake and translocation in inoculated ryegrass significantly decreased owing to the reduced diethylenetriamine pentaacetic acid-extractable metal content and increased residual metal-fraction percentage mediated by PGPR. Interestingly, stress mitigation was observed in these inoculated plants; in particular, their malondialdehyde content and superoxide dismutase activity were even significantly lower than those of ryegrass under normal conditions. Therefore, PGPR could be a promising option to enhance the phytostabilization efficiency of Cu and Cd in heavily polluted soils.
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Affiliation(s)
- Tan Ke
- School of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass Resource Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, PR China
| | - Guangyu Guo
- School of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass Resource Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, PR China
| | - Junrong Liu
- School of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass Resource Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, PR China
| | - Chao Zhang
- School of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass Resource Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, PR China
| | - Yue Tao
- School of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass Resource Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, PR China
| | - Panpan Wang
- School of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass Resource Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, PR China
| | - Yanhong Xu
- National Central City Research Institute, Zhengzhou Normal University, Zhengzhou, 450044, PR China
| | - Lanzhou Chen
- School of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass Resource Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, PR China.
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Ke T, Zhang J, Tao Y, Zhang C, Zhang Y, Xu Y, Chen L. Individual and combined application of Cu-tolerant Bacillus spp. enhance the Cu phytoextraction efficiency of perennial ryegrass. CHEMOSPHERE 2021; 263:127952. [PMID: 32828058 DOI: 10.1016/j.chemosphere.2020.127952] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Revised: 07/30/2020] [Accepted: 08/08/2020] [Indexed: 05/27/2023]
Abstract
Forage grasses have recently received a remarkable amount of attention as promising candidates for decontaminating metal-polluted soils, but this strategy is time-consuming and inefficient. The present study aimed to address the beneficial effects of screened plant growth-promoting rhizobacteria (PGPR) strains Bacillus sp. EhS5 and EhS7 on perennial ryegrass and tall fescue. Single or combined inoculation considerably increased the biomass yield and Cu content of inoculated ryegrass compared with uninoculated plants, thereby enhancing the extraction efficiency at different Cu contamination levels. Bioaugmentation did not show a positive impact on the improvement of fescue's phytoextraction efficiency. Principal component analysis (PCA) and Pearson correlation coefficient results identified root development and photosynthesis as the key variables influencing ryegrass biomass. Antioxidant activities and Cu bioavailability are the key variables influencing Cu accumulation. The inoculated ryegrass showed improved photosynthetic status as the photosystem II system efficiency parameters increased and energy dissipation in the form of heat (DIo/RC) decreased with the help of PGPR. The root length, diameter, surface area, and forks of inoculated ryegrass increased remarkably. The levels of scavengers of reactive oxygen species were enhanced in these plants. Moreover, PGPR significantly increased soil Cu bioavailability by secreting siderophores and organic acid and by increasing soil organic carbon content. Dual inoculation showed better results than individual inoculation in improving ryegrass growth and Cu translocation under high Cu contamination level according to PCA. This study systematically explored the effects and mechanisms of the Bacillus-ryegrass combined remediation and provided a novel method for cleaning Cu-contaminated sites.
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Affiliation(s)
- Tan Ke
- School of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass Resource Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, PR China
| | - Jin Zhang
- School of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass Resource Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, PR China
| | - Yue Tao
- School of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass Resource Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, PR China
| | - Chao Zhang
- School of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass Resource Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, PR China
| | - Yurui Zhang
- School of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass Resource Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, PR China
| | - Yanhong Xu
- National Central City Research Institute, Zhengzhou Normal University, Zhengzhou, 450044, PR China
| | - Lanzhou Chen
- School of Resource & Environmental Sciences, Hubei Key Laboratory of Biomass Resource Chemistry and Environmental Biotechnology, Hubei Research Center of Environment Remediation Technology, Wuhan University, Wuhan, 430079, PR China.
