Infrared laser driven double proton transfer. An optimal control theory study

The Role of Proton Transfer on Mutations

Hydrogen bonds play a critical role in nucleobase studies as they encode genes, map protein structures, provide stability to the base pairs, and are involved in spontaneous and induced mutations. Proton transfer mechanism is a critical phenomenon that is related to the acid-base characteristics of the nucleobases in Watson-Crick base pairs. The energetic and dynamical behavior of the proton can be depicted from these characteristics and their adjustment to the water molecules or the surrounding ions. Further, new pathways open up in which protonated nucleobases are generated by proton transfer from the ionized water molecules and elimination of a hydroxyl radical in this review, the analysis will be focused on understanding the mechanism of untargeted mutations in canonical, wobble, Hoogsteen pairs, and mutagenic tautomers through the non-covalent interactions. Further, rare tautomer formation through the single proton transfer (SPT) and the double proton transfer (DPT), quantum tunneling in nucleobases, radiation-induced bystander effects, role of water in proton transfer (PT) reactions, PT in anticancer drugs-DNA interaction, displacement and oriental polarization, possible models for mutations in DNA, genome instability, and role of proton transfer using kinetic parameters for RNA will be discussed.

Toward understanding tautomeric switching in hydroxynaphthaldehydes: Characterization of electronic absorption spectra

Long-wavelength electronic absorption spectra of 4-hydroxy-1-naphthaldehyde, its dimer complexes, and 4-hydroxy-3-(piperidine-1-ylmethyl)-1-naphthaldehyde are investigated using time-dependent density functional theory with the TPSSh functional within a continuum solvation model. The results are correlated to recent experimental findings on solvent-, pH- and concentration-dependent absorption. It is confirmed that with decreasing wavelength the spectrum is dominated by the deprotonated (360 nm–400 nm), the dimer (340 nm–370 nm) and the monomer (< 280 nm) species. The potential use of hydroxynaphthaldehydes for the design of tautomeric switches is discussed.