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Yamashita T, Miyamura N, Kawai S. Classification of the HCN isomerization reaction dynamics in Ar buffer gas via machine learning. J Chem Phys 2023; 159:124116. [PMID: 38127399 DOI: 10.1063/5.0156313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2023] [Accepted: 09/07/2023] [Indexed: 12/23/2023] Open
Abstract
The effect of the presence of Ar on the isomerization reaction HCN ⇄ CNH is investigated via machine learning. After the potential energy surface function is developed based on the CCSD(T)/aug-cc-pVQZ level ab initio calculations, classical trajectory simulations are performed. Subsequently, with the aim of extracting insights into the reaction dynamics, the obtained reactivity, that is, whether the reaction occurs or not under a given initial condition, is learned as a function of the initial positions and momenta of all the atoms in the system. The prediction accuracy of the trained model is greater than 95%, indicating that machine learning captures the features of the phase space that affect reactivity. Machine learning models are shown to successfully reproduce reactivity boundaries without any prior knowledge of classical reaction dynamics theory. Subsequent analyses reveal that the Ar atom affects the reaction by displacing the effective saddle point. When the Ar atom is positioned close to the N atom (resp. the C atom), the saddle point shifts to the CNH (HCN) region, which disfavors the forward (backward) reaction. The results imply that analyses aided by machine learning are promising tools for enhancing the understanding of reaction dynamics.
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Affiliation(s)
- Takefumi Yamashita
- Laboratory for Systems Biology and Medicine, Research Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan
- Department of Physical Chemistry, School of Pharmacy and Pharmaceutical Sciences, Hoshi University, 2-4-41 Ebara, Shinagawa-ku, Tokyo 142-8501, Japan
| | - Naoaki Miyamura
- Laboratory for Systems Biology and Medicine, Research Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan
| | - Shinnosuke Kawai
- Department of Chemistry, Faculty of Science, Shizuoka University, 836 Ohya, Suruga-ku, Shizuoka 422-8529, Japan
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Yamazaki K, Niitsu N, Kanno M, Ueda K, Kono H. Capturing the photo-induced dynamics of nano-molecules by X-ray free electron laser induced Coulomb explosion. J Chem Phys 2019; 151:124305. [PMID: 31575189 DOI: 10.1063/1.5115072] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We performed reaction dynamics simulations to demonstrate that the vibrational dynamics of C60 induced by infrared (IR) pulses can be traced by triggering Coulomb explosion with intense femtosecond X-ray free electron laser (XFEL) probe pulses. The time series of the angular anisotropy β(t) of fast C+ and C2+ fragments of C60 60+ produced by such an XFEL pulse reflects the instantaneous structure of C60 vibrationally excited by IR pulses. The phases and amplitudes of excited vibrational modes and the coupling between excited modes can be successfully extracted from the expansion of β(t) in terms of vibrational modes. This proof-of-principle simulation clearly demonstrates that various information of the structures and reaction dynamics of large clusters or biomolecules can be retrieved by decomposing the experimentally determined β(t) into vibrational modes.
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Affiliation(s)
- Kaoru Yamazaki
- Institute for Materials Research, Tohoku University, Sendai 980-8577, Japan
| | - Naoyuki Niitsu
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-9578, Japan
| | - Manabu Kanno
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-9578, Japan
| | - Kiyoshi Ueda
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan
| | - Hirohiko Kono
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-9578, Japan
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3
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Fuest H, Lai YH, Blaga CI, Suzuki K, Xu J, Rupp P, Li H, Wnuk P, Agostini P, Yamazaki K, Kanno M, Kono H, Kling MF, DiMauro LF. Diffractive Imaging of C_{60} Structural Deformations Induced by Intense Femtosecond Midinfrared Laser Fields. PHYSICAL REVIEW LETTERS 2019; 122:053002. [PMID: 30822022 DOI: 10.1103/physrevlett.122.053002] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2017] [Indexed: 05/20/2023]
Abstract
Theoretical studies indicated that C_{60} exposed to linearly polarized intense infrared pulses undergoes periodic cage structural distortions with typical periods around 100 fs (1 fs=10^{-15} s). Here, we use the laser-driven self-imaging electron diffraction technique, previously developed for atoms and small molecules, to measure laser-induced deformation of C_{60} in an intense 3.6 μm laser field. A prolate molecular elongation along the laser polarization axis is determined to be (6.1±1.4)% via both angular- and energy-resolved measurements of electrons that are released, driven back, and diffracted from the molecule within the same laser field. The observed deformation is confirmed by density functional theory simulations of nuclear dynamics on time-dependent adiabatic states and indicates a nonadiabatic excitation of the h_{g}(1) prolate-oblate mode. The results demonstrate the applicability of laser-driven electron diffraction methods for studying macromolecular structural dynamics in four dimensions with atomic time and spatial resolutions.
