Toxic responses of microorganisms to nickel exposure in farmland soil in the presence of earthworm (Eisenia fetida)

Long-term toxic effects of iron-based metal-organic framework nanopesticides on earthworm-soil microorganism interactions in the soil environment

With the widespread use of controlled-release nanopesticides in field conditions, the interactions between these nanopesticides and biological systems are complex and highly uncertain. The toxicity of iron-based metal organic frameworks (CF@MIL-101-SL) loaded with chlorfenapyr (CF) to terrestrial invertebrate earthworms in filter paper and soil environments and the potential mechanisms of interactions in the nanopesticide-earthworm-cornfield soil microorganism system were investigated for the first time. The results showed that CF@MIL-101-SL was more poisonous to earthworms in the contact filter paper test than suspension concentrate of CF (CF-SC), and conversely, CF@MIL-101-SL was less poisonous to earthworms in the soil test. In the soil environment, the CF@MIL-101-SL treatment reduced oxidative stress and the inhibition of detoxifying enzymes, and reduced tissue and cellular substructural damage in earthworms compared to the CF-SC treatment. Long-term treatment with CF@MIL-101-SL altered the composition and abundance of microbial communities with degradative functions in the earthworm intestine and soil and affected the soil nitrogen cycle by modulating the composition and abundance of nitrifying and denitrifying bacterial communities in the earthworm intestine and soil, confirming that soil microorganisms play an important role in reducing the toxicity of CF@MIL-101-SL to earthworms. In conclusion, this study provides new insights into the ecological risks of nanopesticides to soil organisms.

Effect and potential mechanisms of sludge-derived chromium, nickel, and lead on soil nitrification: Implications for sustainable land utilization of digested sludge

Increasing occurrence of heavy metals (HMs) in sewage sludge threatens its widespread land utilization in China due to its potential impact on nutrient cycling in soil, requiring a better understanding of HM-induced impacts on nitrification. Herein, lab-scale experiments were conducted over 185-day, evaluating the effect of sludge-derived chromium (Cr3+), nickel (Ni2+), and lead (Pb2+) on soil nitrification at different concentrations. Quantitative polymerase chain reaction and linear regression results revealed an inhibitory sequence of gene abundance by HMs' labile fraction: ammonia-oxidizing bacteria (AOB)-ammonia monooxygenase (amoA)> nitrite oxidoreductase subunit alpha (nxrA)> nitrite oxidoreductase subunit beta (nxrB). The toxicity of HMs' incremental labile fraction decreased in the order of Ni2+>Cr3+>Pb2+, with respective threshold values of 5.01, 24.03 and 38.42 mg·kg-1. Furthermore, extending incubation time reduced HMs inhibition on ammonia oxidation, mainly related to their fraction bound to carbonate minerals. Random Forest analysis, variation partitioning analysis, and Mantel test indicated that soil physicochemical properties primarily affected nitrification genes, especially in the test of Cr3+ on AOB-amoA, nxrA, nxrB, Ni2+ for complete ammonia-oxidizing bacteria-amoA, and Pb2+ for nxrA and nxrB. These findings underline the importance of labile HMs fractions and soil physicochemical properties to nitrification, guiding the establishment of HM control standards for sludge utilization.

Microbiological status of natural and anthropogenic soils of the Taganrog Bay coast at different levels of combined pollution with heavy metals and PAHs