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Ishizawa H, Ogata Y, Hachiya Y, Tokura KI, Kuroda M, Inoue D, Toyama T, Tanaka Y, Mori K, Morikawa M, Ike M. Enhanced biomass production and nutrient removal capacity of duckweed via two-step cultivation process with a plant growth-promoting bacterium, Acinetobacter calcoaceticus P23. CHEMOSPHERE 2020; 238:124682. [PMID: 31524619 DOI: 10.1016/j.chemosphere.2019.124682] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Revised: 08/14/2019] [Accepted: 08/25/2019] [Indexed: 05/27/2023]
Abstract
Plant growth-promoting bacteria (PGPB) are considered a promising tool to improve biomass production and water remediation by the aquatic plant, duckweed; however, no effective methodology is available to utilize PGPB in large hydroponic systems. In this study, we proposed a two-step cultivation process, which comprised of a "colonization step" and a "mass cultivation step," and examined its efficacy in both bucket-scale and flask-scale cultivation experiments. We showed that in the outdoor bucket-scale experiments using three kinds of environmental water, plants cultured through the two-step cultivation method with the PGPB strain, Acinetobacter calcoaceticus P23, yielded 1.9 to 2.3 times more biomass than the control (without PGPB inoculation). The greater nitrogen and phosphorus removals compared to control were also attained, indicating that this strategy is useful for accelerating nutrient removal by duckweed. Flask-scale experiments using non-sterile pond water revealed that inoculation of strain P23 altered duckweed surface microbial community structures, and the beneficial effects of the inoculated strain P23 could last for 5-10 d. The loss of the duckweed growth-promoting effect was noticeable when the colonization of strain P23 decreased in the plant. These observations suggest that the stable colonization of the plant with PGPB is the key for maintaining the accelerated duckweed growth and nutrient removal in this cultivation method. Overall, our results suggest the possibility of an improved duckweed production using a two-step cultivation process with PGPB.
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Affiliation(s)
- Hidehiro Ishizawa
- Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
| | - Yuka Ogata
- Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
| | - Yoshiyuki Hachiya
- Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
| | - Ko-Ichiro Tokura
- Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
| | - Masashi Kuroda
- Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
| | - Daisuke Inoue
- Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
| | - Tadashi Toyama
- Graduate Faculty of Interdisciplinary Research, University of Yamanashi, 4-3-11 Takeda, Kofu, Yamanashi, 400-8511, Japan
| | - Yasuhiro Tanaka
- Graduate Faculty of Interdisciplinary Research, University of Yamanashi, 4-3-11 Takeda, Kofu, Yamanashi, 400-8511, Japan
| | - Kazuhiro Mori
- Graduate Faculty of Interdisciplinary Research, University of Yamanashi, 4-3-11 Takeda, Kofu, Yamanashi, 400-8511, Japan
| | - Masaaki Morikawa
- Division of Biosphere Science, Graduate School of Environmental Science, Hokkaido University, Kita-10 Nishi-5, Kita-ku, Sapporo, 060-0810, Japan
| | - Michihiko Ike
- Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan.
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Toyama T, Hanaoka T, Yamada K, Suzuki K, Tanaka Y, Morikawa M, Mori K. Enhanced production of biomass and lipids by Euglena gracilis via co-culturing with a microalga growth-promoting bacterium, Emticicia sp. EG3. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:205. [PMID: 31695747 PMCID: PMC6822413 DOI: 10.1186/s13068-019-1544-2] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2019] [Accepted: 08/17/2019] [Indexed: 05/03/2023]
Abstract
BACKGROUND Euglena gracilis, a unicellular flagellated microalga, is regarded as one of the most promising species as microalgal feedstock for biofuels. Its lipids (mainly wax esters) are suitable for biodiesel and jet fuel. Culture of E. gracilis using wastewater effluent will improve the economics of E. gracilis biofuel production. Enhancement of the productivity of E. gracilis biomass is critical to creating a highly efficient biofuels production system. Certain bacteria have been found to promote microalgal growth by creating a favorable microenvironment. These bacteria have been characterized as microalgae growth-promoting bacteria (MGPB). Co-culture of microalgae with MGPB might offer an effective strategy to enhance microalgal biomass production in wastewater effluent culture systems. However, no MGPB has been identified to enhance the growth of E. gracilis. The objectives of this study were, therefore, to isolate and characterize the MGPB effective for E. gracilis and to demonstrate that the isolated MGPB indeed enhances the production of biomass and lipids by E. gracilis in wastewater effluent culture system. RESULTS A bacterium, Emticicia sp. EG3, which is capable of promoting the growth of microalga E. gracilis, was isolated from an E. gracilis-municipal wastewater effluent culture. Biomass production rate of E. gracilis was enhanced 3.5-fold and 3.1-fold by EG3 in the co-culture system using a medium of heat-sterilized and non-sterilized wastewater effluent, respectively, compared to growth in the same effluent culture but without EG3. Two-step culture system was examined as follows: E. gracilis was cultured with or without EG3 in wastewater effluent in the first step and was further grown in wastewater effluent in the second step. Production yields of biomass and lipids by E. gracilis were enhanced 3.2-fold and 2.9-fold, respectively, in the second step of the system in which E. gracilis was co-cultured with EG3 in the first step. CONCLUSION Emticicia sp. EG3 is the first MGPB for E. gracilis. Growth-promoting bacteria such as EG3 will be promising agents for enhancing E. gracilis biomass/biofuel productivities.
