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Schultz JD, Yuly JL, Arsenault EA, Parker K, Chowdhury SN, Dani R, Kundu S, Nuomin H, Zhang Z, Valdiviezo J, Zhang P, Orcutt K, Jang SJ, Fleming GR, Makri N, Ogilvie JP, Therien MJ, Wasielewski MR, Beratan DN. Coherence in Chemistry: Foundations and Frontiers. Chem Rev 2024. [PMID: 39441172 DOI: 10.1021/acs.chemrev.3c00643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2024]
Abstract
Coherence refers to correlations in waves. Because matter has a wave-particle nature, it is unsurprising that coherence has deep connections with the most contemporary issues in chemistry research (e.g., energy harvesting, femtosecond spectroscopy, molecular qubits and more). But what does the word "coherence" really mean in the context of molecules and other quantum systems? We provide a review of key concepts, definitions, and methodologies, surrounding coherence phenomena in chemistry, and we describe how the terms "coherence" and "quantum coherence" refer to many different phenomena in chemistry. Moreover, we show how these notions are related to the concept of an interference pattern. Coherence phenomena are indeed complex, and ambiguous definitions may spawn confusion. By describing the many definitions and contexts for coherence in the molecular sciences, we aim to enhance understanding and communication in this broad and active area of chemistry.
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Affiliation(s)
- Jonathan D Schultz
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Jonathon L Yuly
- Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08540, United States
- Department of Physics, Duke University, Durham, North Carolina 27708, United States
| | - Eric A Arsenault
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
- Department of Chemistry, Columbia University, New York, New York 10027, United States
| | - Kelsey Parker
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States
| | - Sutirtha N Chowdhury
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States
| | - Reshmi Dani
- Department of Chemistry, University of Illinois, Urbana, Illinois 61801, United States
| | - Sohang Kundu
- Department of Chemistry, University of Illinois, Urbana, Illinois 61801, United States
| | - Hanggai Nuomin
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States
| | - Zhendian Zhang
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States
| | - Jesús Valdiviezo
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States
- Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, United States
- Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States
- Sección Química, Departamento de Ciencias, Pontificia Universidad Católica del Perú, San Miguel, Lima 15088, Peru
| | - Peng Zhang
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States
| | - Kaydren Orcutt
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Bioproducts Research Unit, Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture, 800 Buchanan Street, Albany, California 94710, United States
| | - Seogjoo J Jang
- Department of Chemistry and Biochemistry, Queens College, City University of New York, Queens, New York 11367, United States
- Chemistry and Physics PhD programs, Graduate Center, City University of New York, New York, New York 10016, United States
| | - Graham R Fleming
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Nancy Makri
- Department of Chemistry, University of Illinois, Urbana, Illinois 61801, United States
- Department of Physics, University of Illinois, Urbana, Illinois 61801, United States
- Illinois Quantum Information Science and Technology Center, University of Illinois, Urbana, Illinois 61801, United States
| | - Jennifer P Ogilvie
- Department of Physics, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Michael J Therien
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States
| | - Michael R Wasielewski
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - David N Beratan
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States
- Department of Physics, Duke University, Durham, North Carolina 27708, United States
- Department of Biochemistry, Duke University, Durham, North Carolina 27710, United States
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He X, Wu B, Shang Y, Li B, Cheng X, Liu J. New phase space formulations and quantum dynamics approaches. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2022. [DOI: 10.1002/wcms.1619] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Xin He
- Beijing National Laboratory for Molecular Sciences Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University Beijing China
| | - Baihua Wu
- Beijing National Laboratory for Molecular Sciences Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University Beijing China
| | - Youhao Shang
- Beijing National Laboratory for Molecular Sciences Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University Beijing China
| | - Bingqi Li
- Beijing National Laboratory for Molecular Sciences Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University Beijing China
| | - Xiangsong Cheng
- Beijing National Laboratory for Molecular Sciences Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University Beijing China
| | - Jian Liu
- Beijing National Laboratory for Molecular Sciences Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University Beijing China