The effect of heavy metals (HMs) and polycyclic aromatic hydrocarbons (PAHs) pollution on the microbiological status of soils on the coast of the Taganrog Bay and adjacent areas was studied. The content of total and exchangeable forms of HMs, the content of 16 priority PAHs and the abundance of several groups of culturable microorganisms was determined, namely copiotrophic, prototrophic, aerobic spore-forming bacteria, actinomycetes, molds and yeasts. The content of total and exchangeable forms of HMs in urban coastal soils in industrial zone significantly exceeded that in non-urban soils. The maximum concentrations of total forms of Mn, Cr, Ni, Cu, Zn, Pb and Cd are 1821, 871, 143, 89, 1390, 317 and 10 mg/kg, respectively. The median value of the total content of 16 PAHs in urban soils is 3 times higher than in the soils of natural areas and reached 4309 ng/g. The lowest numbers of copiotrophic bacteria, prototrophic bacteria and aerobic spore-forming bacteria were found in the soils of industrial zone: 6.8, 13.8 and 0.63 million CFU g-1 dry soil, respectively. The largest numbers of copiotrophic bacteria, prototrophic bacteria and aerobic spore-forming bacteria were recorded in the soils of natural areas-72.5, 136 and 5.73 million CFU g-1 dry soil, respectively. It was found that the abundance of copiotrophs, prototrophs, and aerobic spore-forming bacteria is more affected by the urbanization of coastal soils including the pollution of HMs and PAHs. Other groups of microorganisms (actinomycetes, molds and yeasts) turned out to be more resistant to anthropogenic factors.

Co-application of citric acid and Nocardiopsis sp. strain RA07 enhances phytoremediation potentiality of Sorghum bicolor L

This study investigated the combined effects of citric acid (CA) and Nocardiopsis sp. RA07 on the phytoremediation potential of lead (Pb)- and copper (Cu)-contaminated soils by Sorghum bicolor L. The strain RA07 was able to tolerate Pb and Cu, and exhibited plant growth-promoting features like siderophore production, indole-3-acetic acid (IAA) synthesis, 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity and phosphate solubilization. The combined application of CA and strain RA07 significantly increased S. bicolor growth, chlorophyll content and antioxidant enzymatic activity, and decreased oxidative stress (hydrogen peroxide and malondialdehyde content) under Pb and Cu stress circumstances as compared to individual treatments (i.e., CA and strain RA07). Furthermore, the combined application of CA and RA07 significantly enhanced S. bicolor ability to accumulate Pb and Cu by 64.41% and 60.71% in the root and 188.39% and 125.56% in the shoot, respectively, as compared to the corresponding uninoculated plants. Our results indicate that inoculation of Nocardiopsis sp. together with CA could be a useful practical approach to mitigate Pb and Cu stress on plant growth and increase the effectiveness of phytoremediation in Pb- and Cu-polluted soils.

Plant growth-promoting bacteria in phytoremediation of metal-polluted soils: Current knowledge and future directions

Soil metal contamination is a major concern due to the ever-rising number of areas afflicted worldwide and the detrimental effects of metals to the environment and human health. Due to their non-biodegradability and toxicity, it is paramount to prevent further metal contamination and remediate the thousands of contaminated sites across the planet. Yet, conventional reclamation based on physical and chemical methods is often expensive, impractical, and triggers secondary pollution issues. Hence, microbe-aided phytoremediation has been gaining significant traction due to its environment-friendly character, cost-effectiveness, and the breakthroughs achieved during the past few decades. Microorganisms are an essential part of natural ecosystems and play a crucial role in their restoration. Indeed, plant-microbe associations in metal-polluted soils are pivotal for plants to tolerate metal toxicity and thrive in these harsh environments. Therefore, improving the understanding of this intricate relationship is invaluable for boosting phytoremediation. In this review, we focus on the potential of plant growth promoting bacteria (PGPB) for enhancing phytoremediation of metal-polluted soils. We discuss the mechanisms employed by microbes to promote plant growth and assist the removal or immobilization of metals in soil, thereby enhancing phytoextraction and phytostabilization, respectively. Microbe-mediated metal removal and detoxification through processes entailing adsorption, chelation, transformation, and precipitation, to list but a few, are also critically examined. Moreover, this work covers the direct and indirect mechanisms used by PGPB to facilitate plant acquisition of nutrients like nitrogen and phosphorus, supply and regulate phytohormones, and exert control over antagonistic microorganisms. Lastly, we provide an outlook on the future directions of microbe-aided phytoremediation and phytomining. Clearly, to fully validate and comprehend the potential of PGPB-aided phytoremediation, a considerable shift from bench-scale to field research is necessary. What's more, it is envisaged that recent advancements in genetic engineering may soon help furthering the efficiency of microbe-assisted phytoremediation.