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Affiliation(s)
- Tadashi Toyama
- Graduate Faculty of Interdisciplinary Research, University of Yamanashi, 4-3-11 Takeda, Kofu, Yamanashi 400-8511 Japan
| | - Tsubasa Hanaoka
- Integrated Graduate School of Medicine, Engineering, and Agricultural Sciences, University of Yamanashi, 4-3-11 Takeda, Kofu, Yamanashi 400-8511 Japan
| | - Koji Yamada
- Euglena Co., Ltd., 5-29-11 Shiba Minato-ku, Tokyo, 108-0014 Japan
- Microalgae Production Control Technology Laboratory, RIKEN, 1-7-22, Suehiro, Tsurumi, Yookohama, Kanagawa 230-0045 Japan
| | - Kengo Suzuki
- Euglena Co., Ltd., 5-29-11 Shiba Minato-ku, Tokyo, 108-0014 Japan
- Microalgae Production Control Technology Laboratory, RIKEN, 1-7-22, Suehiro, Tsurumi, Yookohama, Kanagawa 230-0045 Japan
| | - Yasuhiro Tanaka
- Graduate Faculty of Interdisciplinary Research, University of Yamanashi, 4-3-11 Takeda, Kofu, Yamanashi 400-8511 Japan
| | - Masaaki Morikawa
- Division of Biosphere Science, Graduate School of Environmental Science, Hokkaido University, Kita-10 Nishi-5, Kita-ku, Sapporo, 060-0810 Japan
| | - Kazuhiro Mori
- Graduate Faculty of Interdisciplinary Research, University of Yamanashi, 4-3-11 Takeda, Kofu, Yamanashi 400-8511 Japan
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Enhanced Arsenic Tolerance in Triticum aestivum Inoculated with Arsenic-Resistant and Plant Growth Promoter Microorganisms from a Heavy Metal-Polluted Soil. Microorganisms 2019; 7:microorganisms7090348. [PMID: 31547348 PMCID: PMC6780836 DOI: 10.3390/microorganisms7090348] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2019] [Revised: 09/06/2019] [Accepted: 09/07/2019] [Indexed: 12/16/2022] Open
Abstract
In soils multi-contaminated with heavy metal and metalloids, the establishment of plant species is often hampered due to toxicity. This may be overcome through the inoculation of beneficial soil microorganisms. In this study, two arsenic-resistant bacterial isolates, classified as Pseudomonas gessardii and Brevundimonas intermedia, and two arsenic-resistant fungi, classified as Fimetariella rabenhortii and Hormonema viticola, were isolated from contaminated soil from the Puchuncaví valley (Chile). Their ability to produce indoleacetic acid and siderophores and mediate phosphate solubilization as plant growth-promoting properties were evaluated, as well as levels of arsenic resistance. A real time PCR applied to Triticum aestivum that grew in soil inoculated with the bacterial and fungal isolates was performed to observe differences in the relative expression of heavy metal stress defense genes. The minimum inhibitory concentration of the bacterial strains to arsenate was up to 7000 mg·L−1 and that of the fungal strains was up to 2500 mg·L−1. P. gessardi was able to produce siderophores and solubilize phosphate; meanwhile, B. intermedia and both fungi produced indoleacetic acid. Plant dry biomass was increased and the relative expression of plant metallothionein, superoxide dismutase, ascorbate peroxidase and phytochelatin synthase genes were overexpressed when P. gessardii plus B. intermedia were inoculated.
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Metataxonomics of Tunisian phosphogypsum based on five bioinformatics pipelines: Insights for bioremediation. Genomics 2019; 112:981-989. [PMID: 31220587 DOI: 10.1016/j.ygeno.2019.06.014] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2019] [Accepted: 06/15/2019] [Indexed: 11/23/2022]
Abstract
Phosphogypsum (PG) is an acidic by-product from the phosphate fertilizer industry and it is characterized by a low nutrient availability and the presence of radionuclides and heavy metals which pose a serious problem in its management. Here, we have applied Illumina MiSeq sequencing technology and five bioinformatics pipelines to explore the phylogenetic communities in Tunisian PG. Taking One Codex as a reference method, we present the results of 16S-rDNA-gene-based metataxonomics abundances with four other alternative bioinformatics pipelines (MetaGenome Rapid Annotation using Subsystem Technology (MG-RAST), mothur, MICrobial Community Analysis (MICCA) and Quantitative Insights into Microbial Ecology (QIIME)), when analyzing the Tunisian PG. Importantly, based on 16S rDNA datasets, the functional capabilities of microbial communities of PG were deciphered. They suggested the presence of PG autochthonous bacteria valorizable into (1) removal of radioactive elements and toxic heavy metals, (2) promotion of plant growth, (3) oxidation and (4) reduction of sulfate. These bacteria can be explored further for applications in the bioremediation of by-products, like PG, by different processes.