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3
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Bose A, Makri N. Coherent State-Based Path Integral Methodology for Computing the Wigner Phase Space Distribution. J Phys Chem A 2019; 123:4284-4294. [DOI: 10.1021/acs.jpca.9b00758] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Amartya Bose
- Department of Chemistry, University of Illinois, 505 S. Mathews Avenue, Urbana, Illinois 61801, United States
| | - Nancy Makri
- Department of Chemistry, University of Illinois, 505 S. Mathews Avenue, Urbana, Illinois 61801, United States
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4
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Bose A, Makri N. Wigner Distribution by Adiabatic Switching in Normal Mode or Cartesian Coordinates and Molecular Applications. J Chem Theory Comput 2018; 14:5446-5458. [DOI: 10.1021/acs.jctc.8b00179] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Amartya Bose
- Department of Chemistry, University of Illinois, Urbana, Illinois 61801, United States
| | - Nancy Makri
- Department of Chemistry, University of Illinois, Urbana, Illinois 61801, United States
- Department of Physics, University of Illinois, Urbana, Illinois 61801, United States
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5
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Affiliation(s)
- Xinzijian Liu
- Beijing National Laboratory For Molecular Sciences, Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing, China
| | - Jian Liu
- Beijing National Laboratory For Molecular Sciences, Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing, China
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6
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Herman MF. Improving the efficiency of Monte Carlo surface hopping calculations. J Phys Chem B 2014; 118:8026-33. [PMID: 24650188 DOI: 10.1021/jp501139s] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
A surface hopping method with a Monte Carlo procedure for deciding whether to hop at each step along the classical trajectories used in the semiclassical calculation is discussed. It is shown for a simple one-dimensional model problem that the numerical efficiency of the method can be improved by averaging over several copies of the sections of each trajectory that span the interaction regions. The use of Sobol sequences in the selection of the initial momentum for the trajectories is also explored. It is found that accurate results can be obtained with relatively small trajectory samples.
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Affiliation(s)
- Michael F Herman
- Department of Chemistry, Tulane University , New Orleans, Louisiana 70118, United States
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7
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Liu J, Alder BJ, Miller WH. A semiclassical study of the thermal conductivity of low temperature liquids. J Chem Phys 2011; 135:114105. [DOI: 10.1063/1.3639107] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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8
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Liu J. Two more approaches for generating trajectory-based dynamics which conserves the canonical distribution in the phase space formulation of quantum mechanics. J Chem Phys 2011; 134:194110. [DOI: 10.1063/1.3589406] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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9
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Gruenbaum SM, Loring RF. Semiclassical quantization in Liouville space for vibrational dynamics. J Phys Chem B 2011; 115:5148-56. [PMID: 21375227 DOI: 10.1021/jp104872r] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Semiclassical approximations to quantum mechanics can include quantum coherence effects in dynamical calculations based on classical mechanics. The Herman-Kluk (HK) semiclassical propagator has been demonstrated to reproduce quantum effects in nonlinear vibrational response functions of anharmonic oscillators but does not provide a practical numerical route to calculations for multiple degrees of freedom. In an HK calculation of a response function, quantum coherence effects enter through interference between pairs of classical trajectories. We have previously elucidated the mechanism by which the HK approximation reproduces quantum effects in response functions in the regime of quasiperiodic dynamics. We have applied this understanding to significantly simplify the semiclassical calculation of response functions in this dynamical regime. The phase space difference between trajectories is treated perturbatively in anharmonicity, allowing integration over these differences to be performed analytically and leaving integration over mean trajectories to be performed numerically. This mean-trajectory (MT) approximation has been applied to linear and nonlinear vibrational response functions for isolated and coupled anharmonic motions. Here, we derive an MT approximation for the Liouville space time evolution operator or superoperator that propagates the density operator. This analysis provides a form of the MT approximation that is readily applicable to other dynamical quantities besides response functions and clarifies the connection between semiclassical quantization of propagators for the wave function and for the density operator.