Plants-Microorganisms-Based Bioremediation for Heavy Metal Cleanup: Recent Developments, Phytoremediation Techniques, Regulation Mechanisms, and Molecular Responses

Rapid industrialization, mine tailings runoff, and agricultural activities are often detrimental to soil health and can distribute hazardous metal(loid)s into the soil environment, with harmful effects on human and ecosystem health. Plants and their associated microbes can be deployed to clean up and prevent environmental pollution. This green technology has emerged as one of the most attractive and acceptable practices for using natural processes to break down organic contaminants or accumulate and stabilize metal pollutants by acting as filters or traps. This review explores the interactions between plants, their associated microbiomes, and the environment, and discusses how they shape the assembly of plant-associated microbial communities and modulate metal(loid)s remediation. Here, we also overview microbe-heavy-metal(loid)s interactions and discuss microbial bioremediation and plants with advanced phytoremediation properties approaches that have been successfully used, as well as their associated biological processes. We conclude by providing insights into the underlying remediation strategies' mechanisms, key challenges, and future directions for the remediation of metal(loid)s-polluted agricultural soils with environmentally friendly techniques.

Bioaccumulation, elimination and metabolism in earthworms and microbial indices responses after exposure to decabromodiphenyl ethane in a soil-earthworm-microbe system

As a novel brominated flame retardant (NBFR), decabromodiphenyl ethane (DBDPE) has been poorly understood for the environmental fate and toxicity in terrestrial invertebrates. For the first time, the bioaccumulation, elimination, metabolism and detoxification of DBDPE in earthworms as well as its potential impacts on soil microbes were investigated. The results showed much higher DBDPE concentrations in casts than in earthworms. The bioaccumulation factor (BAF) and elimination rate constant (k_e) values were 0.028-0.213 (gdw, worm/gdw, soil) and 0.323-0.452 (day^-1), respectively. The detoxifying enzymes (CYP450 and GST) could be induced by DBDPE within the range of exposure dosage, and the activities were significantly increased at 21 d (p < 0.05). The results were identified by GC-ECNI-MS, and it showed that at least eleven unknown peaks were separately observed in the earthworms, which were the biotransformation products of DBDPE in earthworms. Additionally, the damages, including skin shrinkage, setae impairment, and intercellular vacuolization, were clearly observed by SEM/TEM. Based on these data, DBDPE could accumulate in earthworms, yet, with low bioaccumulation ability. Moreover, DBDPE exposure resulted in minimal harmful impacts on microbial activities including microbial biomass C (MBC), Microbial basal respiration (MBR), Urease (US) activity and fluorescein diacetate hydrolase (FDA) activity (p < 0.05). Our findings would provide some essential information for interpreting the ecological risks of DBDPE in soil.

Remediation of copper-contaminated soils using Tagetes patula L., earthworms and arbuscular mycorrhizal fungi

Arbuscular mycorrhizal fungi (AMF) and earthworms have potential uses in the bioremediation of contaminated soils. In recent years, heavy metal-contaminated sites have been remediated by adding plants and AMF or earthworms to the soil. However, there are few studies on remediation using combinations of plants, animals, and microbes, especially for the remediation of Cu-contaminated soil. The present study investigated the separate and combined effects of AMF and earthworms on Cu-contaminated soil in which Tagetes patula L. was grown. The results show that the combined application of AMF and earthworms markedly increased the biomass of plant shoots and roots by more than 100%. It also increased Cu extraction by T. patula by 270%. The combined treatment was effective in increasing the CEC, contents of OM, and available Cu, P and K, but reduced the soil pH. Furthermore, the combined treatment significantly increased the abundance and diversity of the soil microbial community. In particular, the abundances of the bacteria Bacteroides, Proteobacteria, and Actinobacteria were increased, with the genera Flavobacterium, Pedobacter, Algoriphagus, Gaetbulibacter, Pseudomonas, Luteimonas, and Arthrobacter dominating. Meanwhile, the abundance of the fungus Zygomycota was increased, with Mortierella dominating. Moreover, inoculation with earthworms greatly improved the structure of the soil microbial community.