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Hanaka A, Nowak A, Plak A, Dresler S, Ozimek E, Jaroszuk-Ściseł J, Wójciak-Kosior M, Sowa I. Bacterial Isolate Inhabiting Spitsbergen Soil Modifies the Physiological Response of Phaseolus coccineus in Control Conditions and under Exogenous Application of Methyl Jasmonate and Copper Excess. Int J Mol Sci 2019; 20:E1909. [PMID: 30999692 PMCID: PMC6514558 DOI: 10.3390/ijms20081909] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Revised: 04/09/2019] [Accepted: 04/15/2019] [Indexed: 11/16/2022] Open
Abstract
The aim of the study was to demonstrate the potential of the promotion and regulation of plant physiology and growth under control and copper stress conditions, and the impact of the exogenous application of methyl jasmonate on this potential. Runner bean plants were treated with methyl jasmonate (1 or 10 µM) (J; J1 or J10) and Cu (50 µM), and inoculated with a bacterial isolate (S17) originating from Spitsbergen soil, and identified as Pseudomonas luteola using the analytical profile index (API) test. Above- and under-ground plant parts were analyzed. The growth parameters; the concentration of the photosynthetic pigments, elements, flavonoids (FLAVO), phenolics (TPC), allantoin (ALLA), and low molecular weight organic acids (LMWOAs); the activity of antioxidant enzymes and enzymes of resistance induction pathways (e.g., superoxide dismutase (SOD), catalase (CAT), ascorbate (APX) and guaiacol (GPX) peroxidase, glucanase (GLU), and phenylalanine (PAL) and tyrosine ammonia-lyase (TAL)), and the antioxidant capacity (AC) were studied. The leaves exhibited substantially higher ALLA and LMWOA concentrations as well as PAL and TAL activities, whereas the roots mostly had higher activities for a majority of the enzymes tested (i.e., SOD, CAT, APX, GPX, and GLU). The inoculation with S17 mitigated the effect of the Cu stress. Under the Cu stress and in the presence of J10, isolate S17 caused an elevation of the shoot fresh weight, K concentration, and TAL activity in the leaves, and APX and GPX (also at J1) activities in the roots. In the absence of Cu, isolate S17 increased the root length and the shoot-to-root ratio, but without statistical significance. In these conditions, S17 contributed to a 236% and 34% enhancement of P and Mn, respectively, in the roots, and a 19% rise of N in the leaves. Under the Cu stress, S17 caused a significant increase in FLAVO and TPC in the leaves. Similarly, the levels of FLAVO, TPC, and AC were enhanced after inoculation with Cu and J1. Regardless of the presence of J, inoculation at Cu excess caused a reduction of SOD and CAT activities, and an elevation of GPX. The effects of inoculation were associated with the application of Cu and J, which modified plant response mainly in a concentration-dependent manner (e.g., PAL, TAL, and LMWOA levels). The conducted studies demonstrated the potential for isolate S17 in the promotion of plant growth.
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Affiliation(s)
- Agnieszka Hanaka
- Department of Plant Physiology, Maria Curie-Skłodowska University, Akademicka St. 19, 20-033 Lublin, Poland.
| | - Artur Nowak
- Department of Environmental Microbiology, Maria Curie-Skłodowska University, Akademicka St. 19, 20-033 Lublin, Poland.
| | - Andrzej Plak
- Department of Geology and Soil Science, Maria Curie-Skłodowska University, Kraśnicka Ave. 2cd, 20-718 Lublin, Poland.
| | - Sławomir Dresler
- Department of Plant Physiology, Maria Curie-Skłodowska University, Akademicka St. 19, 20-033 Lublin, Poland.
| | - Ewa Ozimek
- Department of Environmental Microbiology, Maria Curie-Skłodowska University, Akademicka St. 19, 20-033 Lublin, Poland.
| | - Jolanta Jaroszuk-Ściseł
- Department of Environmental Microbiology, Maria Curie-Skłodowska University, Akademicka St. 19, 20-033 Lublin, Poland.
| | - Magdalena Wójciak-Kosior
- Department of Analytical Chemistry, Medical University of Lublin, Chodźki 4a, 20-093 Lublin, Poland.
| | - Ireneusz Sowa
- Department of Analytical Chemistry, Medical University of Lublin, Chodźki 4a, 20-093 Lublin, Poland.