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Affiliation(s)
- Scott M Gruenbaum
- Department of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, New York 14853, USA
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Liu J, Miller WH. An approach for generating trajectory-based dynamics which conserves the canonical distribution in the phase space formulation of quantum mechanics. I. Theories. J Chem Phys 2011; 134:104101. [DOI: 10.1063/1.3555273] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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11
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Liu J, Miller WH. An approach for generating trajectory-based dynamics which conserves the canonical distribution in the phase space formulation of quantum mechanics. II. Thermal correlation functions. J Chem Phys 2011; 134:104102. [DOI: 10.1063/1.3555274] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Makri N. Forward–backward semiclassical and quantum trajectory methods for time correlation functions. Phys Chem Chem Phys 2011; 13:14442-52. [DOI: 10.1039/c0cp02374d] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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13
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Gruenbaum SM, Loring RF. Semiclassical nonlinear response functions for coupled anharmonic vibrations. J Chem Phys 2009; 131:204504. [PMID: 19947691 DOI: 10.1063/1.3266566] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Observables in linear and nonlinear infrared spectroscopy may be computed from vibrational response functions describing nuclear dynamics on a single electronic surface. We demonstrate that the Herman-Kluk (HK) semiclassical approximation to the quantum propagator yields an accurate representation of quantum coherence effects in linear and nonlinear response functions for coupled anharmonic oscillators. A considerable numerical price is paid for this accuracy; the calculation requires a multidimensional integral over a highly oscillatory integrand that also grows without bound as a function of evolution times. The interference among classical trajectories in the HK approximation produces quantization of good action variables. By treating this interference analytically, we develop a mean-trajectory (MT) approximation that requires only the propagation of classical trajectories linked by transitions in action. The MT approximation accurately reproduces coherence effects in response functions of coupled anharmonic oscillators in a regime in which the observables are strongly influenced by these interactions among vibrations.
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Affiliation(s)
- Scott M Gruenbaum
- Department of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, New York 14853, USA
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14
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Liu J, Miller WH, Paesani F, Zhang W, Case DA. Quantum dynamical effects in liquid water: A semiclassical study on the diffusion and the infrared absorption spectrum. J Chem Phys 2009; 131:164509. [PMID: 19894958 DOI: 10.1063/1.3254372] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jian Liu
- Department of Chemistry and K. S. Pitzer Center for Theoretical Chemistry, University of California, Berkeley, California 94720-1460, USA
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15
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Bukhman E, Makri N. Mixed Quantum and Forward−Backward Semiclassical Dynamics. J Phys Chem A 2009; 113:7183-8. [DOI: 10.1021/jp809741x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ed Bukhman
- Department of Chemistry, University of Illinois, Urbana, Illinois 61801
| | - Nancy Makri
- Department of Chemistry, University of Illinois, Urbana, Illinois 61801
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16
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Direct Monte Carlo evaluation of real-time quantum correlation functions using single-step propagators. Chem Phys Lett 2009. [DOI: 10.1016/j.cplett.2008.11.057] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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17
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Liu J, Miller WH. Linearized semiclassical initial value time correlation functions with maximum entropy analytic continuation. J Chem Phys 2008; 129:124111. [PMID: 19045010 DOI: 10.1063/1.2981065] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jian Liu
- Department of Chemistry and K. S. Pitzer Center for Theoretical Chemistry, University of California, Berkeley, California 94720-1460, USA
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18
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Gruenbaum SM, Loring RF. Semiclassical mean-trajectory approximation for nonlinear spectroscopic response functions. J Chem Phys 2008; 129:124510. [DOI: 10.1063/1.2978167] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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19
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Kegerreis J, Nakayama A, Makri N. Complex-time velocity autocorrelation functions for Lennard-Jones fluids with quantum pair-product propagators. J Chem Phys 2008; 128:184509. [PMID: 18532828 DOI: 10.1063/1.2911925] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
We use the pair-product approximation to the complex-time quantum mechanical propagator to obtain accurate quantum mechanical results for the symmetrized velocity autocorrelation function of a Lennard-Jones fluid at two points on the thermodynamic phase diagram. A variety of tests are performed to determine the accuracy of the method and understand its breakdown at longer times. We report quantitative results for the initial 0.3 ps of the dynamics, a time at which the correlation function has decayed to approximately one fifth of its initial value.