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Affiliation(s)
- Harald Fuest
- Physics Department, Ludwig-Maximilians-Universität Munich, D-85748 Garching, Germany
- Max Planck Institute of Quantum Optics, D-85748 Garching, Germany
| | - Yu Hang Lai
- Department of Physics, The Ohio State University, Columbus, Ohio 43210, USA
| | - Cosmin I Blaga
- Department of Physics, The Ohio State University, Columbus, Ohio 43210, USA
| | - Kazuma Suzuki
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| | - Junliang Xu
- Department of Physics, The Ohio State University, Columbus, Ohio 43210, USA
| | - Philipp Rupp
- Physics Department, Ludwig-Maximilians-Universität Munich, D-85748 Garching, Germany
- Max Planck Institute of Quantum Optics, D-85748 Garching, Germany
| | - Hui Li
- Physics Department, Ludwig-Maximilians-Universität Munich, D-85748 Garching, Germany
- J.R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas 66506, USA
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai 200062, China
| | - Pawel Wnuk
- Physics Department, Ludwig-Maximilians-Universität Munich, D-85748 Garching, Germany
- Max Planck Institute of Quantum Optics, D-85748 Garching, Germany
- Institute of Experimental Physics, Faculty of Physics, University of Warsaw, ul. Pasteura 5, 02-093 Warsaw, Poland
| | - Pierre Agostini
- Department of Physics, The Ohio State University, Columbus, Ohio 43210, USA
| | - Kaoru Yamazaki
- Institute for Material Research, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Manabu Kanno
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| | - Hirohiko Kono
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| | - Matthias F Kling
- Physics Department, Ludwig-Maximilians-Universität Munich, D-85748 Garching, Germany
- Max Planck Institute of Quantum Optics, D-85748 Garching, Germany
- J.R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas 66506, USA
| | - Louis F DiMauro
- Department of Physics, The Ohio State University, Columbus, Ohio 43210, USA
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The Role of Super-Atom Molecular Orbitals in Doped Fullerenes in a Femtosecond Intense Laser Field. Sci Rep 2017; 7:121. [PMID: 28273922 PMCID: PMC5427842 DOI: 10.1038/s41598-017-00124-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Accepted: 02/08/2017] [Indexed: 11/10/2022] Open
Abstract
The interaction of gas phase endohedral fullerene Ho3N@C80 with intense (0.1–5 × 1014 W/cm2), short (30 fs), 800 nm laser pulses was investigated. The power law dependence of Ho3N@C80q+, q = 1–2, was found to be different from that of C60. Time-dependent density functional theory computations revealed different light-induced ionization mechanisms. Unlike in C60, in doped fullerenes, the breaking of the cage spherical symmetry makes super atomic molecular orbital (SAMO) states optically active. Theoretical calculations suggest that the fast ionization of the SAMO states in Ho3N@C80 is responsible for the n = 3 power law for singly charged parent molecules at intensities lower than 1.2 × 1014 W/cm2.