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Luziatelli F, Ficca AG, Colla G, Baldassarre Švecová E, Ruzzi M. Foliar Application of Vegetal-Derived Bioactive Compounds Stimulates the Growth of Beneficial Bacteria and Enhances Microbiome Biodiversity in Lettuce. FRONTIERS IN PLANT SCIENCE 2019; 10:60. [PMID: 30804958 PMCID: PMC6370708 DOI: 10.3389/fpls.2019.00060] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2018] [Accepted: 01/16/2019] [Indexed: 05/02/2023]
Abstract
Many studies on plant biostimulants and organic fertilizers have been focused on the ability of these products to increase crop productivity and ameliorate crop tolerance to abiotic stresses. However, little information is available on their effect on plant microbiota, whereas it is well known that microorganisms associated with plant play crucial roles on the health and productivity of their host. The aim of this study was to evaluate the effect of a vegetal-derived protein hydrolysate (PH), a vegetal-derived PH enriched with copper (Cu-PH), and a tropical plant extract enriched with micronutrients (PE) on shoot growth and the epiphytic bacterial population of lettuce plants and the ability of these products to enhance the growth of beneficial or harmful bacteria. The three plant-derived products enhanced shoot biomass of lettuce plants indicating a biostimulant effect of the products. Data obtained using culture-independent (Terminal Restriction Fragment Length Polymorphism and Next Generation Sequencing) and culture-dependent approaches indicated that foliar application of commercial products altered the composition of the microbial population and stimulated the growth of specific bacteria belonging to Pantoea, Pseudomonas, Acinetobacter, and Bacillus genus. Data presented in this work demonstrated that some of these strains exhibited potential plant growth-promoting properties and/or biocontrol activity against fungi and bacteria phytopathogens including Fusarium, Trichoderma, and Erwinia species. No indication of potential health risks associated to the enrichment of human or plant bacterial pathogens emerged by the analysis of the microbiota of treated and no-treated plants. Overall, the findings presented in this study indicate that the commercial organic-based products can enhance the growth of beneficial bacteria occurring in the plant microbiota and signals produced by these bacteria can act synergistically with the organic compounds to enhance plant growth and productivity.
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Affiliation(s)
- Francesca Luziatelli
- Department for Innovation in Biological, Agrofood and Forest Systems, University of Tuscia, Viterbo, Italy
| | - Anna Grazia Ficca
- Department for Innovation in Biological, Agrofood and Forest Systems, University of Tuscia, Viterbo, Italy
| | - Giuseppe Colla
- Department of Agriculture and Forest Sciences, University of Tuscia, Viterbo, Italy
| | | | - Maurizio Ruzzi
- Department for Innovation in Biological, Agrofood and Forest Systems, University of Tuscia, Viterbo, Italy
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Ishizawa H, Kuroda M, Inoue K, Inoue D, Morikawa M, Ike M. Colonization and Competition Dynamics of Plant Growth-Promoting/Inhibiting Bacteria in the Phytosphere of the Duckweed Lemna minor. MICROBIAL ECOLOGY 2019; 77:440-450. [PMID: 30603770 DOI: 10.1007/s00248-018-1306-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2018] [Accepted: 12/11/2018] [Indexed: 05/22/2023]
Abstract
Despite the considerable role of aquatic plant-associated bacteria in host plant growth and nutrient cycling in aquatic environments, the mode of their plant colonization has hardly been understood. This study examined the colonization and competition dynamics of a plant growth-promoting bacterium (PGPB) and two plant growth-inhibiting bacteria (PGIB) in the aquatic plant Lemna minor (common duckweed). When inoculated separately to L. minor, each bacterial strain quickly colonized at approximately 106 cells per milligram (plant fresh weight) and kept similar populations throughout the 7-day cultivation time. The results of two-membered co-inoculation assays revealed that the PGPB strain Aquitalea magnusonii H3 consistently competitively excluded the PGIB strain Acinetobacter ursingii M3, and strain H3 co-existed at almost 1:1 proportion with another PGIB strain, Asticcacaulis excentricus M6, regardless of the inoculation ratios (99:1-1:99) and inoculation order. We also found that A. magnusonii H3 exerted its growth-promoting effect over the negative effects of the two PGIB strains even when only a small amount was inoculated, probably due to its excellent competitive colonization ability. These experimental results demonstrate that there is a constant ecological equilibrium state involved in the bacterial colonization of aquatic plants.
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Affiliation(s)
- Hidehiro Ishizawa
- Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
| | - Masashi Kuroda
- Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
| | - Kanako Inoue
- Research Center for Ultra-High Voltage Electron Microscopy, Osaka University, 7-1 Mihogaoka, Osaka, Ibaraki, 567-0047, Japan
| | - Daisuke Inoue
- Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
| | - Masaaki Morikawa
- Division of Biosphere Science, Graduate School of Environmental Science, Hokkaido University, N10-W5, Kita-ku, Sapporo, 060-0810, Japan
| | - Michihiko Ike
- Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan.