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Affiliation(s)
- Jeb Kegerreis
- Department of Chemistry, University of Illinois, 601 S. Goodwin Avenue, Urbana, IL 61801, USA
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20
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Chen J, Makri N. Forward–backward semiclassical dynamics with single-bead coherent state density. Mol Phys 2008. [DOI: 10.1080/00268970701854797] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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21
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Liu J, Miller WH. Test of the consistency of various linearized semiclassical initial value time correlation functions in application to inelastic neutron scattering from liquid para-hydrogen. J Chem Phys 2008; 128:144511. [DOI: 10.1063/1.2889945] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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22
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Liu J, Miller WH. Linearized semiclassical initial value time correlation functions using the thermal Gaussian approximation: Applications to condensed phase systems. J Chem Phys 2007; 127:114506. [PMID: 17887856 DOI: 10.1063/1.2774990] [Citation(s) in RCA: 81] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The linearized approximation to the semiclassical initial value representation (LSC-IVR) has been used together with the thermal Gaussian approximation (TGA) (TGA/LSC-IVR) [J. Liu and W. H. Miller, J. Chem. Phys. 125, 224104 (2006)] to simulate quantum dynamical effects in realistic models of two condensed phase systems. This represents the first study of dynamical properties of the Ne(13) Lennard-Jones cluster in its liquid-solid phase transition region (temperature from 4 to 14 K). Calculation of the force autocorrelation function shows considerable differences from that given by classical mechanics, namely that the cluster is much more mobile (liquidlike) than in the classical case. Liquid para-hydrogen at two thermodynamic state points (25 and 14 K under nearly zero external pressure) has also been studied. The momentum autocorrelation function obtained from the TGA/LSC-IVR approach shows very good agreement with recent accurate path integral Monte Carlo results at 25 K [A. Nakayama and N. Makri, J. Chem. Phys. 125, 024503 (2006)]. The self-diffusion constants calculated by the TGA/LSC-IVR are in reasonable agreement with those from experiment and from other theoretical calculations. These applications demonstrate the TGA/LSC-IVR to be a practical and versatile method for quantum dynamics simulations of condensed phase systems.
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Affiliation(s)
- Jian Liu
- Department of Chemistry and K. S. Pitzer Center for Theoretical Chemistry, University of California, Berkeley, California 94720-1460, USA
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Bukhman E, Makri N. Forward−Backward Semiclassical Dynamics with Information-Guided Noise Reduction for a Molecule in Solution. J Phys Chem A 2007; 111:11320-7. [PMID: 17658736 DOI: 10.1021/jp0721907] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The forward--backward semiclassical dynamics (FBSD) methodology is used to obtain expressions for time correlation functions of a system (atom or molecule) in solution. We use information-guided noise reduction (IGNoR) [Makri, N. Chem. Phys. Lett. 2004, 400, 446] to minimize the statistical error associated with the Monte Carlo integration of oscillatory functions. This is possible by reformulating the correlation function in terms of an oscillatory solvent-dependent contribution whose integral can be obtained analytically and a slowly varying function obtained via a grid-based iterative evaluation of solute properties. Knowledge of the exact integral of the oscillatory function, combined with correlated statistics, leads to partial cancellation of the Monte Carlo error. Application on a one-dimensional solute-solvent model shows a substantial improvement of convergence in the IGNoR-enhanced FBSD correlation function for a fixed number of Monte Carlo samples. The reduction of statistical error achieved by using the IGNoR methodology becomes more significant as the number of solvent particles increases.
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Affiliation(s)
- Edward Bukhman
- Department of Chemistry, University of Illinois, 601 South Goodwin Avenue, Urbana, Illinois 61801, USA
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Liu J, Miller WH. Real time correlation function in a single phase space integral beyond the linearized semiclassical initial value representation. J Chem Phys 2007; 126:234110. [PMID: 17600407 DOI: 10.1063/1.2743023] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
It is shown how quantum mechanical time correlation functions [defined, e.g., in Eq. (1.1)] can be expressed, without approximation, in the same form as the linearized approximation of the semiclassical initial value representation (LSC-IVR), or classical Wigner model, for the correlation function [cf. Eq. (2.1)], i.e., as a phase space average (over initial conditions for trajectories) of the Wigner functions corresponding to the two operators. The difference is that the trajectories involved in the LSC-IVR evolve classically, i.e., according to the classical equations of motion, while in the exact theory they evolve according to generalized equations of motion that are derived here. Approximations to the exact equations of motion are then introduced to achieve practical methods that are applicable to complex (i.e., large) molecular systems. Four such methods are proposed in the paper--the full Wigner dynamics (full WD) and the second order WD based on "Wigner trajectories" [H. W. Lee and M. D. Scully, J. Chem. Phys. 77, 4604 (1982)] and the full Donoso-Martens dynamics (full DMD) and the second order DMD based on "Donoso-Martens trajectories" [A. Donoso and C. C. Martens, Phys. Rev. Lett. 8722, 223202 (2001)]--all of which can be viewed as generalizations of the original LSC-IVR method. Numerical tests of the four versions of this new approach are made for two anharmonic model problems, and for each the momentum autocorrelation function (i.e., operators linear in coordinate or momentum operators) and the force autocorrelation function (nonlinear operators) have been calculated. These four new approximate treatments are indeed seen to be significant improvements to the original LSC-IVR approximation.