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Niitsu N, Kikuchi M, Ikeda H, Yamazaki K, Kanno M, Kono H, Mitsuke K, Toda M, Nakai K. Nanosecond simulations of the dynamics of C60 excited by intense near-infrared laser pulses: Impulsive Raman excitation, rearrangement, and fragmentation. J Chem Phys 2012; 136:164304. [DOI: 10.1063/1.4704896] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
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Abstract
Ab initio classical molecular dynamics calculations have been used to simulate the dissociation of H(2)NCH(2+) in a strong laser field. The frequencies of the continuous oscillating electric field were chosen to be ω = 0.02, 0.06, and 0.18 au (2280, 760, and 253 nm, respectively). The field had a maximum strength of 0.03 au (3.2 × 10(13) W cm(-2)) and was aligned with the CN bond. Trajectories were started with 100 kcal/mol of vibrational energy above zero point and were integrated for up to 600 fs at the B3LYP/6-311G(d,p) level of theory. A total of 200 trajectories were calculated for each of the three different frequencies and without a field. Two dissociation channels are observed: HNCH(+) + H(+) and H(2)NC(+) + H(+). About one-half to two-thirds of the H(+) dissociations occurred directly, while the remaining indirect dissociations occurred at a slower rate with extensive migration of H(+) between C and N. The laser field increased the initial dissociation rate by a factor of ca. 1.4 and decreased the half-life by a factor of ca. 0.75. The effects were similar at each of the three frequencies. The HNCH(+) to H(2)NC(+) branching ratio decreased from 10.6:1 in the absence of the field to an average of 8.4:1 in the laser field. The changes in the rates and branching ratios can be attributed to the laser field lowering the reaction barriers as a result of a difference in polarizability of the reactant and transition states.
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Affiliation(s)
- Jia Zhou
- Department of Chemistry, Wayne State University, Detroit, Michigan 48202, USA
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Hertel IV, Shchatsinin I, Laarmann T, Zhavoronkov N, Ritze HH, Schulz CP. Fragmentation and ionization dynamics of C60 in elliptically polarized femtosecond laser fields. PHYSICAL REVIEW LETTERS 2009; 102:023003. [PMID: 19257268 DOI: 10.1103/physrevlett.102.023003] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2008] [Indexed: 05/27/2023]
Abstract
Ionization and fragmentation of C60 fullerenes is studied in elliptically polarized, intense fs laser fields at 797 nm [I=(0.5-4.3)x10;{14} W cm;{-2}] and contrasted with Xe+, utilizing time-of-flight mass spectrometry. Very pronounced changes of parent and fragment ion yield as a function of ellipticity are observed. At lower intensities reduction of the ion yield for circular polarization establishes a coherent two-photon process connected with the key role of the LUMO+1(t_{1g}) "doorway state" and multielectron dynamics. Comparison with the behavior at 399 nm corroborates this finding. At high intensities enhanced fragmentation is observed which is tentatively attributed to returning loops of electron trajectories by the combined action of the C60+ field and the circular laser field.
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Affiliation(s)
- I V Hertel
- Max Born Institute, Max-Born-Strasse 2a, D-12489 Berlin-Adlershof, Germany.
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Shchatsinin I, Laarmann T, Zhavoronkov N, Schulz CP, Hertel IV. Ultrafast energy redistribution in C(60) fullerenes: a real time study by two-color femtosecond spectroscopy. J Chem Phys 2008; 129:204308. [PMID: 19045865 DOI: 10.1063/1.3026734] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Strong-field excitation and energy redistribution dynamics of C(60) fullerenes are studied by means of time-resolved mass spectrometry in a two-color femtosecond pump-probe setup. Resonant pre-excitation of the electronic system via the first dipole-allowed HOMO-->LUMO+1(t(1g)) (HOMO denotes highest occupied molecular orbital and LUMO denotes lowest unoccupied molecular orbital) transition with ultrashort 25 fs pulses at 399 nm of some 10(12) W cm(-2) results in a highly nonequilibrium distribution of excited electrons and vibrational modes in the neutral species. The subsequent coupling among the electronic and nuclear degrees of freedom is monitored by probing the system with time-delayed 27 fs pulses at 797 nm of some 10(13) W cm(-2). Direct information on the characteristic relaxation time is derived from the analysis of transient singly and multiply charged parent and fragment ion signals as a function of pump-probe delay and laser pulse intensity. The observed relaxation times tau(el) approximately 60-400 fs are attributed to different microcanonical ensembles prepared in the pre-excitation process and correspond to different total energy contents and energy sharing between electronic and vibrational degrees. The characteristic differences and trends allow one to extract a consistent picture for the formation dynamics of ions in different charge states and their fullerenelike fragments and give evidence to collective effects in multiple ionization such as plasmon-enhanced energy deposition.
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