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The persistence and performance of phosphate-solubilizing Gluconacetobacter liquefaciens qzr14 in a cucumber soil. 3 Biotech 2017; 7:294. [PMID: 28868221 DOI: 10.1007/s13205-017-0926-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2016] [Accepted: 08/22/2017] [Indexed: 10/19/2022] Open
Abstract
The persistence and performance of plant growth-promoting microorganisms (PGPMs) in soil are considered critical features for effectiveness, yet they are poorly understood. Here, we investigated the colonization and activity of a new PGPM, phosphate-solubilizing Gluconacetobacter liquefaciens qzr14, in a pot culture experiment using cucumber as test crop for 20 days. The number of G. liquefaciens and bacterial diversity in the rhizosphere and bulk soil were monitored by real-time PCR and DGGE, respectively. Soil phosphorus and cucumber biomass were also examined. G. liquefaciens qzr14 effectively colonized the rhizosphere soil (bacterial density ranging from 2.70 × 108 to 1.18 × 109 copies per gram dry soil). G. liquefaciens qzr14 inoculation had significantly positive effects on bacterial diversity (BD) of the rhizosphere and bulk soil and the ratio of soluble phosphorus to total phosphorus (SP/TP). The number of G. liquefaciens in the rhizosphere soil was significantly related to SP/TP and the BD of the rhizosphere and bulk soil. BD in rhizosphere soil was significantly related to SP/TP and BD in bulk soil. Based on the results of correlation analysis, we inferred that the introduced G. liquefaciens qzr14 effectively colonized the rhizosphere of cucumber, and then expanded its bacterial community by solubilizing soil phosphorus. The expanded bacterial communities might promote cucumber growth by some new functions.
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Toyama T, Kuroda M, Ogata Y, Hachiya Y, Quach A, Tokura K, Tanaka Y, Mori K, Morikawa M, Ike M. Enhanced biomass production of duckweeds by inoculating a plant growth-promoting bacterium, Acinetobacter calcoaceticus P23, in sterile medium and non-sterile environmental waters. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2017; 76:1418-1428. [PMID: 28953468 DOI: 10.2166/wst.2017.296] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Duckweed offers the promise of a co-benefit culture combining water purification with biomass production. Acinetobacter calcoaceticus P23 is a plant growth-promoting bacterium isolated from a duckweed, Lemna aequinoctialis. This study quantified its growth-promoting effect on three duckweeds (L. aoukikusa, L. minor, and Spirodela polyrhiza) in sterile Hoagland solution and evaluated its usefulness in duckweed culture under non-sterile conditions. P23 promoted growth of three duckweeds in sterile Hoagland solution at low to high nutrient concentrations (1.25-10 mg NO3-N/L and 0.25-2.0 mg PO4-P/L). It increased the biomass production of L. aequinoctialis 3.8-4.3-fold, of L. minor 2.3-3.3-fold, and of S. polyrhiza 1.4-1.5-fold after 7 days compared with noninoculated controls. P23 also increased the biomass production of L. minor 2.4-fold in pond water and 1.7-fold in secondary effluent of a sewage treatment plant under non-sterile conditions at laboratory-scale experiments. P23 rescued L. minor from growth inhibition caused by microorganisms indigenous to the pond water. The results demonstrate that the use of P23 in duckweed culture can improve the efficiency of duckweed biomass production, and a positive effect of P23 on duckweed-based wastewater treatment can be assumed.
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Affiliation(s)
- T Toyama
- Graduate Faculty of Interdisciplinary Research, University of Yamanashi, 4-3-11 Takeda, Kofu, Yamanashi 400-8511, Japan E-mail:
| | - M Kuroda
- Division of Sustainable Energy and Environmental Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan
| | - Y Ogata
- National Institute for Environmental Studies, 16-2 Onogawa, Tsukuba, Ibaraki 305-8506, Japan
| | - Y Hachiya
- Division of Sustainable Energy and Environmental Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan
| | - A Quach
- Division of Sustainable Energy and Environmental Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan
| | - K Tokura
- Division of Sustainable Energy and Environmental Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan
| | - Y Tanaka
- Graduate Faculty of Interdisciplinary Research, University of Yamanashi, 4-3-11 Takeda, Kofu, Yamanashi 400-8511, Japan E-mail:
| | - K Mori
- Graduate Faculty of Interdisciplinary Research, University of Yamanashi, 4-3-11 Takeda, Kofu, Yamanashi 400-8511, Japan E-mail:
| | - M Morikawa
- Division of Biosphere Science, Graduate School of Environmental Science, Hokkaido University, Kita-10 Nishi-5, Kita-ku, Sapporo 060-0810, Japan
| | - M Ike
- Division of Sustainable Energy and Environmental Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan
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Zornoza R, Gómez-Garrido M, Martínez-Martínez S, Gómez-López MD, Faz Á. Bioaugmentaton in Technosols created in abandoned pyritic tailings can contribute to enhance soil C sequestration and plant colonization. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 593-594:357-367. [PMID: 28346909 DOI: 10.1016/j.scitotenv.2017.03.154] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2017] [Revised: 03/16/2017] [Accepted: 03/16/2017] [Indexed: 06/06/2023]
Abstract
Creation of Technosols in combination with phytostabilization may be a sustainable strategy to minimize the environmental and human health hazards derived from mine tailings. Bioaugmentation can facilitate plant establishment and growth for efficient phytostabilization. In order to assess if bioaugmentation can increase soil quality and fertility, decrease metal(loid) mobility and accelerate plant colonization, a one-year field experiment was designed with creation of Technosols in two tailings ponds with different pH (acidic (AT) and neutral (NT)), with addition of marble waste (MaW) and two organic materials (pig manure (PM) and sewage sludge (SS), without or with inoculation of effective microorganisms (EM) at three rates. Results showed that MaW was the main factor responsible for maintaining pH ~7 in AT and ~8 in NT, decreasing salinity, and decreasing the soluble fraction of metals (70-99%). The soluble fraction of As decreased ~45% in AT, related to increases in pH up to neutrality, while increased ~90% in NT with PM due to pH>8 and higher content of organic compounds. The addition of PM and SS significantly increased soil organic C (SOC), nutrient contents and microbial biomass and activity in both tailings, being PM more effective. However, a positive priming effect was observed in NT with SS addition likely due to higher C/N ratio and lack of nutrients. There was a significant effect of EM rate on inorganic C, SOC, N, K and microbial biomass and activity, with higher values as rate increased. Vegetation richness and density directly increased with increasing EM rate. Multivariate analyses showed that the most important properties contributing to increase richness and plant density were microbial biomass and N. Thus, bioaugmentation contributed to soil C sequestration (as organic and inorganic C) and soil fertility, related to high soil microbial biomass and activity, which facilitated an effective colonization of vegetation.