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Affiliation(s)
- Jian Liu
- Department of Chemistry and K. S. Pitzer Center for Theoretical Chemistry, University of California, Berkeley, California 94720-1460, USA.
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Kegerreis J, Makri N. Optimized Monte Carlo sampling in forward–backward semiclassical dynamics. J Comput Chem 2007; 28:818-24. [PMID: 17226835 DOI: 10.1002/jcc.20608] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Forward-backward semiclassical dynamics (FBSD) provides a rigorous and powerful methodology for calculating time correlation functions in condensed phase systems characterized by substantial quantum mechanical effects associated with zero-point motion, quantum dispersion, or identical particle exchange symmetries. The efficiency of these simulations arises from the use of classical trajectories to capture all dynamical information. However, full quantization of the density operator makes these calculations rather expensive compared to fully classical molecular dynamics simulations. This article discusses the convergence properties of various correlation functions and introduces an optimal Monte Carlo sampling scheme that leads to a significant reduction of statistical error. A simple and efficient procedure for normalizing the FBSD results is also discussed. Illustrative examples on model systems are presented.
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Affiliation(s)
- Jeb Kegerreis
- Department of Chemistry, University of Illinois, 601 S. Goodwin Avenue, Urbana, Illinois 61801, USA
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26
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Liu J, Miller WH. Using the thermal Gaussian approximation for the Boltzmann operator in semiclassical initial value time correlation functions. J Chem Phys 2006; 125:224104. [PMID: 17176131 DOI: 10.1063/1.2395941] [Citation(s) in RCA: 80] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The thermal Gaussian approximation (TGA) recently developed by Frantsuzov et al. [Chem. Phys. Lett. 381, 117 (2003)] has been demonstrated to be a practical way for approximating the Boltzmann operator exp(-betaH) for multidimensional systems. In this paper the TGA is combined with semiclassical (SC) initial value representations (IVRs) for thermal time correlation functions. Specifically, it is used with the linearized SC-IVR (LSC-IVR, equivalent to the classical Wigner model), and the "forward-backward semiclassical dynamics" approximation developed by Shao and Makri [J. Phys. Chem. A 103, 7753 (1999); 103, 9749 (1999)]. Use of the TGA with both of these approximate SC-IVRs allows the oscillatory part of the IVR to be integrated out explicitly, providing an extremely simple result that is readily applicable to large molecular systems. Calculation of the force-force autocorrelation for a strongly anharmonic oscillator demonstrates its accuracy, and calculation of the velocity autocorrelation function (and thus the diffusion coefficient) of liquid neon demonstrates its applicability.
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Affiliation(s)
- Jian Liu
- Department of Chemistry and K. S. Pitzer Center for Theoretical Chemistry, University of California, Berkeley, California 94720-1460, USA
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27
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Braams BJ, Manolopoulos DE. On the short-time limit of ring polymer molecular dynamics. J Chem Phys 2006; 125:124105. [PMID: 17014164 DOI: 10.1063/1.2357599] [Citation(s) in RCA: 123] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We examine the short-time accuracy of a class of approximate quantum dynamical techniques that includes the centroid molecular dynamics (CMD) and ring polymer molecular dynamics (RPMD) methods. Both of these methods are based on the path integral molecular dynamics (PIMD) technique for calculating the exact static equilibrium properties of quantum mechanical systems. For Kubo-transformed real-time correlation functions involving operators that are linear functions of positions or momenta, the RPMD and (adiabatic) CMD approximations differ only in the choice of the artificial mass matrix of the system of ring polymer beads that is employed in PIMD. The obvious ansatz for a general method of this type is therefore to regard the elements of the PIMD (or Parrinello-Rahman) mass matrix as an adjustable set of parameters that can be chosen to improve the accuracy of the resulting approximation. We show here that this ansatz leads uniquely to the RPMD approximation when the criterion that is used to select the mass matrix is the short-time accuracy of the Kubo-transformed correlation function. In particular, we show that the leading error in the RPMD position autocorrelation function is O(t(8)) and the error in the velocity autocorrelation function is O(t(6)), for a general anharmonic potential. The corresponding errors in the CMD approximation are O(t(6)) and O(t(4)), respectively.
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Affiliation(s)
- Bastiaan J Braams
- Department of Mathematics and Computer Science, Emory University, Atlanta, GA 30332, USA
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