Bioremediation of Cd-contaminated soil by earthworms (Eisenia fetida): Enhancement with EDTA and bean dregs

The remediation of cadmium (Cd) contaminated soil has become a global problem due to its toxicity to living organisms. In this study, earthworm (Eisenia fetida) alone or combined with EDTA or bean dregs were used for Cd removal from soils. The total and available Cd in soils, soil physicochemical and biological (soil enzyme) properties, Cd accumulation in the earthworm and its antioxidant responses towards Cd, were determined during the 35 days of soil incubation experiment. Our results showed that earthworms were capable of removing Cd from soils, and the remediation process was accelerated by both EDTA and bean dregs. By translocation of Cd from soils, the content of Cd in earthworm steadily increased with the exposure time to 8.11, 12.80, and 9.26 mg kg^-1 on day 35 for T2 (earthworm alone), T3 (EDTA enhancement), and T4 (bean dregs enhancement), respectively. Consequently, a great reduction in the Cd contents in soils was achieved in T3 (36.53%) and T4 (30.8%) compared with T2 (28.95%). The concentrations of water/DTPA extractable Cd were also reduced, indicating the low Cd mobility after amendment. Finally, the soil became more fertile and active after wermi-remediation. The soil pH, EC, NO₃^--N, available P, and K contents increased, while soil SOM, DOC, and NH₄⁺-N contents were decreased. There were higher soil enzyme activities (including acid phosphatase activity, β-glucosidase activity, and urease activity) among treatments with earthworms. Additionally, the operational taxonomic units (OTUs) increased by 100-150 units, and the higher chao1 and Shannon indexes indicated the enhanced microbial community after wermi-remediation, especially among treatment with EDTA and bean dregs. Therefore, we concluded that earthworms, alone or combined with EDTA and bean dregs, are feasible for the remediation of Cd-contaminated soil.

Exploring the bioavailability of nickel in a soil system: Physiological and histopathological toxicity study to the earthworms (Eisenia fetida)

Nickel (Ni) contamination in soils, at high concentrations, is considered to be very common. Knowledge of the total content of Ni is frequently insufficient to estimate environmental risk. Our explored findings showed that the earthworms adding reduced the available Ni, along with the superior performance of HCl than CaCl₂. The bioaccumulation of Ni in earthworms was aggravated with increasing Ni dosage and exposure time. Bioaccumulation factor was significantly correlated with the extractable Ni, which was the most suitable predicting the variations of Ni bioavailability. LC₅₀ of earthworms on 7 and 14 days were 1202.444 mg kg^-1 and 1069.324 mg kg^-1, respectively along with the recovery rate in 500 mg kg^-1 Ni polluted soil reached up to 92.5%. Earthworms' respiration was sensitive presenting a significant dose-effect relationship with the Ni concentration. Five biochemical indices in earthworms were induced along with the relevance of a dose- and time-response pattern. Additionally, histological damage in earthworm's body wall, intestine and seminal vesicles were observed under high level of Ni exposure. Overall, we believe that our current study will open a new window for deeper insights into the potential availability of Ni along with other associated metals on the function of soil ecosystem.