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Affiliation(s)
- Raúl Zornoza
- Sustainable Use, Management, and Reclamation of Soil and Water Research Group, Technical School of Agricultural Engineering, Universidad Politécnica de Cartagena, Paseo Alfonso XIII, 48, 30203 Cartagena, Spain.
| | - Melisa Gómez-Garrido
- Sustainable Use, Management, and Reclamation of Soil and Water Research Group, Technical School of Agricultural Engineering, Universidad Politécnica de Cartagena, Paseo Alfonso XIII, 48, 30203 Cartagena, Spain
| | - Silvia Martínez-Martínez
- Sustainable Use, Management, and Reclamation of Soil and Water Research Group, Technical School of Agricultural Engineering, Universidad Politécnica de Cartagena, Paseo Alfonso XIII, 48, 30203 Cartagena, Spain
| | - María Dolores Gómez-López
- Sustainable Use, Management, and Reclamation of Soil and Water Research Group, Technical School of Agricultural Engineering, Universidad Politécnica de Cartagena, Paseo Alfonso XIII, 48, 30203 Cartagena, Spain
| | - Ángel Faz
- Sustainable Use, Management, and Reclamation of Soil and Water Research Group, Technical School of Agricultural Engineering, Universidad Politécnica de Cartagena, Paseo Alfonso XIII, 48, 30203 Cartagena, Spain
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Cornu JY, Huguenot D, Jézéquel K, Lollier M, Lebeau T. Bioremediation of copper-contaminated soils by bacteria. World J Microbiol Biotechnol 2017; 33:26. [PMID: 28044274 DOI: 10.1007/s11274-016-2191-4] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2016] [Accepted: 12/19/2016] [Indexed: 11/24/2022]
Abstract
Although copper (Cu) is an essential micronutrient for all living organisms, it can be toxic at low concentrations. Its beneficial effects are therefore only observed for a narrow range of concentrations. Anthropogenic activities such as fungicide spraying and mining have resulted in the Cu contamination of environmental compartments (soil, water and sediment) at levels sometimes exceeding the toxicity threshold. This review focuses on the bioremediation of copper-contaminated soils. The mechanisms by which microorganisms, and in particular bacteria, can mobilize or immobilize Cu in soils are described and the corresponding bioremediation strategies-of varying levels of maturity-are addressed: (i) bioleaching as a process for the ex situ recovery of Cu from Cu-bearing solids, (ii) bioimmobilization to limit the in situ leaching of Cu into groundwater and (iii) bioaugmentation-assisted phytoextraction as an innovative process for in situ enhancement of Cu removal from soil. For each application, the specific conditions required to achieve the desired effect and the practical methods for control of the microbial processes were specified.
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Affiliation(s)
- Jean-Yves Cornu
- ISPA, INRA, Bordeaux Sciences Agro, 33140, Villenave d'Ornon, France
| | - David Huguenot
- Université Paris-Est, Laboratoire Géomatériaux et Environnement (EA 4508), UPEM, 77454, Marne-la-Vallée, France
| | - Karine Jézéquel
- Université de Haute Alsace, EA 3991 LVBE (Laboratoire Vigne Biotechnologies et Environnement), Equipe Dépollution Biologique des Sols, 33 rue de Herrlisheim, BP 50568, 68008, Colmar cedex, France
| | - Marc Lollier
- Université de Haute Alsace, EA 3991 LVBE (Laboratoire Vigne Biotechnologies et Environnement), Equipe Dépollution Biologique des Sols, 33 rue de Herrlisheim, BP 50568, 68008, Colmar cedex, France
| | - Thierry Lebeau
- Université de Nantes, UMR 6112 LPG-Nantes (Laboratoire de Planétologie et Géodynamique de Nantes), 2 rue de la Houssinière, BP 92208, 44322, Nantes cedex 3, France.
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Ishizawa H, Kuroda M, Morikawa M, Ike M. Evaluation of environmental bacterial communities as a factor affecting the growth of duckweed Lemna minor. BIOTECHNOLOGY FOR BIOFUELS 2017; 10:62. [PMID: 28293292 PMCID: PMC5345205 DOI: 10.1186/s13068-017-0746-8] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2016] [Accepted: 02/28/2017] [Indexed: 05/10/2023]
Abstract
BACKGROUND Duckweed (family Lemnaceae) has recently been recognized as an ideal biomass feedstock for biofuel production due to its rapid growth and high starch content, which inspired interest in improving their productivity. Since microbes that co-exist with plants are known to have significant effects on their growth according to the previous studies for terrestrial plants, this study has attempted to understand the plant-microbial interactions of a duckweed, Lemna minor, focusing on the growth promotion/inhibition effects so as to assess the possibility of accelerated duckweed production by modifying co-existing bacterial community. RESULTS Co-cultivation of aseptic L. minor and bacterial communities collected from various aquatic environments resulted in changes in duckweed growth ranging from -24 to +14% compared to aseptic control. A number of bacterial strains were isolated from both growth-promoting and growth-inhibitory communities, and examined for their co-existing effects on duckweed growth. Irrespective of the source, each strain showed promotive, inhibitory, or neutral effects when individually co-cultured with L. minor. To further analyze the interactions among these bacterial strains in a community, binary combinations of promotive and inhibitory strains were co-cultured with aseptic L. minor, resulting in that combinations of promotive-promotive or inhibitory-inhibitory strains generally showed effects similar to those of individual strains. However, combinations of promotive-inhibitory strains tended to show inhibitory effects while only Aquitalea magnusonii H3 exerted its plant growth-promoting effect in all combinations tested. CONCLUSION Significant change in biomass production was observed when duckweed was co-cultivated with environmental bacterial communities. Promotive, neutral, and inhibitory bacteria in the community would synergistically determine the effects. The results indicate the possibility of improving duckweed biomass production via regulation of co-existing bacterial communities.
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Affiliation(s)
- Hidehiro Ishizawa
- Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871 Japan
| | - Masashi Kuroda
- Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871 Japan
| | - Masaaki Morikawa
- Division of Biosphere Science, Graduate School of Environmental Science, Hokkaido University, N10-W5, Kita-ku, Sapporo, 060-0810 Japan
| | - Michihiko Ike
- Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871 Japan
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Burges A, Epelde L, Benito G, Artetxe U, Becerril JM, Garbisu C. Enhancement of ecosystem services during endophyte-assisted aided phytostabilization of metal contaminated mine soil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2016; 562:480-492. [PMID: 0 DOI: 10.1016/j.scitotenv.2016.04.080] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2016] [Revised: 04/11/2016] [Accepted: 04/11/2016] [Indexed: 05/28/2023]
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20
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Assessing the effects of heavy metals in ACC deaminase and IAA production on plant growth-promoting bacteria. Microbiol Res 2016; 188-189:53-61. [DOI: 10.1016/j.micres.2016.05.001] [Citation(s) in RCA: 77] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2016] [Revised: 04/30/2016] [Accepted: 05/01/2016] [Indexed: 11/22/2022]
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21
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Loganathan P, Myung H, Muthusamy G, Lee KJ, Seralathan KK, Oh BT. Effect of heavy metals onacdSgene expression inHerbaspirilliumsp. GW103 isolated from rhizosphere soil. J Basic Microbiol 2015; 55:1232-8. [DOI: 10.1002/jobm.201500008] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2015] [Accepted: 04/06/2015] [Indexed: 11/10/2022]
Affiliation(s)
- Praburaman Loganathan
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences; Chonbuk National University; Iksan South Korea
| | - Hyun Myung
- Department of Ecology Landscape Architecture-Design, College of Environmental and Bioresource Sciences; Chonbuk National University; Iksan South Korea
| | - Govarthanan Muthusamy
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences; Chonbuk National University; Iksan South Korea
| | - Kui-Jae Lee
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences; Chonbuk National University; Iksan South Korea
- Plant Medical Research Center, College of Agricultural and Life Sciences; Chonbuk National University; Jeonju Jeonbuk South Korea
| | - Kamala-Kannan Seralathan
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences; Chonbuk National University; Iksan South Korea
| | - Byung-Taek Oh
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences; Chonbuk National University; Iksan South Korea
- Plant Medical Research Center, College of Agricultural and Life Sciences; Chonbuk National University; Jeonju Jeonbuk South Korea
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