Magnitude of the mixture hormetic response of soil alkaline phosphatase can be predicted based on single conditions of Cd and Pb

In soil ecosystems, it is very challenging to predict mixture hormesis effects. In the present study, soil alkaline phosphatase (ALP) was selected to investigate and predict its potential hormetic responses under Cd and Pb stresses. Typical reverse U-shaped dose-response relationships between ALP activities and the single and combined Cd and Pb were observed, showing a hormetic response of soil itself. The maximum stimulatory magnitudes ranged in 8.0 - 8.6% under 0.004 - 0.2 mg/kg Cd and 80 - 400 mg/kg Pb, respectively. An enhanced stimulation of 15.7% occurred under the binary mixtures of 0.6 mg/kg Cd and 200 mg/kg Pb. In addition, a dosage-independent binary linear regression model was proposed based on an assumption of a linear relationship between the single and combined hormetic responses under Cd and Pb. Our model can well predict ALP's responses in the presence of the two metals' mixtures (p < 0.1). Our findings provided new understandings to hormesis in soil.

Phytoremediation: Environmentally sustainable way for reclamation of heavy metal polluted soils

Soil contamination with toxic metals is a widespread environmental issue resulting from global industrialization within the past few years. Therefore, decontamination of heavy metal contaminated soils is very important to reduce the associated risks and for maintenance of environmental health and ecological restoration. Conventional techniques for reclamation of such soils are expensive and environmental non-friendly. Phytoremediation is an emerging technology implementing green plants to clean up the environment from contaminants and has been considered as a cost-effective and non-invasive alternative to the conventional remediation approaches. There are different types of phytoremediation including, phytostabilization, phytostimulation, phytotransformation, phytofiltration and phytoextraction, the latter being most extensively acknowledged for remediation of soils contaminated with toxic heavy metals. Recent literature is gathered to critically review the sources, hazardous effects of toxic heavy metals and environmentally sustainable phytoremediation technique for heavy metal polluted soils to offer widespread applicability of this green technology. Different strategies to enhance the bioavailability of heavy metals in the soil are also discussed shortly. It can be concluded that phytoremediation of heavy metal contaminated soils is a reliable tool and necessary for making the land resource accessible for crop production.

Heavy metals distribution and their bioavailability in earthworm assistant sludge treatment wetland

Sludge treatment wetlands (STWs) have been used for sludge treatment in recent years, however, heavy metals (HMs) are one of the limiting factors for the final sludge application, and the fate of HMs in STWs are still not well studied. Therefore, six STWs with two plant species and earthworm addition were investigated to evaluate their effects on HMs distribution and bioavailability. The results showed that plant uptake of HMs was insignificant with earthworm addition. Earthworm had the highest enrichment for Cd with bioaccumulation factors of 6.9-7.3. Moreover, earthworm had a positive effect to remove HMs in accumulated sludge. Meanwhile, the bioavailability of Cd in accumulated sludge was decreased by earthworm addition, with the acid-soluble fraction decreased from range 16.5-22.7% to range 7.2-10.1%. Furthermore, HMs mass balance in the STWs revealed that HMs were widely distributed in the accumulated sludge, leachate and others, while their (except Cd) accumulation in the plants and earthworm are less than 1%. The Cd toxicity in the accumulated sludge can be reduced by the addition of earthworm with enrichment of 3.6-8.2%. Overall, earthworm addition have positive effects on distribution and bioavailability of HMs in STWs.

The Role of Heavy Metals in Plant Response to Biotic Stress

The present review discusses the impact of heavy metals on the growth of plants at different concentrations, paying particular attention to the hormesis effect. Within the past decade, study of the hormesis phenomenon has generated considerable interest because it was considered not only in the framework of plant growth stimulation but also as an adaptive response of plants to a low level of stress which in turn can play an important role in their responses to other stress factors. In this review, we focused on the defence mechanisms of plants as a response to different metal ion doses and during the crosstalk between metal ions and biotic stressors such as insects and pathogenic fungi. Issues relating to metal ion acquisition and ion homeostasis that may be essential for the survival of plants, pathogens and herbivores competing in the same environment were highlighted. Besides, the influence of heavy metals on insects, especially aphids and pathogenic fungi, was shown. Our intention was also to shed light on the relationship between heavy metals deposition in the environment and ecological communities formed under a strong selective pressure.